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534 results for “inclusion”
Extended Data Tables: Experimental constraints on Fe and S redox equilibria and kinetics in basaltic melt inclusions
<p>This record contains the Extended Data for the manuscript entitled: Experimental constraints on Fe and S redox equilibria and kinetics in basaltic melt inclusions."</p>
text-fig. 2. Recent phylogenetic hypotheses of theropod interrelationships. Note the inclusion of most basal taxa in a monophyletic Ceratosauria in a-c. a, Novas (1992a). B, Holtz (1994). c, Sereno (1997). D, Makovicky and Sues (1998). in The interrelationships and evolution of basal theropod dinosaurs
text-fig. 2. Recent phylogenetic hypotheses of theropod interrelationships. Note the inclusion of most basal taxa in a monophyletic Ceratosauria in a-c. a, Novas (1992a). B, Holtz (1994). c, Sereno (1997). D, Makovicky and Sues (1998).
Gassmann Consistency for Different Inclusion-based Effective Medium Theories: Implications for Elastic interactions and Poroelasticity
<p>This is the dataset associted with the paper published in JGR: Gassmann Consistency for Different Inclusion-based Effective Medium Theories: Implications for Elastic interactions and Poroelasticity</p>
isotopic data and inclusion data
Open the record for dataset details and reuse information.
Salmonella In Silico Typing Resource (SISTR) commandline tool database version 1.1 used by SISTR tool up to release version 1.1.2 inclusive
<h3>Context</h3> <p>Salmonella In Silico Typing Resource (<a href="https://github.com/phac-nml/sistr_cmd/tree/master">SISTR</a>) commandline tool enables the identification of the Salmonella serovar and cgMLST types of <em>Salmonella</em> from whole genome sequencing (WGS) data tby using a large database (10,000+) of <em>Salmonella</em> genomes and cgMLST profiles based on the 330 alleles. This database is the central part of the SISTR tool and contains both metadata on 2672 serovars and the corresponding antigenic formula, 84464 genomes to serovar mappings, sequences of the O, H1 and H2 antigens, 139729 cgMLST sequences and 38240 profiles with pairwise distances, MASH sketch of the 15465 genomes used for species and serovar identification.</p> <p>For more information and citation please refer to the following publication and official repository at <a href="https://github.com/phac-nml/sistr_cmd/tree/master">https://github.com/phac-nml/sistr_cmd/tree/master </a></p> <p>Note: This database was used by SISTR tool up to version 1.1.2 inclusive. From SISTR release 1.1.3 onwards the slightly modified version of this database will be used onwards with changes detailed in <a href="https://github.com/phac-nml/sistr_cmd/blob/master/CHANGELOG.md">https://github.com/phac-nml/sistr_cmd/blob/master/CHANGELOG.md</a></p> <h3>Citation</h3> <p><em>The Salmonella In Silico Typing Resource (SISTR): an open web-accessible tool for rapidly typing and subtyping draft Salmonella genome assemblies. Catherine Yoshida, Peter Kruczkiewicz, Chad R. Laing, Erika J. Lingohr, Victor P.J. Gannon, John H.E. Nash, Eduardo N. Taboada. PLoS ONE 11(1): e0147101. doi: 10.1371/journal.pone.0147101. <a href="http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0147101" rel="nofollow">http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0147101</a></em></p> <p> </p> <p> </p>
Data from the article titled Toni's Path to Leadership: A Life Dedicated to Building an Inclusive Community
<p>Project PID2020-117020GB-I00 , funded by : Ministerio de Ciencia e Innovación de España/<br>AEI/10.13039/501100011033 and by the predoctoral contracts grant for the training of PhD implemented by<br>the [grant number PRE2021-098075]</p>
INCLUSIVE DESIGN: PRINCIPLE-BASED CASE STUDIES OF THE NIGERIAN BUILT-UP SPACE
<p>Data set for Tables and figures for INCLUSIVE DESIGN: PRINCIPLE-BASED CASE STUDIES OF THE NIGERIAN BUILT-UP SPACE</p>
Morphology and mini-barcodes: The inclusion of larval sampling and NGS-based barcoding improves robustness of ecological analyses of mosquito communities
<p class="Normal0">A significant proportion of vector-borne diseases are transmitted by blood-sucking dipterans, including mosquitoes. Understanding transmission risks requires accurate identification of species across heterogenous habitats, but many cryptic and polymorphic species are overlooked when using morphological identification. Estimates of mosquito diversity are typically based on adult female trapping methods which tend to target host-seeking species and may represent a biased snapshot of community structure. Unfortunately, diversity estimates based on larval data are rarely included in mosquito ecological analyses. We carried out adult and larval sampling over six months in Singapore using an integrative approach of morphological identification and