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455 results for “mushroom”
Figure 4 in Tales from the crypt: genome mining from fungarium specimens improves resolution of the mushroom tree of life
Figure 4. Consensus trees of individual gene trees. Left: extended majority-rule consensus (MRE) tree based on bootstrap replicates of individual gene analyses for all genes with no missing taxa (N = 175). Numbers above branches are internode certainty (IC) and internode certainty all (ICA) values for all individual bootstrap trees compared to the MRE tree. Numbers in bold represent nodes that are not present in the ASTRAL tree (right). Right: coalescentbased consensus tree recovered by ASTRAL using 208 single gene maximum likelihood trees from RAXML analysis. Numbers in bold above branches are IC, ICA values for all individual bootstrap trees that are not present in the MRE tree (left). Numbers below branches are bootstrap supports based on single gene bootstrap analysis (100 replicates each).
Figure 3 in Tales from the crypt: genome mining from fungarium specimens improves resolution of the mushroom tree of life
Figure 3. Phylogenetic analysis of the order Agaricales based on a 208 single copy loci combined dataset. Chronogram is based on a partitioned analysis using RAXML with branch lengths transformed to reflect time using correlated penalized likelihood. Numbers next to branches indicate percent support from 50 nonparametric bootstraps.
Figure 6. Best maximum likelihood phylogeny using a in Tales from the crypt: genome mining from fungarium specimens improves resolution of the mushroom tree of life
Figure 6. Best maximum likelihood phylogeny using a concatenated dataset of the 27 genes composing the best combination of top-ranked loci using five ranking criteria identified using measures of Tree Certainty (Salichos & Rokas, 2013). Numbers above branches (red) are bootstrap percentages based on the combined bootstrap replicates. Numbers below branches and adjacent to nodes indicate internode certainty (IC) and internode certainty all (ICA) values of the individual gene bootstrap trees compared with the best maximum likelihood tree depicted. Family/clade designations (fide Matheny et al., 2006 except 1 fide Henkel, Smith & Aime, 2010 and 2 fide Nakasone, Hibbett & Goranova, 2009) are indicated to the right of terminal labels and suborders are named with capital letters at the far right.
Figure 2 in Tales from the crypt: genome mining from fungarium specimens improves resolution of the mushroom tree of life
Figure 2. Summary of data quality. A, distribution of alignment lengths for 208 loci after GBlocks processing. B, correlation of assembly quality (N50) and percent alignment coverage.
Fig. 4 in Structures of ganorbifates C-I, seven previously undescribed lanostanoids from the mushroom Ganoderma orbiforme, and insights of computed biosynthesis with DFT
Fig. 4. NOE correlations and comparison between experimental and calculated ECD spectra for compound 1.
Fig. 5. a in Anti-neuroinflammatory polyoxygenated lanostanoids from Chaga mushroom Inonotus obliquus
Fig. 5. a) Effects of inonotusols I (2) and L (5) on LPS-induced iNOS expression by Western blot in BV2 microglia cells (The cells were pre-treated with all compounds with the concentration of 50 μM for 1 h, and subsequently incubated with 1.0 μg/mL of LPS for 24 h. The expression of iNOS was examined by Western blot). b) Molecular docking simulations of the binding of inonotusols I (2) and L (5) to iNOS. (Virtualdrug-protein complexes including inonotusols I (2) and L (5) for iNOS were obtained at lowest energy conformation. The potential hydrogen interactions between iNOS and compounds were highlighted by dashed lines.
Fig. 6 in Chemical constituents and their cytotoxicities from mushroom Tricholoma imbricatum
Fig. 6. Comparison of the calculated ECD spectra with the PCM model for 4a and 4b with the experimental spectrum of 4 in methanol.
Fig. 3 in Chemical constituents and their cytotoxicities from mushroom Tricholoma imbricatum
Fig. 3. Comparison of the calculated ECD spectra with the PCM model for 1a and 1b with the experimental spectrum of 1 in methanol.
White Button Mushroom Extract in Treating Patients With Recurrent Prostate Cancer After Local Therapy
ClinicalTrials.gov study NCT00779168. IPD Sharing: Not stated. Countries: 1. Publications: 1.
Antihyperlipidemic Effects of Oyster Mushrooms
ClinicalTrials.gov study NCT00069524. IPD Sharing: Not stated. Countries: 1. Publications: 1.
Investigating Effects in Intestinal Permeability of Rich in Beta-glucans Pleurotus Eryngii Mushrooms Fermentation Supernatants: an Ex-vivo Study
ClinicalTrials.gov study NCT05446610. IPD Sharing: NO. Countries: 1. Publications: 3.
Substituting Mushrooms for Meat to Control Body Weight
ClinicalTrials.gov study NCT01177085. IPD Sharing: Not stated. Countries: 1. Publications: 1.
Postprandial Glucose, Insulin Responses and Appetite Hormones to Dried Mushrooms
ClinicalTrials.gov study NCT04444219. IPD Sharing: Not stated. Countries: 1. Publications: 5.
Effect of Daily Consumption of a Novel Biscuit Enriched With Edible Mushrooms, on Intestinal Health-related Parameters
ClinicalTrials.gov study NCT04759625. IPD Sharing: NO. Countries: 1. Publications: 3.
A Study on the Effects of Nutritious Mushrooms in Adults With Metabolic Syndrome
ClinicalTrials.gov study NCT04081818. IPD Sharing: NO. Countries: 1. Publications: 10.
Mediterranean Diet and Mushrooms
ClinicalTrials.gov study NCT04259229. IPD Sharing: Not stated. Countries: 1. Publications: 1.
White Button Mushroom Sup for the Reduction of PSA in Pts With Biochemically Rec or Therapy Naive Fav Risk Prostate CA
ClinicalTrials.gov study NCT04519879. IPD Sharing: Not stated. Countries: 1. Publications: 1.
Cognitive, Mood, Anti-Inflammatory and Metabolic Effects of Chronic Oyster Mushroom Intervention in Older Adults
ClinicalTrials.gov study NCT06846827. IPD Sharing: NO. Countries: 1. Publications: 7.
Evaluating Vitamin D Content in Mushrooms
ClinicalTrials.gov study NCT01815437. IPD Sharing: NO. Countries: 1. Publications: 9.
Dietary Compensation With Substitution of Meat Products With White Button Mushrooms.
ClinicalTrials.gov study NCT00198770. IPD Sharing: Not stated. Countries: 1. Publications: 1.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.