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High-frequency dissolved organic carbon and nitrate from the Kuparuk River outlet near Toolik Field Station, Alaska, summer 2017-2019
Data file describing high frequency (approximately every 10 minutes), optial sensor-derived chemistry of river water from the Kuparuk River near Toolik Field Station, North Slope of Alaska. Data file includes date, time, dissolved organic carbon (DOC) concentration, and nitrate concentration. Sensors (V2 s::can uv-vis spectrophotometers) were continuously deployed from June through August or September and optically determined nitrate and dissolved organic carbon concentrations.
High-frequency dissolved organic carbon and nitrate from the Trevor Creek outlet near Toolik Field Station, Alaska, summer 2017-2019
Data file describing high frequency (every ~10 minutes), optial sensor-derived chemistry of river water from Trevor Creek near Toolik Field Station, North Slope of Alaska. Data file includes date, time, dissolved organic carbon (DOC) concentration, and nitrate concentration. Sensors (V2 s::can uv-vis spectrophotometers) were continuously deployed from June through August or September and optically determined nitrate and dissolved organic carbon concentrations.
Accession numbers for radiocarbon and stable carbon isotopes of dissolved organic carbon (DOC) and dissolved inorganic carbon (DIC) in soil leachates from permafrost soils collected from the North Slope of Alaska in the summers of 2018 and 2022
Leachates of dissolved organic carbon (DOC) from permafrost soils were prepared from soils collected from the North Slope of Alaska in 2018 and 2022. Soil leachates were then either kept in the dark or exposed to light from LEDs at 305 nm (UV) and 405 nm (visible), and then inoculated with native microbial communities and incubated. At the start of the biological incubations, single replicates of the DOC after dark or light treatment and inoculation were assigned accession numbers and analyzed for 14C and 13C at the National Ocean Sciences Accelerator Mass Spectrometry (NOSAMS) facility. At the end of the biological incubations, duplicates of the dissolved inorganic carbon (DIC) in those waters were assigned accession numbers and analyzed for 14C and 13C at the NOSAMS facility.
Preparation of dissolved organic carbon (DOC) leachates from permafrost soils collected from the North Slope of Alaska in the summers of 2018 and 2022
Dissolved organic carbon (DOC) was leached from permafrost soils collected from the frozen permafrost layer at four sites underlying tussock tundra or wet sedge tundra vegetation and from both undisturbed soil and a thermokarst failure on the North Slope of Alaska during the summers of 2018 and 2022.
Radiocarbon and stable carbon isotopes of carbon dioxide produced by respiration of dissolved organic carbon (DOC) leached from permafrost soils collected from the North Slope of Alaska in the summers of 2018 and 2022
Dissolved organic carbon (DOC) was leached from permafrost soils near the Toolik Field Station in the Alaskan Arctic, either kept in the dark or exposed to light treatments, and then incubated with native permafrost microbial communities. The radiocarbon (14C) and stable carbon (13C) isotopic compositions of the initial DOC present in the dark or light-exposed permafrost soil leachates and the carbon dioxide (CO2) produced by microbial respiration of dark or light-exposed permafrost DOC were quantified.
Methane concentrations in dissolved organic carbon (DOC) leachates from permafrost soils collected from the North Slope of Alaska in the summers of 2018 and 2019
Methane (CH4) concentrations were measured in dissolved organic carbon (DOC) leachates of permafrost soils collected from the frozen permafrost layer at five sites underlying tussock tundra or wet sedge vegetation on the North Slope of Alaska during the summers of 2018 and 2019.
Concentration of dissolved inorganic carbon (DIC) and del 13C isotope value for lakes and rivers on North Slope from Brooks Range to Prudhoe Bay, Arctic LTER 1988 to 1989.
Concentration of dissolved inorganic carbon (DIC) and del 13C isotope value for lakes and rivers on North Slope from Brooks Range to Prudhoe Bay, Arctic LTER 1988 to 1989.
