Find research datasets worth reusing

opennotspecifiedAug 2011View details →

The upper canines of the male Sulawesi Babirusa grow upwards through the snout and continue to grow in a backward-curving spiral. They are too brittle and shallow rooted to be used in fighting and theirfunction, if any, is unknown. Until recently, all babirusas were classified as a single species. The genus has now been split into at least three species, based on features of their skulls and teeth and the amount of hair on their bodies. The Sulawest Babirusa has nearly naked skin. The name Babyrousa celebensis specifically refers to animals from north Sulawesi and the taxonomic identity of babirusas onthe rest of the island remains undecided. Unlike other pig species, babirusas do not have noses adapted for rooting. Babyrousa celebensis Lore Lindu National Park, Sulawesi. Photo: Berndt Fischer/ photolibrary.com in Suidae

The upper canines of the male Sulawesi Babirusa grow upwards through the snout and continue to grow in a backward-curving spiral. They are too brittle and shallow rooted to be used in fighting and theirfunction, if any, is unknown. Until recently, all babirusas were classified as a single species. The genus has now been split into at least three species, based on features of their skulls and teeth and the amount of hair on their bodies. The Sulawest Babirusa has nearly naked skin. The name Babyrousa celebensis specifically refers to animals from north Sulawesi and the taxonomic identity of babirusas onthe rest of the island remains undecided. Unlike other pig species, babirusas do not have noses adapted for rooting. Babyrousa celebensis Lore Lindu National Park, Sulawesi. Photo: Berndt Fischer/ photolibrary.com

Distribution. NW Madagascar, known only from its type locality, the Antafondro Classified Forest N of the Andranomalaza River and W of the Manongarivo Special Reserve. in Cheirogaleidae

Distribution. NW Madagascar, known only from its type locality, the Antafondro Classified Forest N of the Andranomalaza River and W of the Manongarivo Special Reserve.

Distribution. NW Madagascar; the range is still incompletely known, but it is believed to be restricted to the Ankarafantsika region; the type specimen was collected adjacent to Lac Ravelobe in Ankarafantsika National Park, and the species is also known to occur in the Mariarano Classified Forest, just N of Mahajanga. in Cheirogaleidae

Distribution. NW Madagascar; the range is still incompletely known, but it is believed to be restricted to the Ankarafantsika region; the type specimen was collected adjacent to Lac Ravelobe in Ankarafantsika National Park, and the species is also known to occur in the Mariarano Classified Forest, just N of Mahajanga.

Distribution. NE & CE Madagascar, found roughly from the Anjanaharibe-Sud Special Reserve in the N to the Anosibe an'ala Classified Forest in the S. in Indriidae

Distribution. NE & CE Madagascar, found roughly from the Anjanaharibe-Sud Special Reserve in the N to the Anosibe an'ala Classified Forest in the S.

Distribution. EC Madagascar, currently known only from the Bemosary Classified Forest (Fandriana), but limits of the distribution may ultimately prove to extend from the Mangoro River in the N to the Mananjary River in the S. in Indriidae

Distribution. EC Madagascar, currently known only from the Bemosary Classified Forest (Fandriana), but limits of the distribution may ultimately prove to extend from the Mangoro River in the N to the Mananjary River in the S.

openother-openApr 2022View details →

Dataset used for training IoT C&C classifier

No description provided.

