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3,292 results for “DNA Barcode”
Supplementary material 1 from: Raupach MJ, Rulik B, Spelda J (2022) Surprisingly high genetic divergence of the mitochondrial DNA barcode fragment (COI) within Central European woodlice species (Crustacea, Isopoda, Oniscidea). ZooKeys 1082: 103-125. https://doi.org/10.3897/zookeys.1082.69851
Barcode analysis using the BOLD workbench
Figure 1 from: Raupach MJ, Rulik B, Spelda J (2022) Surprisingly high genetic divergence of the mitochondrial DNA barcode fragment (COI) within Central European woodlice species (Crustacea, Isopoda, Oniscidea). ZooKeys 1082: 103-125. https://doi.org/10.3897/zookeys.1082.69851
Figure 1 Various woodlouse species of Germany AOniscus asellus Linnaeus, 1758 BArmadillidium nasatum Budde-Lund, 1885 CTrachelipus ratzeburgii (Brandt, 1833) DMesonicus alpicola (Heller, 1858) EPhiloscia muscorum (Scopoli, 1763) FHaplophthalmus mariae Strouhal, 1953 GArmadillidium opacum (C. Koch, 1841) HPlatyarthrus hoffmannseggii Brandt, 1833. Scale bar: 1 mm. Photograph credits: A–G Jörg Spelda H Armin Rose.
Supplementary material 3 from: Raupach MJ, Rulik B, Spelda J (2022) Surprisingly high genetic divergence of the mitochondrial DNA barcode fragment (COI) within Central European woodlice species (Crustacea, Isopoda, Oniscidea). ZooKeys 1082: 103-125. https://doi.org/10.3897/zookeys.1082.69851
Neighbor-joining topology of the BOLD workbench including BIN analysis
Figure 2 from: Raupach MJ, Rulik B, Spelda J (2022) Surprisingly high genetic divergence of the mitochondrial DNA barcode fragment (COI) within Central European woodlice species (Crustacea, Isopoda, Oniscidea). ZooKeys 1082: 103-125. https://doi.org/10.3897/zookeys.1082.69851
Figure 2 Neighbor-joining (NJ) topology of the analyzed isopod species based on Kimura 2-parameter distances. Triangles show the relative number of individual's sampled (height) and sequence divergence (width). Red triangles highlight terrestrial species with intraspecific maximum pairwise distances > 2.2%, whereas dark blue triangles indicate freshwater species with such distances. Numbers next to nodes represent non-parametric bootstrap values > 90% (1,000 replicates). Asterisks indicate species not recorded in Germany.
Figure 20 from: Boucher S, Savage J (2022) DNA barcoding of the leaf-miner flies (Diptera, Agromyzidae) of Mitaraka, French Guiana. ZooKeys 1083: 147-168. https://doi.org/10.3897/zookeys.1083.76651
Figure 20 Distribution map for BOLD records for BIN: BOLD:ADB0898 (Melanagromyza Mit-9) and BIN (BOLD:ADB9391) (Nemorimyza Mit-2). Distribution data points include Guanacaste, Costa Rica and Mitaraka, French Guiana (created with SimpleMappr).
Figure 19 from: Boucher S, Savage J (2022) DNA barcoding of the leaf-miner flies (Diptera, Agromyzidae) of Mitaraka, French Guiana. ZooKeys 1083: 147-168. https://doi.org/10.3897/zookeys.1083.76651
Figure 19 Distribution map for BOLD records for BIN: BOLD:ACJ8134 (Melanagromyza Mit-4). Distribution data points include Guanacaste, Costa Rica; Formosa, Argentina and Mitaraka, French Guiana (created with SimpleMappr).