Baltimore Ecosystem Study: Soil atmosphere fluxes of carbon dioxide, nitrous oxide and methane, 1998 - ongoing
The Baltimore Ecosystem Study (BES) established a network of long-term permanent biogeochemical study plots in 1998. These plots provide long-term data on vegetation, soil and hydrologic processes in the key ecosystem types within the urban ecosystem. The network of study plots includes forest plots (upland and riparian), chosen to represent the range of forest conditions in the area and grass plots (to represent home lawns). Plots are instrumented with lysimeters (drainage and tension) to sample soil solution chemistry, time domain reflectometry probes to measure soil moisture, dataloggers to measure and record soil temperature, and trace gas flux chambers to measure the flux of carbon dioxide, nitrous oxide and methane from soil to the atmosphere. Measurements of in situ nitrogen mineralization, nitrification and denitrification were made at approximately monthly intervals from Fall 1998 - Fall 2000. Detailed vegetation characterization (all layers) was done in summer 1998 and 2015. Data from these plots has been published in Groffman et al. (2006, 2009), Groffman and Pouyat (2009), Savva et al. (2010), Costa and Groffman (2013), Duncan et al. (2013), Waters et al. (2014), Ni and Groffman (2018), Templeton et al. (2019). Literature Cited Costa, K.H. and P.M. Groffman. 2013. Factors regulating net methane flux in urban forests and grasslands. Soil Science Society of America Journal 77:850 - 855. Duncan, J. M., L. E. Band, and P. M. Groffman. 2013. Towards closing the watershed nitrogen budget: Spatial and temporal scaling of denitrification. Journal of Geophysical Research Biogeosciences 118:1-5; DOI: 10.1002/jgrg.20090 Groffman PM, Pouyat RV, Cadenasso ML, Zipperer WC, Szlavecz K, Yesilonis IC,. Band LE and Brush GS. 2006. Land use context and natural soil controls on plant community composition and soil nitrogen and carbon dynamics in urban and rural forests. Forest Ecology and Management 236:177-192. Groffman, P.M., C.O. Williams, R.V. Pouyat, L.E. Band and I.C.
Soil carbon stabilization along productivity gradients in interior Alaska: Summer 2003
Boreal forests in a warmer future climate are likely to exhibit altered productivity levels, tightened fire return intervals, and increased decomposition rates to varying degrees across the landscape. This research focuses on mechanisms of soil C stabilization in P. mariana systems along gradients in stand productivity. Charred material in the soil will be quantified to understand the lasting effect of fire on the stabilization of soil C. The interaction between temperature and productivity in relation to the stabilization of soil C will be investigated by monitoring climate and soil temperatures along the productivity gradients and through laboratory incubations of soil. Research questions are addressed in three main areas of inquiry: 1) how the interaction between stand production and landscape position effect the stabilization of C throughout the soil profile, 2) how the contribution of burn residues to total C accumulation varies across the landscape, and 3) the relationship between aboveground productivity and burn residues across the landscape. The overall goal is to apply an understanding of the biophysical controls on C storage in the boreal forest to the landscape level.
Eight Mile Lake Research Watershed, Carbon in Permafrost Experimental Heating Research (CiPEHR): Half-hourly soil moisture and temperature data, 2008-2024
The Carbon in Permafrost Experimental Heating Research (CiPEHR) project addresses the following questions: 1) Does ecosystem warming cause a net release of C from the ecosystem to the atmosphere?, 2) Does the decomposition of old C that comprises the bulk of the soil C pool influence ecosystem C loss?, and 3) How do winter and summer warming alone, and in combination, affect ecosystem C exchange? We are answering these questions using a combination of field and laboratory experiments to measure ecosystem carbon balance and radiocarbon isotope ratios at a warming experiment located in an upland tundra field site near Healy, Alaska in the foothills of the Alaska Range. This data set includes half-hourly values of surface moisture content (gravimetric, 0-5cm), depth-integrated soil moisture (volumetric, 0-20 cm), and soil temperature in winter warming, summer warming, and control treatment plots at CiPEHR.
Eight Mile Lake Research Watershed, Carbon in Permafrost Experimental Heating Research (CiPEHR): Weekly thaw depth data, 2009-2024
The Carbon in Permafrost Experimental Heating Research (CiPEHR) project addresses the following questions: 1) Does ecosystem warming cause a net release of C from the ecosystem to the atmosphere?, 2) Does the decomposition of old C, that comprises the bulk of the soil C pool, influence ecosystem C loss?, and 3) How do winter and summer warming alone, and in combination, affect ecosystem C exchange? We are answering these questions using a combination of field and laboratory experiments to measure ecosystem carbon balance and radiocarbon isotope ratios at a warming experiment located in an upland tundra field site near Healy, Alaska in the foothills of the Alaska Range. This data set includes weekly thaw depth measurements collected from winter warming, summer warming, and control treatment plots at CiPEHR. Additional measurements from on-plot gas flux wells, water table monitoring wells, and off-plot locations are also reported. Note that the experimental warming portion of this experiment concluded in 2022. These data are a continuation of measurements taken at previously warmed plots but plots were not actively manipulated after 2022.
