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352
datasets available to search
ShareScore release 0.9.0
Dataset results
352 results for “data enrichment”
Data from: Compounded perturbations in coastal areas: contrasting responses to nutrient enrichment and the regime of storm-related disturbance depend on life-history traits
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Data from: Teasing apart plant community responses to N enrichment: the roles of resource limitation, competition and soil microbes
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Data from: Multilocus phylogeny of Gryllus field crickets (Orthoptera: Gryllidae: Gryllinae) utilizing anchored hybrid enrichment
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Data from: Assessing the effects of iron enrichment across holobiont compartments reveals reduced microbial nitrogen fixation in the Red Sea coral Pocillopora verrucosa
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Data from: Resolving phylogenetic relationships of the recently radiated carnivorous plant genus Sarracenia using target enrichment
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Data from: Heterochromatin-enriched assemblies reveal the sequence and organization of the Drosophila melanogaster Y chromosome
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Data from: Using targeted enrichment of nuclear genes to increase phylogenetic resolution in the neotropical rain forest genus Inga (Leguminosae: Mimosoideae)
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Data from: Bolstered physical defences under nutrient-enriched conditions may facilitate a secondary foundational algal species in the South Pacific
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Data from: A phylogeny of birds based on over 1,500 loci collected by target enrichment and high-throughput sequencing
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Data from: Mowing exacerbates the loss of ecosystem stability under nitrogen enrichment in a temperate grassland
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Data from: Climate modifies response of non-native and native species richness to nutrient enrichment
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A phylogenomic perspective on gene tree conflict and character evolution in Caprifoliaceae using target enrichment data, with Zabelioideae recognized as a new subfamily
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Data from: Anchored hybrid enrichment provides new insights into the phylogeny and evolution of longhorned beetles (Cerambycidae)
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Data from: Foliar fungal pathogen inhibition increases ecosystem carbon sequestration independently of nitrogen enrichment in a Tibetan alpine meadow
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Data from: Tropical forest restoration enriches vascular epiphyte recovery
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Data from "Leveraging mouse chromatin data for heritability enrichment informs common disease architecture and reveals cortical layer contributions to schizophrenia"
<p>All the data is from the final version of a paper exploring schizophrenia heritability with mouse chromatin data. The manuscript is entitled:</p> <p>"Leveraging mouse chromatin data for heritability enrichment informs common disease architecture and reveals cortical layer contributions to schizophrenia"</p> <p>The published manuscript can be found here: To be updated soon</p> <p>bioRxiv versions of the manuscript can be found here: <a href="https://www.biorxiv.org/content/10.1101/427484v1">https://www.biorxiv.org/content/10.1101/427484</a></p> <p>Code for analyzing and producing data can be found on GitHub: <a href="https://github.com/pwh124/open_chromatin">https://github.com/pwh124/open_chromatin</a></p>
Data from: The effects of nutrient enrichment and invasive mollusks on freshwater environments
<p><span><span><span><span><span><span><span><span><span><span><span>The effects of invasive species might be altered by anthropogenic activities such as nutrient pollution or the presence of additional invasive species with similar or unique traits. Using experimental mesocosms, we tested the separate and combined effects of three invasive mollusks (zebra mussels, Asian clams, and banded mystery snails) on freshwater environments in nutrient-poor and nutrient-enriched conditions. We predicted that in nutrient-poor conditions, single mollusk species would reduce the abundance of algae and zooplankton, but nutrient enrichment would mitigate these effects. Regardless of nutrient additions, paired bivalve species would reduce phytoplankton and zooplankton abundance, increasing periphyton biomass. Bivalves and snails paired together would reduce periphyton, phytoplankton, and zooplankton compared to communities with paired bivalve species. Finally, nutrient enrichment would increase the survival or biomass of paired bivalves and snails. Single, paired, and three co-occurring invasive mollusks did not affect algae or zooplankton abundance. Banded mystery snails reduced nutrient concentrations in high-nutrient conditions more than other invasive species, but the reduced nutrients did not affect algal abundance. Paired invasive species did not affect the survival or biomass of other invasive species. Nutrient enrichment increased the biomass of zebra mussels and mystery snails, but not Asian clams. Additionally, zebra mussel reproduction increased in the high nutrient treatment when banded mystery snails were present, but not when all three species were together. We conclude that human-induced trophic states might determine the effects that single and multiple invasive species have in freshwater environments. </span></span></span></span></span></span></span></span></span></span></span></p>
READ | Recognition and Enrichment of Archival Data
<p>1<sup>st</sup> Public Project Presentation</p>
Data from: Schneider et al. (2020). Phylogenomics of the tropical plant family Ochnaceae using targeted enrichment of nuclear genes and 250+ taxa. Taxon.
<p>DNA sequence alignments with all loci concatenated (e.g., "Alignment_concatenated_xxx_dataset") or for each locus separated (see folders "Gene_alignments_xxx_dataset"). The individual gene alignments are identified by their locus number. Numbers in the sequence headers of the fasta files correspond to the Lab IDs of specimens (see related publication for detailed voucher information). These alignments were used for the phylogenetic analyses in the related publication. The bait set contains the probe sequences used for the targeted enrichment of nuclear loci of Ochnaceae.</p>
Data from: De novo discovery and multiplexed amplification of microsatellite markers for black alder (Alnus glutinosa) and related species using SSR-enriched shotgun pyrosequencing.
Recent developments in sequencing technologies and bioinformatics analyses provide an unprecedented opportunity for cost and time effective high quality microsatellite marker discovery in non-model organisms for which no genomic information is available. Here, we use shotgun pyrosequencing of a microsatellite-enriched library to develop, for the first time, microsatellite markers for Alnus glutinosa, a keystone tree species of European riparian woodland communities. From a total of 17,855 short sequences, we identified 590 perfect microsatellites from which 392 had designed primers. A subset of 48 loci were tested for amplification, twelve of which were polymorphic in A. glutinosa. These twelve loci were successfully co-amplified in a single multiplex PCR experiment and validated for population genetics applications. In addition, ten and eight of these microsatellites were found to be transferable to the related A. incana and A. cordata species. The developed multiplex of 12 microsatellite markers therefore provides new opportunities for experimental evolutionary and forest genetics research in Alnus.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.