Figure 15-16 from: Boucher S, Savage J (2022) DNA barcoding of the leaf-miner flies (Diptera, Agromyzidae) of Mitaraka, French Guiana. ZooKeys 1083: 147-168. https://doi.org/10.3897/zookeys.1083.76651
Figure 15-16 15Nemorimyza Mit-1 BUICD1564–19, head dorsal view 16Nemorimyza Mit-2 MOBIL8769–18, head latero-dorsal view.
Figure 17-18 from: Boucher S, Savage J (2022) DNA barcoding of the leaf-miner flies (Diptera, Agromyzidae) of Mitaraka, French Guiana. ZooKeys 1083: 147-168. https://doi.org/10.3897/zookeys.1083.76651
Figure 17-18 17Cerodontha Mit-1, lateral view 18Cerodontha nigrihalterata Boucher, paratype, lateral view.
Figures 13- 14 from: Boucher S, Savage J (2022) DNA barcoding of the leaf-miner flies (Diptera, Agromyzidae) of Mitaraka, French Guiana. ZooKeys 1083: 147-168. https://doi.org/10.3897/zookeys.1083.76651
Figures 13- 14 Melanagromyza Mit-10. 13 specimen BUICD1539–19, head dorsal view 14 specimen BUICD1540–19, head antero-dorsal view.
Figures 2-7 from: Boucher S, Savage J (2022) DNA barcoding of the leaf-miner flies (Diptera, Agromyzidae) of Mitaraka, French Guiana. ZooKeys 1083: 147-168. https://doi.org/10.3897/zookeys.1083.76651
Figures 2-7 (2–4) Melanagromyza Mit-2. (5–7) Melanagromyza Mit-4. 2 specimen BUICD1441–18, lateral view 3 specimen BUICD1444–18, lateral view 4 Arista showing short pubescence 5 Arista showing long pubescence 6 specimen BUIC1447–18, lateral view 7 specimen BUIC1445–18, lateral view.
Figures 8-12 from: Boucher S, Savage J (2022) DNA barcoding of the leaf-miner flies (Diptera, Agromyzidae) of Mitaraka, French Guiana. ZooKeys 1083: 147-168. https://doi.org/10.3897/zookeys.1083.76651
Figures 8-12 (8–10) abdomen (color variation) of Melanagromyza Mit-2. 8 specimen BUICD1440–18; 9 specimen BUICD1443–18 10 specimen BUICD1441–18 (11, 12) midtibial bristles (number variation) of Melanagromyza Mit-2. 11 specimen BUICD1441–18 12 specimen BUICD1444–18.
Figure 1 from: Boucher S, Savage J (2022) DNA barcoding of the leaf-miner flies (Diptera, Agromyzidae) of Mitaraka, French Guiana. ZooKeys 1083: 147-168. https://doi.org/10.3897/zookeys.1083.76651
Figure 1 Neighbor-joining tree based on K2P-distance of the 24 specimens of Mitaraka Agromyzidae for which a sequence over 400 bp were retrieved. Information includes specimen number (from Table 1), BOLD process ID, morphospecies name, BIN number and sex. Color text is used when more than one Mitaraka specimen were clustering together in the same BIN.
Fig. 12. Aphelopus malayanus Olmi, 1984 in DNA barcoding of Aphelopus Dalman (Hymenoptera, Dryinidae) from China, with descriptions of four new species
Fig. 12. Aphelopus malayanus Olmi, 1984, ♂ (SCAU 3040507). A. Habitus, dorsal view. B. Habitus, lateral view. C. Head and mesosoma, dorsal view. D. Head and mesosoma, lateral view.
Fig. 11. Aphelopus maculiceps Bergman, 1957 in DNA barcoding of Aphelopus Dalman (Hymenoptera, Dryinidae) from China, with descriptions of four new species
Fig. 11. Aphelopus maculiceps Bergman, 1957, ♂ (SCAU 3011637). A. Habitus, lateral view. B. Head and mesosoma, lateral view. C. Head and mesosoma, dorsal view. D. Head, frontal view.