Eight Mile Lake Research Watershed, Carbon in Permafrost Experimental Heating and Drying Research (DryPEHR): Weekly thaw depth data, 2011-2022
This drying and warming experiment addresses the following questions: 1) Does ecosystem drying, warming and permafrost thaw cause a net release or uptake of C from the ecosystem to the atmosphere?, 2) Does the decomposition of old C that comprises the bulk of the soil C pool influence ecosystem C loss? 3) How do drying and warming affect plant communities and ecosystem properties? We are answering these questions using a combined warming and drying experiment (DryPEHR), which is situated with the Carbon in Permafrost Experimental Heating Research (CiPEHR) project and located in an upland tundra field site near Healy, Alaska in the foothills of the Alaska Range. Warming treatment here refers to growing season air temperature warming (~1C) using open top chambers (OTC) combined with soil 'warming' using snow fences during the snow covered months. Drying is achieved using an automated pumping system that lowers the water table in the dry plots. Soil warming began in 2008; OTCs and drying in 2011. This data set includes weekly ground thaw measurements.
Eight Mile Lake Research Watershed, Carbon in Permafrost Experimental Heating and Drying Research (DryPEHR): Seasonal water table depth data, 2011-2022
This drying and warming experiment addresses the following questions: 1) Does ecosystem drying, warming and permafrost thaw cause a net release or uptake of C from the ecosystem to the atmosphere?, 2) Does the decomposition of old C that comprises the bulk of the soil C pool influence ecosystem C loss? 3) How do drying and warming affect plant communities and ecosystem properties? We are answering these questions using a combined warming and drying experiment (DryPEHR), which is situated with the Carbon in Permafrost Experimental Heating Research (CiPEHR) project and located in an upland tundra field site near Healy, Alaska in the foothills of the Alaska Range. Warming treatment here refers to growing season air temperature warming (~1C) using open top chambers (OTC) combined with soil 'warming' using snow fences during the snow covered months. Drying is achieved using an automated pumping system that lowers the water table in the dry plots. Soil warming began in 2008; OTCs and drying in 2011. This data includes water table depth measurements collected from the drying experiment (dry and control) at DryPEHR and winter warming and control treatment plots at CiPEHR for the ice-free period of 2011-2020.
Eight Mile Lake Research Watershed, Carbon in Permafrost Experimental Heating Research (CiPEHR): Aboveground plant biomass, 2009-2017, 2021
The Carbon in Permafrost Experimental Heating Research (CiPEHR) project addresses the following questions: 1) Does ecosystem warming cause a net release of C from the ecosystem to the atmosphere?, 2) Does the decomposition of old C that comprises the bulk of the soil C pool influence ecosystem C loss?, and 3) How do winter and summer warming alone, and in combination, affect ecosystem C exchange? We are answering these questions using a combination of field and laboratory experiments to measure ecosystem carbon balance and radiocarbon isotope ratios at a warming experiment located in an upland tundra field site near Healy, Alaska in the foothills of the Alaska Range. This data set includes aboveground plant biomass from winter warming, summer warming, and control treatment plots at CiPEHR.
Eight Mile Lake Research Watershed, Carbon in Permafrost Experimental Heating Research (CiPEHR): Annual and growing season decomposition of a common substrate, 2008-2024
The Carbon in Permafrost Experimental Heating Research (CiPEHR) project addresses the following questions: 1) Does ecosystem warming cause a net release of C from the ecosystem to the atmosphere?, 2) Does the decomposition of old C, that comprises the bulk of the soil C pool, influence ecosystem C loss?, and 3) How do winter and summer warming alone, and in combination, affect ecosystem C exchange? We are answering these questions using a combination of field and laboratory experiments to measure ecosystem carbon balance and radiocarbon isotope ratios at a warming experiment located in an upland tundra field site near Healy, Alaska in the foothills of the Alaska Range.
Surface carbon, water and energy fluxes measured by eddy covariance at 3 sites within the Alaska Peatlands Experiment and Bonanza Creek Experimental Forest
These data are simultaneous and continuous measurements of carbon, water and energy fluxes of the terrestrial landscape. These fluxes are major regulatory drivers of the boreal climate system and form key linkages and feedbacks between the land surface, the atmosphere and the oceans. At the APEX project site, within Bonanza Creek Experimental Forest, this monitoring is repeated across a chronosequence of permafrost degradation; the Black Spruce site is an area of stable permafrost with intact black spruce forest (APEX gamma site), the Thermokarst site is an active thermokarst zone with considerable tree mortality (APEX betaSW site), the Fen site is within a stable treeless fen with deep active layer depth (APEX apexcon,low, and ele sites). The main variables being monitored are the instananeous fluxes of CO2, water vapor and surface energy (shortwave, longwave and net radiation), secondary variables included photosynthetically active radiation (PAR), air and soil temperatures, rainfall, snow depth, soil moisture content, wind direction and speed, and average atmospheric concentrations of CO2 and H2O through the year.