molecular delineation with mini-barcodes (313 bp) generated on a Next Generation Sequencing platform to obtain species estimates. We collected 3201 mosquitoes across 58 species (14 genera). Notably, 16 species were collected only through larval sampling and 22 species were only resolved using mini-barcodes. Of the latter we identified three morphologically similar species groups and documented several intraspecific polymorphisms. We compared adult-only data against a full dataset (adult + larval + mini-barcode). The species accumulation curves reached an asymptote for all but one site when using the latter; non-metric multidimensional scaling (NMDS) revealed that mosquito communities were only well separated when using the full dataset. Overall, the latter reflects a more defined and accurate community structure across all sites. We find that several mosquito species were generally influenced by tree cover, rainfall and presence of large water bodies, further supporting the idea that many species are niche-specific. <i>Synthesis and applications</i>. We report the first successful use of mini-barcodes on mosquitoes and demonstrate its utility in delineating multiple challenging species groups. We recommend the use of both morphological and molecular identification methods for ecological studies and vector surveillance. Misidentification in species estimation, especially for medically relevant insect groups can lead to conflicting reports and slows down vector control efforts. We provide evidence that varying sampling techniques, particularly of the larval stages for holometabolous insects, is important in generating a robust dataset for downstream analyses. Together with DNA barcoding, this integrative approach helps to minimize error cascades when designing management strategies.</p>
Inclusion and Exclusion Criteria in Software Engineering Tertiary Studies: A Systematic Mapping and Emerging Framework - Replication Package
<p>Replication Package for the paper:</p> <p>D. Costal, C. Farré, X. Franch, C. Quer. 2021. Inclusion and Exclusion Criteria in Software Engineering Tertiary<br> Studies: A Systematic Mapping and Emerging Framework. ESEM '21, <a href="https://doi.org/10.1145/3475716.3484190">https://doi.org/10.1145/3475716.3484190</a></p> <p>Please refer to the above paper if you want to cite/use this data.</p>
Cannot see the diversity for all the species: evaluating inclusion criteria for local species lists when using abundant citizen science data
Abundant citizen science data on species occurrences is becoming increasingly available and enables identifying composition of communities occurring at multiple sites with high temporal resolution. However, for species displaying temporary patterns of local occurrences, i.e. that are transient to some sites, biodiversity measures are clearly dependent on the criteria used to include species into local species lists. Using abundant opportunistic citizen science data from frequently visited wetlands we investigated the sensitivity of α- and β-diversity estimates to the use raw vs. detection-corrected data and to the use of inclusion criteria for species presence reflecting alternative site use. We tested 7 inclusion criteria (with varying number of days required to be present) on time series of daily occurrence status during a breeding season of 90 days for 77 wetland bird species. We show that even when opportunistic presence-only observation data is abundant, raw data may not produce reliable local species richness estimates and rank sites very differently in terms of species richness. Furthermore, occupancy model based - and - diversity estimates were sensitive to the inclusion criteria used. Total species lists (all species observed at least once during a season) may therefore mask diversity differences among sites in local communities of species, by e.g. including vagrant species on potentially breeding communities and change the relative rank order of sites in terms of species richness. Very high sampling effort does not necessarily free opportunistic data from its inherent bias and can produce a pattern in which many species are observed at least once almost everywhere, thus leading to a possible paradox: the large amount of biological information may hinder its usefulness. Therefore, when prioritizing among sites to manage or preserve species diversity estimates need to be carefully related to relevant inclusion criteria depending on the diversity estimate in focus.
Figs. 4–6. Ocyolinus principalis, aedeagus. 4 in An Update to the Diagnosis and Key to the Species of Ocyolinus Sharp (Coleoptera: Staphylinidae: Staphylininae: Staphylinini), with the Inclusion of Torobus principalis (Bernhauer)
Figs. 4–6. Ocyolinus principalis, aedeagus. 4) Lateral view; 5) Dorsal view; 6) Paramere, ventral view.