Nesokia is sister to Bandicota and are nested in Rattus phylogenetically, making Rat- tus paraphyletic. Tarsomys, Limnomys, and Diplothrix are also phylogenetically in Rat- tus, and the clade is in need of focused re- vision at the generic level. Nesokia bunnui was originally described as a separate ge-nus, Erythronesokia, because it is morphologically very distinctive from N. indica. Type specimen was destroyed during the Iraq War, and a neotype was recently designated to replace it. Monotypic. Distribution. Tigris and Euphrates river valleys, SE Iraq. Descriptive notes. Head—body 230-260 mm, tail 205-270 mm, ear 18-21 mm, hindfoot 49-58 mm; weight 519 g. The Long-tailed Bandicoot Rat is larger than the Short-tailed Bandicoot Rat (N. indica). Pelage is soft and woolly, interspersed with harsher coarse hair and long black hairs near mid-back. Dorsum is fawn to ocherous red, washed with purple or chestnuton darker individuals. Hairs are basally slate-gray and distally rufous, occasionally with whitish or black tips. Muzzle is drab. Sides arefawn, with gray edge toward venter. Venteris whitish, extending onto cheeks where the same pattern from gray to fawn to dorsal pelage occurs. Feet are large and robust, being light brown and well-furred dorsally. Claws are amber on forefeet and dull brown on hindfeet; pollux is extremely small. Ears are moderately long and brownish, with no hair internally. Tail is ¢.82-104% of head-body length and deep brownish drab, interspersed with visible white hair. Skull is large and robust, similarly to the Short-tailed Bandicoot Rat. Habitat. Marsh and swamp land. Food and Feeding. No information. Breeding. No information. Activity patterns. The Long-tailed Bandicoot Rat is terrestrial, although it isfound in swampy and marshy areas and is probably amphibious. Movements, Home range and Social organization. No information. Status and Conservation. Classified as Endangered on The IUCN Red List. The Longtailed Bandicoot Rat is apparently rare and is known from very few specimens. Marsh and swamp habitats in which it is found were completely destroyed during the Iraq War by draining, war damage, and agricultural expansion. In recent years, flooding from Tigris and Euphrates rivers and high snow fall and melt haveresulted in partial restoration ofits native habitat, although restoration is not a complete. Populations are now probably highly fragmented. Bibliography. Al-Ansari et al. (2012), Al-Robaae & Felten (1990), Khajuria (1981), Krystufek et al. (2017), Musser & Carleton (2005), Richardson & Hussain (2006), Stuart (2008). in Muridae

Nesokia is sister to Bandicota and are nested in Rattus phylogenetically, making Rat- tus paraphyletic. Tarsomys, Limnomys, and Diplothrix are also phylogenetically in Rat- tus, and the clade is in need of focused re- vision at the generic level. Nesokia bunnui was originally described as a separate ge-nus, Erythronesokia, because it is morphologically very distinctive from N. indica. Type specimen was destroyed during the Iraq War, and a neotype was recently designated to replace it. Monotypic. Distribution. Tigris and Euphrates river valleys, SE Iraq. Descriptive notes. Head—body 230-260 mm, tail 205-270 mm, ear 18-21 mm, hindfoot 49-58 mm; weight 519 g. The Long-tailed Bandicoot Rat is larger than the Short-tailed Bandicoot Rat (N. indica). Pelage is soft and woolly, interspersed with harsher coarse hair and long black hairs near mid-back. Dorsum is fawn to ocherous red, washed with purple or chestnuton darker individuals. Hairs are basally slate-gray and distally rufous, occasionally with whitish or black tips. Muzzle is drab. Sides arefawn, with gray edge toward venter. Venteris whitish, extending onto cheeks where the same pattern from gray to fawn to dorsal pelage occurs. Feet are large and robust, being light brown and well-furred dorsally. Claws are amber on forefeet and dull brown on hindfeet; pollux is extremely small. Ears are moderately long and brownish, with no hair internally. Tail is ¢.82-104% of head-body length and deep brownish drab, interspersed with visible white hair. Skull is large and robust, similarly to the Short-tailed Bandicoot Rat. Habitat. Marsh and swamp land. Food and Feeding. No information. Breeding. No information. Activity patterns. The Long-tailed Bandicoot Rat is terrestrial, although it isfound in swampy and marshy areas and is probably amphibious. Movements, Home range and Social organization. No information. Status and Conservation. Classified as Endangered on The IUCN Red List. The Longtailed Bandicoot Rat is apparently rare and is known from very few specimens. Marsh and swamp habitats in which it is found were completely destroyed during the Iraq War by draining, war damage, and agricultural expansion. In recent years, flooding from Tigris and Euphrates rivers and high snow fall and melt haveresulted in partial restoration ofits native habitat, although restoration is not a complete. Populations are now probably highly fragmented. Bibliography. Al-Ansari et al. (2012), Al-Robaae & Felten (1990), Khajuria (1981), Krystufek et al. (2017), Musser & Carleton (2005), Richardson & Hussain (2006), Stuart (2008).