Eight Mile Lake Research Watershed, Carbon in Permafrost Experimental Heating Research (CiPEHR): Phenology of Dominant Plant Species I - Bud burst and Senescence 2013-2021
The Carbon in Permafrost Experimental Heating Research (CiPEHR) project addresses the following questions: 1) Does ecosystem warming cause a net release of C from the ecosystem to the atmosphere?, 2) Does the decomposition of old C, that comprises the bulk of the soil C pool, influence ecosystem C loss?, and 3) How do winter and summer warming alone, and in combination, affect ecosystem C exchange? We are answering these questions using a combination of field and laboratory experiments to measure ecosystem carbon balance and radiocarbon isotope ratios at a warming experiment located in an upland tundra field site near Healy, Alaska in the foothills of the Alaska Range. In this dataset we specifically ask, how does warming of soil and air impact the phenology of dominant plant species? Phenological data was collected to determine the timing of first bud break, onset and completion of senescence, and reproductive effort (flower and berry production).
Eight Mile Lake Research Watershed, Carbon in Permafrost Experimental Heating and Drying Research (DryPEHR): Phenology of Dominant Plant Species I - Bud burst and Senescence 2013-2021
This drying and warming experiment addresses the following questions: 1) Does ecosystem drying, warming and permafrost thaw cause a net release or uptake of C from the ecosystem to the atmosphere?, 2) Does the decomposition of old C that comprises the bulk of the soil C pool influence ecosystem C loss? 3) How do drying and warming affect plant communities and ecosystem properties? We are answering these questions using a combined warming and drying experiment (DryPEHR), which is situated with the Carbon in Permafrost Experimental Heating Research (CiPEHR) project and located in an upland tundra field site near Healy, Alaska in the foothills of the Alaska Range. Warming treatment here refers to growing season air temperature warming (~1C) using open top chambers (OTC) combined with soil 'warming' using snow fences during the snow covered months. Drying is achieved using an automated pumping system that lowers the water table in the dry plots. Soil warming began in 2008; OTCs and drying in 2011. In this dataset we specifically ask, how does warming and drying of soil and air impact the phenology of dominant plant species? Phenological data was collected to determine the timing of first bud break, onset and completion of senescence, and reproductive effort (flower and berry production).
Eight Mile Lake Research Watershed, Carbon in Permafrost Experimental Heating and Drying Research (DryPEHR): Half-hourly soil moisture and temperature data, 2010-2022
This drying and warming experiment addresses the following questions: 1) Does ecosystem drying, warming and permafrost thaw cause a net release or uptake of C from the ecosystem to the atmosphere?, 2) Does the decomposition of old C that comprises the bulk of the soil C pool influence ecosystem C loss? 3) How do drying and warmign affect plant communities and ecosystem properties? We are answering these questions using a combined warming and drying experiment (DryPEHR), which is situated with the Carbon in Permafrost Experimental Heating Research (CiPEHR) project and located in an upland tundra field site near Healy, Alaska in the foothills of the Alaska Range. Warming treatment here refers to growing season air temperature warming (~1C) using open top chambers (OTC) combined with soil 'warming' using snow fences during the snow covered months. Drying is achieve using an automated pumping system that lowers the water table in the dry plots. Soil warming began in 2008; OTCs and drying in 2011.This data set includes half-hourly values of surface moisture content (gravimetric, 0-5cm), depth-integrated soil moisture (volumetric, 0-20 cm), and soil temperature in winter warming and summer warming, drying, and control treatment plots at DryPEHR.
Eight Mile Lake Research Watershed, Carbon in Permafrost Experimental Heating Research (CiPEHR): Phenology of Dominant Plant Species II - Berry Production 2013-2021
The Carbon in Permafrost Experimental Heating Research (CiPEHR) project addresses the following questions: 1) Does ecosystem warming cause a net release of C from the ecosystem to the atmosphere?, 2) Does the decomposition of old C, that comprises the bulk of the soil C pool, influence ecosystem C loss?, and 3) How do winter and summer warming alone, and in combination, affect ecosystem C exchange? We are answering these questions using a combination of field and laboratory experiments to measure ecosystem carbon balance and radiocarbon isotope ratios at a warming experiment located in an upland tundra field site near Healy, Alaska in the foothills of the Alaska Range. In this dataset we specifically ask, how does warming of soil and air impact the phenology of dominant plant species? Phenological data was collected to determine the timing of first bud break, onset and completion of senescence, and reproductive effort (flower and berry production).
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.