Dataset about how children with neuromotor disabilities deal with technological games and their needs and requirements for inclusive videogames
<p>This dataset includes answers to a survey developed in Redcap to investigate how children with neuromotor impairment deal with technology-based play and what they need to be included in an engaging ludic activity with their peers, thus defining the requirements of new accessible and inclusive videogames.</p> <p>The survey was co-designed by end users together with expert clinicians, engineers, and designers. The survey included open and closed-ended questions and 5-point Likert scales.</p> <p>The survey was distributed in April 2020.</p> <p>56 families with a child with disability answered the online survey in anonymized form. </p> <p>This dataset can be useful for videogame developers and console designers, since it gives useful suggestions for developing technologies which are enjoyable, accessible and inclusive at the same time</p>
FIGURE 4. Biological inclusions from Ain Zhalta amber outcrop. A in Ain Zhalta: A new early Barremian fossiliferous amber outcrops from central Lebanon
FIGURE 4. Biological inclusions from Ain Zhalta amber outcrop. A, Female Chironomidae (Diptera), lateral view. B, Male Chironomidae (Diptera), lateral view. C, Female Ceratopogonidae (Diptera), lateral view. D, Male Chironomidae (Diptera), parasitised by two different mites (Acari), dorsal view. E, Female Ceratopogonidae (Diptera), lateral view. Scale bars in A, B, D, and E = 0.5 mm and 0.3 mm in C.
Inclusion of Black Soldier Fly larvae in broiler chicken diet has a minor effect on caeca microbiota raw data
<p>Raw data to be published. </p>
Figure 10 in Towards completing the crocodile newts' puzzle with all-inclusive phylogeographic resources
Figure 10. Appearance of Tylototriton (Tylototriton) houi sp. nov. Top: live individual observed near the type locality (credits: Mian Hou); middle: the holotype MZL-46960 curated at the Cantonal Museum of Zoology of Lausanne (credits: CD); bottom: the type locality in Jade Dragon Snow Mountain (Hengduan massif in northern Yunnan) and observation of a larvae of the new species (credits: AH).
Figure 6 in Towards completing the crocodile newts' puzzle with all-inclusive phylogeographic resources
Figure 6. Co-evolution of key reproductive traits in crocodile newts, based on life-history information (Supporting Information, Table S3) reported on our mitochondrial phylogeny (Fig. 1). White nodes: missing data. Ancestral states (reconstructed by the parsimony method of MESQUITE) are shown on internal nodes. Photos: amplexus of T. pseudoƲerrucosus and egg clutch of E. maxiquadratus (credits: AH).
Figure 5 in Towards completing the crocodile newts' puzzle with all-inclusive phylogeographic resources
Figure 5. Nuclear phylogeny of 27 crocodile newt species based on 3.2 kb combining four nuclear introns (POM-C, RAG1, BDNF and NCX1). Species are symbol-coded by genera and colour-coded by subclades as in the mitochondrial phylogeny (Fig. 1). Photos: E. maxiquadratus and T. pseudoƲerrucosus (credits: AH).
Figure 1 in Towards completing the crocodile newts' puzzle with all-inclusive phylogeographic resources
Figure 1. Time-calibrated phylogeny of crocodile newts built from 16.2 kb of mitochondrial sequences representative of the sampled genetic diversity of all known taxa. Major clades are distinguished by symbols (squares: Echinotriton; circles: Tylototriton) and colours to visualize their geographic distributions. Photos: E. maxiquadratus and T. pseudoƲerrucosus (credits: AH).
Figure 9 in Towards completing the crocodile newts' puzzle with all-inclusive phylogeographic resources
Figure 9. Appearance of Echinotriton (Echinotriton) raffaellii sp. nov. Top: live individual observed at the type locality (credits: AH); bottom: the holotype MVZ:Herp:232187 (credits: MVZ).
Figure 2 in Towards completing the crocodile newts' puzzle with all-inclusive phylogeographic resources
Figure 2. Phylogeography of crocodile newts part I: genus Echinotriton and subgenus Tylototriton. The phylogenetic position and geographic distribution of each lineage is detailed by coloured symbols on the tree and the corresponding maps. Type localities of described taxa are indicated by stars. For T. Ʋerrucosus, we highlighted the paraphyletic position of sequences attributed to T. shanjing, as well as its type locality with asterisks.
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.