Distribution. Mt Cameroon, W Cameroon, and Bioko I, Equatorial Guinea. Descriptive notes. Head-body 100- 130 mm, tail 110-147 mm, ear 16-20 mm, hindfoot 21-25 mm; weight 27-62 g. Fur of the Cameroon Soft-furred Mouse is dark rufous-brown to blackish brown above and pale to dark gray below. Tail is very long (c.112% of head-body length) and dark. Hindfeet and forefeet are dark brown. Females have three pairs of nipples. Habitat. Montane forest and alpine grassland at elevations above 1000 m. Food and Feeding. No information. Breeding. Gestation lasts 26-30 days. Litters have 2-6 young. Activity patterns. The Cameroon Soft-furred Mouse is nocturnal and terrestrial. Movements, Home range and Social organization. No information. Status and Conservation. Classified as Endangered on The IUCN Red List. The Cameroon Soft-furred Mouse occurs in two disjunct areas occupying only ¢.2900 km? and the extent and quality of its forest habitat continue to decline. Bibliography. Eisentraut (1970, 1973), Happold (2013a), Missoup et al. (2012), Monadjem etal. (2015). in Muridae

Distribution. Mt Cameroon, W Cameroon, and Bioko I, Equatorial Guinea. Descriptive notes. Head-body 100- 130 mm, tail 110-147 mm, ear 16-20 mm, hindfoot 21-25 mm; weight 27-62 g. Fur of the Cameroon Soft-furred Mouse is dark rufous-brown to blackish brown above and pale to dark gray below. Tail is very long (c.112% of head-body length) and dark. Hindfeet and forefeet are dark brown. Females have three pairs of nipples. Habitat. Montane forest and alpine grassland at elevations above 1000 m. Food and Feeding. No information. Breeding. Gestation lasts 26-30 days. Litters have 2-6 young. Activity patterns. The Cameroon Soft-furred Mouse is nocturnal and terrestrial. Movements, Home range and Social organization. No information. Status and Conservation. Classified as Endangered on The IUCN Red List. The Cameroon Soft-furred Mouse occurs in two disjunct areas occupying only ¢.2900 km? and the extent and quality of its forest habitat continue to decline. Bibliography. Eisentraut (1970, 1973), Happold (2013a), Missoup et al. (2012), Monadjem etal. (2015).

Deccan region, Madras, India. Genus Vandeleuria is masculine, so widely used specific name oleracea has been changed for gender agreement. Vandeleuria oleraceusis possibly a composite of species. Polytypic, but subspecific taxonomy requires reassessment. Distribution. Widespread in S Asia (India, Nepal, Bhutan, Bangladesh, and Sri Lan-ka), S China (W & S Yunnan), and mainland SE Asia N of the Isthmus of Kra. Descriptive notes. Head-body 68 mm, tail 105 mm, ear 13 mm, hindfoot 17 mm; weight 10 g. The Indomalayan Long-tailed Climbing Mouse is small, with flat nail on outer finger and outertoe; tail is slender, brown, twice as long as head-body length, and lacks distal tuft. Dorsal pelageis silky and salmon in color; venter is white, with fulvous hues. Habitat. Tall cane and tangled vines in primary and secondary forest such as bamboo forest, moist deciduous forest, temperate forests, montane wet zone, and disturbed secondary forests, and perhaps agricultural areas at elevations of 150-1500 m. Food and Feeding. Indomalayan [Long-tailed Climbing Mice eat fruits, buds, and flowers. Breeding. Litters of the Indomalayan Long-tailed Climbing Mouse have 3-6 young. Activity patterns. Indomalayan Long-tailed Climbing Mice are arboreal and nocturnal, although one individual was caught duringthe day. Movements, Home range and Social organization. Indomalayan Long-tailed Climbing Mice build nests in tall bushes or cane to rear their young. Status and Conservation. Classified as Least Concern on The IUCN Red Last (as V. olacea). The Indomalayan Long-tailed Climbing Mouse occurs in several habitats and a wide distribution that includes national parks. Further taxonomical studies are required to assess conservation status ofthis potentially diverse species complex. Bibliography. Corbet & Hill (1992), Dang Huy Huynh et al. (1994), Ellerman (1941), Marshall (1977b), Musser & Carleton (2005), Osgood (1932), Phillips (1980), Wang Yingxiang (2003). in Muridae

