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248 results for “tree of life”
3D genomics across the tree of life reveals condensin II as a determinant of architecture type [Hi-C]
GEO Series GSE163625. Homo sapiens. 2 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
3D genomics across the tree of life reveals condensin II as a determinant of architecture type
GEO Series GSE169088. Saccharomyces cerevisiae; Drosophila melanogaster; Gallus gallus; Hypsibius dujardini; Lethenteron camtschaticum; Arachis hypogaea; Agaricus bisporus; Branchiostoma lanceolatum; Xenopus laevis; Notamacropus eugenii; Pygocentrus nattereri; Cristatella mucedo; Clonorchis sinensis; Chiloscyllium punctatum; Strongylocentrotus purpuratus; Ciona intestinalis; Pleurobrachia bachei; Acropora millepora; Python bivittatus; Triticum aestivum; Caenorhabditis elegans; Aplysia californica; Aedes aegypti; Culex quinquefasciatus; Homo sapiens; Muntiacus reevesi; Muntiacus muntjak. 32 samples. Type: Other.
Diversity of cytosine methylation across the fungi tree of life
GEO Series GSE112636. Plenodomus lingam; Cryptococcus neoformans; Candida albicans; Coemansia reversa; Coemansia spiralis; Kirkomyces cordensis; Metarhizium robertsii; Pseudogymnoascus destructans; Saccharomyces cerevisiae; Aspergillus flavus; Coprinopsis cinerea; Clavispora lusitaniae; Lobosporangium transversale; Radiomyces spectabilis; Flammula alnicola; Candidozyma auris; Pyricularia oryzae KJ201; Syncephalis fuscata; Podospora anserina; Phanerodontia chrysosporium; Phycomyces blakesleeanus; Fusarium fujikuroi; Neurospora crassa; Pleurotus ostreatus; Aureobasidium pullulans; Laccaria bicolor; Uncinocarpus reesii; Parasitella parasitica; Botrytis cinerea; Tilletiopsis washingtonensis; Agaricus bisporus; Mixia osmundae; Sporobolomyces roseus; Cordyceps militaris; Wolfiporia cocos; Spinellus fusiger; Hesseltinella vesiculosa; Rhodonia placenta; Microbotryum lychnidis-dioicae; Heterobasidion irregulare. 31 samples. Type: Methylation profiling by high throughput sequencing; Third-party
Fig. 56. Part 2 in The Amphibian Tree Of Life
Fig. 56. Part 2 of anurans from the general tree (fig. 50 [insert]): Heleophrynidae and basal
Fig. 37 in The Amphibian Tree Of Life
Fig. 37. Consensus of two equally parsimonious trees from Marmayou et al. (2000) of
Fig. 4 in The Amphibian Tree Of Life
Fig. 4. Relationships of salamanders suggested by Larson and Dimmick (1993). Families
Individual encounters with neighbors are disproportionate between tree species and through life stages in a temperate mixed forest
<p>Here is data for the paper "Individual encounters with neighbors are disproportionate between tree species and through life stages in a temperate mixed forest" by Chinatsu Homma et al.</p> <p>Metadata for each ordered data is provided in “Readme.pdf”;</p> <ul> <li>01Seedlings.csv</li> <li>02Saplings2x2.csv</li> <li>02SaplingsFloodPlain.csv</li> <li>03Poles.csv</li> <li>04Adults.csv</li> <li>spCode.csv: Correspondence table between species name and species code.</li> <li>universal_color.csv: Colour code for drawing figures.</li> </ul>
Research on the Application of Decision Tree in Child Life
ClinicalTrials.gov study NCT07325890. IPD Sharing: NO. Countries: 1. Publications: 0.
Data from: Membrane proteins are dramatically less conserved than water-soluble proteins across the tree of life
Open the record for dataset details and reuse information.
Data from: The tree of life and a new classification of bony fishes
Open the record for dataset details and reuse information.
3D genomics across the tree of life reveals condensin II as a determinant of architecture type [RNA-Seq]
GEO Series GSE163640. Homo sapiens. 9 samples. Type: Expression profiling by high throughput sequencing.
Fig. 71 in The Amphibian Tree Of Life
Fig. 71. Generic changes suggested for ranid taxa that we studied. This is not exhaustive and the Systematic Comments under Ranidae in ''A Taxonomy of Living Amphibians'' should be consulted for additional taxonomic changes.
Fig. 69 in The Amphibian Tree Of Life
Fig. 69. Comparison of our bufonid parsimony results, via terminals held in common (see fig. 50, 60) with those of Pauly et al. (2004) (fig. 68). Taxa whose relative placement differs substantially between the two studies are in boldface.
Fig. 57 in The Amphibian Tree Of Life
Fig. 57. Fate of former Leptodactylidae (sensu lato) on our general tree (fig. 50 [insert]). Imbedded nonleptodactylid taxa are in bold.
Fig. 38 in The Amphibian Tree Of Life
Fig. 38. Neighborjoining tree of ranoid exemplars of Kosuch et al. (2001), which ''agreed well'' with the consensus of four equally parsimonious trees (ci 5 0.51). Underlying data were 572 bp of aligned 16S mtDNA sequences of which 221 are parsimonyinformative. Alignment was done manually using Sequencher (Applied Biosystems). Indels were treated as missing data. Taxon assignments on the right reflect the taxonomy as it existed at the time.
Fig. 46 in The Amphibian Tree Of Life
Fig. 46. Maximumlikelihood tree of Matsui et al. (2005) for East Asian ranids, based on mitochondrial 12S and 16S rRNA sequences (total of 1,283 bp). Sequence alignment was done under ClustalX (Thompson et al., 1997) with cost functions not disclosed and subsequently adjusted manually, guided by secondary structure models as suggested by Kjer (1995). Modeltest 3.06 (Posada and Crandall, 1998) was used to select nucleotide evolutionary model (GTR) assumed for analysis. Fejervarya and Buergeria were used to root the tree.
Fig. 62. Part 7 in The Amphibian Tree Of Life
Fig. 62. Part 7 of anurans from the general tree (fig. 50 [insert]): Hemisotidae, Hyperoliidae, and Arthroleptidae.
Fig. 59. Part 4 in The Amphibian Tree Of Life
Fig. 59. Part 4 of anurans from the general tree (fig. 50 [insert]): Centrolenidae, Leptodactylidae, Ceratophryidae, and Cycloramphidae.
Fig. 28 in The Amphibian Tree Of Life
Fig. 28. Maximumlikelihood tree of hyperoliid, arthroleptid, and astylosternid frogs provided by Vences et al. (2003c). A, Maximumlikelihood analysis of 12S rRNA molecule (187 informative sites) analyzed under a GTR substitution model (cost functions reported) suggested by Modeltest (Posada and Crandall, 1998). Initial alignments under Clustal software, costs not disclosed, and subsequently adjusted manually. Highly variable regions and gaps were excluded as evidence. B, Maximumlikelihood trees based on 138 informative sites of 16S rRNA molecule under a GTR substitution model (cost functions reported) for hyperoliids, arthroleptids, and astylosternids. Initial alignments were made under Clustal, costs not disclosed, and subsequently adjusted manually. Highly variable regions and gaps sites were excluded as evidence.
Fig. 66. A in The Amphibian Tree Of Life
Fig. 66. A simplied tree of our results (fig. 50) tree showing families. Numbers on branches allow branch lengths, Bremer, and jackknife values, as well as molecular synapomorphies to be identified in appendices 4 and 5. See table 5 for taxon names associated with internal numbered branches and figure
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.