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datasets available to search
ShareScore release 0.9.0
Dataset results
234 results for “vibrio”
Comparative Genomics Study of Vibrio cholerae
GEO Series GSE19108. Vibrio cholerae. 116 samples. Type: Genome variation profiling by array.
Role of AcsR in expression of the acetly-CoA synthetase gene in Vibrio vulnificus
GEO Series GSE67192. Vibrio vulnificus MO6-24/O; Vibrio vulnificus. 9 samples. Type: Expression profiling by array.
Transcriptomic analysis of Vibrio parahaemolyticus interaction with phage VpP2326.
GEO Series GSE270444. Vibrio parahaemolyticus RIMD 2210633. 6 samples. Type: Expression profiling by high throughput sequencing.
Vibrio cholerae Expression Study
GEO Series GSE38178. Vibrio cholerae. 12 samples. Type: Expression profiling by array.
The minimum low-salt stimulon in Vibrio parahaemolyticus
GEO Series GSE16530. Vibrio parahaemolyticus. 2 samples. Type: Expression profiling by array.
Production of pyomelanin in the Vibrio campbellii hmgA mutant results in the repression of quorum sensing, bioluminescence and virulence
GEO Series GSE46223. Vibrio campbellii; Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920. 6 samples. Type: Expression profiling by array.
Vibrio campbellii bioluminescence and its effect on gene expression and virulence
GEO Series GSE34741. Vibrio campbellii; Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920. 6 samples. Type: Expression profiling by array.
Pacific white shrimp (Litopenaeus vannamei) hepatopancreas response to Vibrio parahaemolyticus inoculation
GEO Series GSE107698. Penaeus vannamei. 12 samples. Type: Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing.
Genetic and biochemical analyses reveal direct interactions between LitR and genes important for Vibrio fischeri physiology, including biofilm production
GEO Series GSE288643. Aliivibrio fischeri. 18 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
1.20 Å crystal structure of Vibrio alkaline phosphatase in 1.0 M NaCl, remote data
<p>Diffraction data collection frames and processing files for the crystal structure of <em>Vibrio</em> alkaline phosphatase in 1.0 M NaCl; XDS_ASCII.HKL is the final reduced reflection file. Data were collected with an X-ray wavelength of 0.976 Å at the P14 beamline at the DESY-PETRA III synchrotron in Hamburg, Germany. </p>
2.2 Å resolution anomalous diffraction data of Vibrio alkaline phosphatase, crystallised in 1.0 M NaCl
<p>2.20 Å resolution anomalous diffraction dataset for <em>Vibrio</em> alkaline phosphatase, crystallised in 1.0 M NaCl. Data were collected with an X-ray energy of 6 keV at the P14 beamline at the DESY-PETRA III synchrotron in Hamburg, Germany. This dataset was used to estimate the location of chloride ions bound to the enzyme. "NaClAnon.hkl" is the final non-merged anomalous reflection file from data processing in XDS and XSCALE.</p>
1.70 Å crystal structure of Vibrio alkaline phosphatase in complex with HEPES
<p>Diffraction data frames and processing file for the 1.70 Å crystal structure of <em>Vibrio</em> alkaline phosphatase with bound HEPES, a non-competitve inhibitor. Diffraction data were collected at the BioMAX beamline (MaxIV synchrotron, Lund, Sweden) and processed in XDS and XSCALE. "VAP-HEPESdeh.hkl" is the final processed reflections file used for phasing and refinement.</p>
2.60 Å resolution X-ray diffraction data of Vibrio alkaline phosphatase, crystallised in 1.0 M KBr
<p>2.60 Å anomalous X-ray diffraction data collected from a <em>Vibrio </em>alkaline phosphatase crystal grown in 1.0 M KBr. The data was collected at the P14 beamline (DESY, Hamburg) using an X-ray wavelength of 0.918 Å (13.5 keV). The data set includes the raw diffraction images ("AP-VAPKBr-D3_4_00001.zip"), processed unmerged reflections ("KBr_D6-3anom.hkl"), refined coordinates and electoron density ("VAPKBr_D3_refine_12.pdb" and "VAPKBr_D3_refine_12.mtz"), an anomalous CCP4 format map derived from the data ("VAPKBr_D3_map_coeffs_anom.ccp4") and XDS and XSCALE processing files.</p>
2.45 Å resolution anomalous diffraction data of Vibrio alkaline phosphatase, crystallised in 0.5 M NaCl
<p>Long wavelength (2.066 Å/6 keV) diffraction data collected from a <em>Vibrio</em> alkaline phosphatase crystal grown in 0.5 M NaCl. The data set includes the raw diffraction images ("SiM59anom_001_data_000001.zip"), the processed unmerged reflections ("SiM59anom_05NaClVAP.hkl"), a derived ccp4 anomalous map ("SiM59anom_map_coeffs_anom.ccp4") and the refined electron density and coordinates ("SiM59anom-coordinates.pdb" and "SiM59anom-reflections.mtz"). Also included are processing files from XDS and XSCALE.The diffraction data was collected at the P11 beamline (DESY, Hamburg) on the 20th of April 2020. </p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.