Deccan region, Madras, India. Genus Vandeleuria is masculine, so widely used specific name oleracea has been changed for gender agreement. Vandeleuria oleraceusis possibly a composite of species. Polytypic, but subspecific taxonomy requires reassessment. Distribution. Widespread in S Asia (India, Nepal, Bhutan, Bangladesh, and Sri Lan-ka), S China (W & S Yunnan), and mainland SE Asia N of the Isthmus of Kra. Descriptive notes. Head-body 68 mm, tail 105 mm, ear 13 mm, hindfoot 17 mm; weight 10 g. The Indomalayan Long-tailed Climbing Mouse is small, with flat nail on outer finger and outertoe; tail is slender, brown, twice as long as head-body length, and lacks distal tuft. Dorsal pelageis silky and salmon in color; venter is white, with fulvous hues. Habitat. Tall cane and tangled vines in primary and secondary forest such as bamboo forest, moist deciduous forest, temperate forests, montane wet zone, and disturbed secondary forests, and perhaps agricultural areas at elevations of 150-1500 m. Food and Feeding. Indomalayan [Long-tailed Climbing Mice eat fruits, buds, and flowers. Breeding. Litters of the Indomalayan Long-tailed Climbing Mouse have 3-6 young. Activity patterns. Indomalayan Long-tailed Climbing Mice are arboreal and nocturnal, although one individual was caught duringthe day. Movements, Home range and Social organization. Indomalayan Long-tailed Climbing Mice build nests in tall bushes or cane to rear their young. Status and Conservation. Classified as Least Concern on The IUCN Red Last (as V. olacea). The Indomalayan Long-tailed Climbing Mouse occurs in several habitats and a wide distribution that includes national parks. Further taxonomical studies are required to assess conservation status ofthis potentially diverse species complex. Bibliography. Corbet & Hill (1992), Dang Huy Huynh et al. (1994), Ellerman (1941), Marshall (1977b), Musser & Carleton (2005), Osgood (1932), Phillips (1980), Wang Yingxiang (2003).

Distribution. Now restricted to the Channel Country of SW Queensland and the Lake Eyre Basin in NE South Australia. Descriptive notes. Head-body 95-120 mm, tail 105-160 mm, ear 23-29 mm, hindfoot 32-37 mm; weight 30-50 g. The Fawn Hopping Mouse has body form typical of hopping mice, with very long hindfeet, long tail with distal brush of longer hairs, very long ears, and large protruberant eyes. Dorsal fur is of variable color, from pale pinkish fawn to gray; ventral fur white. Unlike most other hopping mice, it has no throat pouch, but males have a glandular area of naked skin on the chest. Habitat. Occurs in low shrublands and tussock grasslands on stony ("gibber") plains and claypans. Shows marked habitat segregation from the Dusky Hopping Mouse (N. fuscus), which is closely associated with sandy substrates. Food and Feeding. The Fawn Hopping Mouse is mostly granivorous, but also eats other plant material (stems, leaves) and occasionally invertebrates. It uses succulent, salt-adapted plants around edges of claypans as a source of water. Breeding. Reproduction is probably largely opportunistic and aseasonal, with high reproductive output from near-continuous breeding after periods of high rainfall; reported littersize is 1-5, most commonly three; gestation period 38-43 days for nonlactating females. Females may mature later than other hopping mice, with reproductive maturity reached at about six months. Activity patterns. Terrestrial and nocturnal. Fawn Hopping Mice shelter during day in burrow systems that are typically simpler and shallower than those of other hopping mice. Movements, Home range and Social organization. Fawn Hopping Mice generally live singly or in small groups; typically uncommon within range, but population density may increase by an order of magnitude following periods of high rainfall. Status and Conservation. Classified as Near Threatened on The IUCN Red List. The Fawn Hopping Mouse has shown marked decline in range (estimated at greater than 50%), and presumably population size, since European settlement of Australia. This is mostlikely due to predation by the introduced house cat and Red Fox (Vulpes vulpes), and to habitat degradation associated with pastoralism. Bibliography. Brazenor (1934), Burbidge et al. (2008), Finlayson (1939), Gould (1853), Jackson & Groves (2015), Murray et al. (1999), Ogilby (1892), Thomas (1921h), Van Dyck & Strahan (2008), Waite (1898), Watts & Aslin (1981), Woinarski et al. (2014), Wood Jones (1925). in Muridae