Supplementary material 4 from: Krčmar S, Kučinić M, Pezzi M, Bruvo Mađarić B (2022) DNA barcoding of the horsefly fauna (Diptera, Tabanidae) of Croatia with notes on the morphology and taxonomy of selected species from Chrysopsinae and Tabaninae. ZooKeys 1087: 141-161. https://doi.org/10.3897/zookeys.1087.78707
Figure S2. NJ tree for the tribes Haematopotini and Heptatomini
Figure 3 from: Krčmar S, Kučinić M, Pezzi M, Bruvo Mađarić B (2022) DNA barcoding of the horsefly fauna (Diptera, Tabanidae) of Croatia with notes on the morphology and taxonomy of selected species from Chrysopsinae and Tabaninae. ZooKeys 1087: 141-161. https://doi.org/10.3897/zookeys.1087.78707
Figure 3 ML phylogenetic tree for the tribes Haematopotini and Heptatomini based on COI sequences of specimens sampled in this work and congeneric sequences from BOLD database of public records. The clades corresponding to MOTUs (as determined by species delimitation methods) are collapsed for simplicity; numbers on the nodes denote ML aLRT support (values lower than 0.70 are not shown). MOTUs containing sequences obtained in this study are marked in blue; the results of the species delineation methods for the newly sequenced samples are presented as vertical bars beside the respective MOTU clades (bPTP in red; ABGD in green; ASAP in yellow; classification into BOLDBINs as assigned by BIN-RESL, with newly established BINs marked in bold font).
Supplementary material 3 from: Krčmar S, Kučinić M, Pezzi M, Bruvo Mađarić B (2022) DNA barcoding of the horsefly fauna (Diptera, Tabanidae) of Croatia with notes on the morphology and taxonomy of selected species from Chrysopsinae and Tabaninae. ZooKeys 1087: 141-161. https://doi.org/10.3897/zookeys.1087.78707
Figure S1. NJ tree for the tribe Chrysopsini
Figure 2 from: Krčmar S, Kučinić M, Pezzi M, Bruvo Mađarić B (2022) DNA barcoding of the horsefly fauna (Diptera, Tabanidae) of Croatia with notes on the morphology and taxonomy of selected species from Chrysopsinae and Tabaninae. ZooKeys 1087: 141-161. https://doi.org/10.3897/zookeys.1087.78707
Figure 2 Maximum likelihood (ML) phylogenetic tree for the tribe Chrysopsini based on COI sequences of specimens sampled in this work and congeneric sequences from BOLD database of public records. The clades corresponding to MOTUs (as determined by species delimitation methods) are collapsed for simplicity; numbers on the nodes denote ML aLRT support (values lower than 0.70 are not shown). MOTUs containing sequences obtained in this study are marked in red; the results of the species delineation methods for the newly sequenced samples are presented as vertical bars beside the respective MOTU clades (bPTP in red; ABGD in green; ASAP in yellow; classification into BOLDBINs as assigned by BIN-RESL).
Supplementary material 5 from: Krčmar S, Kučinić M, Pezzi M, Bruvo Mađarić B (2022) DNA barcoding of the horsefly fauna (Diptera, Tabanidae) of Croatia with notes on the morphology and taxonomy of selected species from Chrysopsinae and Tabaninae. ZooKeys 1087: 141-161. https://doi.org/10.3897/zookeys.1087.78707
Figure S3. NJ tree for the tribes Tabanini and Diachlorini
Supplementary material 2 from: Krčmar S, Kučinić M, Pezzi M, Bruvo Mađarić B (2022) DNA barcoding of the horsefly fauna (Diptera, Tabanidae) of Croatia with notes on the morphology and taxonomy of selected species from Chrysopsinae and Tabaninae. ZooKeys 1087: 141-161. https://doi.org/10.3897/zookeys.1087.78707
COI multiple sequence alignments
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Allen Brain Atlas
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Annotated Behaviour and Observability Dataset (ABODe)
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