Distribution. Now restricted to the Channel Country of SW Queensland and the Lake Eyre Basin in NE South Australia. Descriptive notes. Head-body 95-120 mm, tail 105-160 mm, ear 23-29 mm, hindfoot 32-37 mm; weight 30-50 g. The Fawn Hopping Mouse has body form typical of hopping mice, with very long hindfeet, long tail with distal brush of longer hairs, very long ears, and large protruberant eyes. Dorsal fur is of variable color, from pale pinkish fawn to gray; ventral fur white. Unlike most other hopping mice, it has no throat pouch, but males have a glandular area of naked skin on the chest. Habitat. Occurs in low shrublands and tussock grasslands on stony ("gibber") plains and claypans. Shows marked habitat segregation from the Dusky Hopping Mouse (N. fuscus), which is closely associated with sandy substrates. Food and Feeding. The Fawn Hopping Mouse is mostly granivorous, but also eats other plant material (stems, leaves) and occasionally invertebrates. It uses succulent, salt-adapted plants around edges of claypans as a source of water. Breeding. Reproduction is probably largely opportunistic and aseasonal, with high reproductive output from near-continuous breeding after periods of high rainfall; reported littersize is 1-5, most commonly three; gestation period 38-43 days for nonlactating females. Females may mature later than other hopping mice, with reproductive maturity reached at about six months. Activity patterns. Terrestrial and nocturnal. Fawn Hopping Mice shelter during day in burrow systems that are typically simpler and shallower than those of other hopping mice. Movements, Home range and Social organization. Fawn Hopping Mice generally live singly or in small groups; typically uncommon within range, but population density may increase by an order of magnitude following periods of high rainfall. Status and Conservation. Classified as Near Threatened on The IUCN Red List. The Fawn Hopping Mouse has shown marked decline in range (estimated at greater than 50%), and presumably population size, since European settlement of Australia. This is mostlikely due to predation by the introduced house cat and Red Fox (Vulpes vulpes), and to habitat degradation associated with pastoralism. Bibliography. Brazenor (1934), Burbidge et al. (2008), Finlayson (1939), Gould (1853), Jackson & Groves (2015), Murray et al. (1999), Ogilby (1892), Thomas (1921h), Van Dyck & Strahan (2008), Waite (1898), Watts & Aslin (1981), Woinarski et al. (2014), Wood Jones (1925).

The first comprehensive revision of all the species attributed to Melomys led J. I. Menzies in 1996 to resurrect the genus Paramelomys and to redefine its morphologicallimits and species content. Menzies created P. gressitti as a new species belonging to a group displaying morphological similarities and including also P. lorentzii and P. moncktoni. Monotypic Distribution. E New Guinea. Descriptive notes. Head-body 135-162 mm, hindfoot 30-34 mm; no specific data are available for body weight. Gressitt's Mosaic-tailed Rat is a medium-sized Paramelomys with a soft, thick and woolly pelage, a long narrow foot, and a tail with three hairs per scale. It exhibits a medium-sepia dorsal pelage and a gray-buff ventral one. Tail is slightly shorter (99%) than head-body length. The skull has a narrow zygomatic plate. Habitat. Moist tropical mountain forest between 2300 m and 2400 m. Food and Feeding. No information. Breeding. No information. Activity patterns. Gressitt's Mosaic-tailed Rat is terrestrial. Movements, Home range and Social organization. No information. Status and Conservation. Classified as Endangered on The IUCN Red List owing to its small geographic range (less than 3500 km?*) and the destruction ofits habitat by mining and logging activities. The major threat to Gressitt's Mosaic-tailed Rat is ongoing habitat degradation caused by nearby human populations; habitat on Mount Kandy has been destroyed by gold-miners and wood-cutters. Bibliography. Menzies (1996). in Muridae

The first comprehensive revision of all the species attributed to Melomys led J. I. Menzies in 1996 to resurrect the genus Paramelomys and to redefine its morphologicallimits and species content. Menzies created P. gressitti as a new species belonging to a group displaying morphological similarities and including also P. lorentzii and P. moncktoni. Monotypic Distribution. E New Guinea. Descriptive notes. Head-body 135-162 mm, hindfoot 30-34 mm; no specific data are available for body weight. Gressitt's Mosaic-tailed Rat is a medium-sized Paramelomys with a soft, thick and woolly pelage, a long narrow foot, and a tail with three hairs per scale. It exhibits a medium-sepia dorsal pelage and a gray-buff ventral one. Tail is slightly shorter (99%) than head-body length. The skull has a narrow zygomatic plate. Habitat. Moist tropical mountain forest between 2300 m and 2400 m. Food and Feeding. No information. Breeding. No information. Activity patterns. Gressitt's Mosaic-tailed Rat is terrestrial. Movements, Home range and Social organization. No information. Status and Conservation. Classified as Endangered on The IUCN Red List owing to its small geographic range (less than 3500 km?*) and the destruction ofits habitat by mining and logging activities. The major threat to Gressitt's Mosaic-tailed Rat is ongoing habitat degradation caused by nearby human populations; habitat on Mount Kandy has been destroyed by gold-miners and wood-cutters. Bibliography. Menzies (1996).

Lophuromys medicaudatus, L. woosnami, and L. luteogaster are in subgenus Kivumys and woosnami species group. Monotypic. Distribution. Endemic to the Albertine Rift, occurring around Lake Kivu in E DR Congo and Rwanda and SW Uganda (Bwindi). Descriptive notes. Head—body 92-112 mm, tail 73-95 mm, ear 15-19 mm, hindfoot 18-23 mm; weight 29-43 g. Similar to other species in subgenus Kivumys, the Western Rift Brush-furred Rat has unspeckled pelage, and tail ¢.85% of head-body length. Dorsum is uniform dark brown-olive, and venter is orange. Females have three pairs of mammae. Habitat. Mountain swamps and mountain forests at elevations of 1850-2500 m. Food and Feeding. The Western Rift Brush-furred Rat is omnivorous; diets contain 30-100% arthropods, mollusks, seeds, and fruits. Breeding. Female Western Rift Brush-furred Rats can have 1-2 embryos. Pregnant females were observed in February, April, and July. Activity patterns. The Western Rift Brush-furred Rat is terrestrial. Movements, Home range and Social organization. No information. Status and Conservation. Classified as Vulnerable on The IUCN Red List. The Western Rift Brush-furred Rat has never been found in modified secondary environment and is quite rare. Bibliography. Dieterlen (1976b, 1987 2013g), Kasangaki et al. (2003), Verheyen et al. (1996). in Muridae

Lophuromys medicaudatus, L. woosnami, and L. luteogaster are in subgenus Kivumys and woosnami species group. Monotypic. Distribution. Endemic to the Albertine Rift, occurring around Lake Kivu in E DR Congo and Rwanda and SW Uganda (Bwindi). Descriptive notes. Head—body 92-112 mm, tail 73-95 mm, ear 15-19 mm, hindfoot 18-23 mm; weight 29-43 g. Similar to other species in subgenus Kivumys, the Western Rift Brush-furred Rat has unspeckled pelage, and tail ¢.85% of head-body length. Dorsum is uniform dark brown-olive, and venter is orange. Females have three pairs of mammae. Habitat. Mountain swamps and mountain forests at elevations of 1850-2500 m. Food and Feeding. The Western Rift Brush-furred Rat is omnivorous; diets contain 30-100% arthropods, mollusks, seeds, and fruits. Breeding. Female Western Rift Brush-furred Rats can have 1-2 embryos. Pregnant females were observed in February, April, and July. Activity patterns. The Western Rift Brush-furred Rat is terrestrial. Movements, Home range and Social organization. No information. Status and Conservation. Classified as Vulnerable on The IUCN Red List. The Western Rift Brush-furred Rat has never been found in modified secondary environment and is quite rare. Bibliography. Dieterlen (1976b, 1987 2013g), Kasangaki et al. (2003), Verheyen et al. (1996).

opencc-by-4.0Aug 2022View details →

datasets for USEARCH SINTAX classifier used in dix-seq

1. datasets The datasets include : rdp_16s_v18_sp, PR2_4.14 and unite_10.05.2021 2. USERACH formatdb ../binaries/usearch -makeudb_usearch  rdp_16s_v18_sp.fasta  -output  rdp_16s_v18_sp.udb ../binaries/usearch -makeudb_usearch  PR2_4.14.fasta  -output  PR2_4.14.udb ../binaries/usearch -makeudb_usearch  unite_10.05.2021.fasta  -output  unite_10.05.2021.udb   3. Preprint Dix-seq: An integrated pipeline for fast amplicon data analysis Yongjun wei, Tianqi Ren, Lei Zhang bioRxiv 2020.05.11.089748; doi: https://doi.org/10.1101/2020.05.11.089748

opencc-by-4.0Jun 2024View details →

Images of roundabouts and junctions classified and labeled using the Labelme tool.

The dataset consists of 2000 PNG images (512 x 512 pixels) of roundabouts and junctions, with different dimensions and orientations. This dataset has been created to train a convolutional neural network for object detection (roundabouts and junctions) in various areas of the Community of Madrid. This series of images has been obtained from the National Plan of Aerial Orthophotography (PNOA), and they will be classified and identified using the Labelme tool. Therefore, in addition to the .png format images, there are also .json files that contain the labels that have been created and identified in each of the downloaded images. These data are classified into 7 types of classes: normal roundabouts (rotondaN), roundabouts split into junctions (rotondaEn), T-junctions without island (enlaceTsi), T-junctions with island (enlaceTci), U-turn junctions (enlaceTA), crossings, and lane change junctions (enlaceBI2). The procedure followed is as follows: 1. Using the QGIS tool, a geopackage file was created to mark the different areas where an image was to be downloaded. 2. Using a Python script, requests are made to the PNOA to download images. 3. The various roundabouts and junctions obtained are labeled and classified. 4. If more variability or data is needed, the process is repeated. The shared dataset consists of a compressed file with the images and labels used for the completion of a final degree project.

opencc-by-4.0Jun 2024View details →

Counter DataSet Public | Cloaked Classifiers: Pseudonymization Strategies on Sensitive Classification Tasks (

<h1>Cloaked Classifiers: Pseudonymization Strategies on Sensitive Classification Tasks (Counter DataSet)</h1> Official repository of Counter DataSet, the pseudoanonymized dataset for Radicalization Detection with Named Entity Recognition annotations. You can read the paper <a>here</a> Annotated examples for every language are avilable in the folder 'Examples'. WARNING: The datasets contain content that is racist, sexist, homophobic, and offensive in many other ways. Training and test sets available filling in this <a href="https://forms.gle/7bprpid1fFqKakrz6" target="_blank" rel="nofollow noreferrer noopener">form</a>; an email notification will be sent with instructions and details about how to download the data. Please cite our paper in any published work that uses any of these resources. <div> <pre><code>@inproceedings{, title = {Cloaked Classifiers: Pseudonymization Strategies on Sensitive Classification Tasks}, author = {Arij Riabi, Menel Mahamdi, Virginie Mouilleron, Djamé Seddah}, booktitle = {Proceedings of the fifth Workshop on Privacy in Natural Language Processing}, year = {2024}, location = {Bangkok, Thailand}, }</code></pre> </div> Contact If you have any questions please contact <code>djame dot seddah at inria dot fr</code> or <code>arij dot riabi at inria dot fr</code>. Maintainers: <code>djame dot seddah at inria dot fr</code> <code>arijriabi96 at gmail dot com</code> https://counter-project.eu/ <code>This project has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 101021607. The contents of this website are the sole responsibility of the CounteR consortium and can in no way be taken to reflect the views of the European Union.</code>

opencc-by-4.0Jun 2018View details →

Dataset from the study: "Brain Haemorrhage Detection using a SVM Classifier with Electrical Impedance Tomography Measurement Frames"

This repository contains the scripts and other resources used in: “Brain Haemorrhage Detection using a SVM Classifier with Electrical Impedance Tomography Measurement Frames”, McDermott B et al. 10.1371/journal.pone.0200469   >> THIS DATA IS FREE FOR USE IN ANY SCIENTIFIC RESEARCH WITH CITATION (PLEASE USE THE DOI FOR PRECISE CITATION): DOI 10.1371/journal.pone.0200469   >> IF YOU USE THESE RESOURCES, CITE!!!   The repository contains the code and resources to generate the EIT Measurement Frames used in Numerical Models (STL models, code to mesh, code to generate frames)   Also included are the Measurement Frames generated from the Phantom Studies.   => This is all the data (how to replicate it for numerical studies and the actual data for the phantom part) used in the study   Classifier generation, training, testing, cross validation etc uses standard MATLAB methods and resources: fitcsvm() etc.   The subfolders are ordered numerically in the logical order of use The subfolders contain text files with more details and description relevant to the contents of the respective subfolder.   Note:   Software used in this study: At a minimum the first 2 will be needed to be installed on your computer (other methods etc needed are detailed within the folders)   MATLAB 2017B (<a href="https://uk.mathworks.com/products/matlab.html">https://uk.mathworks.com/products/matlab.html</a>): The primary software tool used throughout   EIDORS (<a href="http://eidors3d.sourceforge.net/index.shtml">http://eidors3d.sourceforge.net/index.shtml</a>):  Open Source software package, compatible with MATLAB, with tools for use in Electrical Impedance Tomography studies.   Autodesk Fusion 360 (<a href="https://www.autodesk.com/products/fusion-360/overview?mktvar002=685209&mkwid=sMHGuhLcc%7Cpcrid%7C209188650131%7Cpkw%7Cfusion%20360%7Cpmt%7Ce%7Cpdv%7Cc%7Cslid%7C%7Cpgrid%7C34851227038%7Cptaid%7Ckwd-11029869505%7C&intent=&utm_medium=cpc&utm_source=google&utm_campaign=GGL_Fusion+360_IE_BR_SEM&utm_term=fusion%20360&utm_content=sMHGuhLcc%7Cpcrid%7C209188650131%7Cpkw%7Cfusion%20360%7Cpmt%7Ce%7Cpdv%7Cc%7Cslid%7C%7Cpgrid%7C34851227038%7Cptaid%7Ckwd-11029869505%7C&gclid=Cj0KCQjw1NzZBRCoARIsAIaMwut5zqUE_d7oieOvw6H3SpU45Jw7vwL5KAKqyRYW20Be6QWE-V3HaB0aAnW0EALw_wcB">https://www.autodesk.com/products/fusion-360/overview?mktvar002=685209&mkwid=sMHGuhLcc|pcrid|209188650131|pkw|fusion%20360|pmt|e|pdv|c|slid||pgrid|34851227038|ptaid|kwd-11029869505|&intent=&utm_medium=cpc&utm_source=google&utm_campaign=GGL_Fusion+360_IE_BR_SEM&utm_term=fusion%20360&utm_content=sMHGuhLcc|pcrid|209188650131|pkw|fusion%20360|pmt|e|pdv|c|slid||pgrid|34851227038|ptaid|kwd-11029869505|&gclid=Cj0KCQjw1NzZBRCoARIsAIaMwut5zqUE_d7oieOvw6H3SpU45Jw7vwL5KAKqyRYW20Be6QWE-V3HaB0aAnW0EALw_wcB</a>): Used to generate the head, brain and lesion STL files. These final STL files are provided in this repository.

FIGURE 6 in A giant African millipede re-discovered, re-located and re-classified after 120 years (Diplopoda, Spirobolida, Pachybolidae)

FIGURE 6. Right vulva of Pelmatojulus tectus (Cook, 1897), specimen from Cameroon. A. ventral view. B. lateral view. C. anterior-ventral view. D.posterior view. Abbreviations: lb = lobe of lateral valve, lv = lateral valve, mv = mesal valve, op = operculum. Scale bars = 0.5 cm (A, B), 0.2 mm (C, D).

FIGURE 4 in A giant African millipede re-discovered, re-located and re-classified after 120 years (Diplopoda, Spirobolida, Pachybolidae)

FIGURE 4. Gonopods of Pelmatoiulus tectus (Cook, 1897), specimen from Cameroon (A–C) A. Anterior gonopods, anterior view. B. Anterior gonopods, posterior view. C. Left posterior gonopod, anterior view. Abbreviations: cx = coxa, lo = apical lobe of telopodite, sf = sigmoid flange of telopodite, st = sternum, tlp = telopodite. Scale bars = 1 mm.

FIGURE 3 in A giant African millipede re-discovered, re-located and re-classified after 120 years (Diplopoda, Spirobolida, Pachybolidae)

FIGURE 3. Gonopods of Pelmatojulus tectus (Cook, 1897) (A–D) and P. togoensis (Cook, 1897) (E–G), after Cook (1899), rearranged. A, E. Anterior gonopods, anterior view. B: Anterior gonopods, posterior view. C, F. right posterior gonopod, anterior view. D, G. right posterior gonopod, posterior view. Not drawn to scale.

FIGURE 5. Pelmatoiulus spp., left posterior gonopod. A, B in A giant African millipede re-discovered, re-located and re-classified after 120 years (Diplopoda, Spirobolida, Pachybolidae)

FIGURE 5. Pelmatoiulus spp., left posterior gonopod. A, B: P. tectus (Cook, 1897), male from Cameroon. C, D: P. togoensis (Cook, 1897), male from Ghana. A, C: anterior view. B, D: apical lobe with efferent canal. Abbreviations: al = apical lobe, cn = constriction, eg = efferent groove, pr = basal process, sa = striate area, sl = subapical lobe. Scale bars: 1 mm (A, B), 0.5 mm (B, D).