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FIGURE 8 in Undescribed diversity in Iberian Mutillidae (Hymenoptera): a new species of Smicromyrme Thomson, 1870 from Portugal

FIGURE 8. Head (dorsal view) and mesosoma (lateral view) of three Smicromyrme species. A–B Smicromyrme suarezi Matias sp. nov. (holotype, ex-RMC922) C–D Smicromyrme partitus (Klug in Waltl) (Carvoeira, 25.iv.2022, RMC1565) E–F Smicromyrme sulcisius Invrea (Miranda do Douro, 15.viii.2022, RMC1689). Scale bar: 0.25 mm (A–F).

FIGURE 2 in Undescribed diversity in Iberian Mutillidae (Hymenoptera): a new species of Smicromyrme Thomson, 1870 from Portugal

FIGURE 2. Smicromyrme suarezi Matias sp. nov., female (paratypes), dorsal habitus, variation. A Miranda do Douro, 16.viii.2022 (RMC1705) B serra da Nogueira, 8.vii.2018 (RMC582) C Miranda do Douro, 18.viii.2022 (RMC1709) D Carvoeira, 14.viii.2018 (RMC593) E Carvoeira, 12.viii.2019 (RMC980) F Carvoeira, 7.ix.2019 (RMC1059) G Carvoeira, 8.ix.2019 (RMC1062) H Alfrívida, 30.vii.2019 (RMC902) I Vila Nova de Milfontes, 17.vii.2019 (RMC840) J Vila Nova de Milfontes, 17.vii.2019 (RMC842). Scale bar: 1 mm.

FIGURE 3 in Undescribed diversity in Iberian Mutillidae (Hymenoptera): a new species of Smicromyrme Thomson, 1870 from Portugal

FIGURE 3. Smicromyrme suarezi Matias sp. nov., female, pygidium, variation (paratypes). A Alfrívida, 30.vii.2019 (RMC902) B Miranda do Douro, 18.viii.2022 (RMC1709) C Carvoeira, 14.viii.2018 (RMC593) D serra da Nogueira, 8.vii.2018 (RMC582) E Vila Nova de Milfontes, 17.vii.2019 (RMC840) F Vila Nova de Milfontes, 17.vii.2019 (RMC842) G Carvoeira, 12.viii.2019 (RMC980) H Rosmaninhal, 9.viii.2001 (RMC193) I Carvoeira, 7.ix.2019 (RMC1059) J Carvoeira, 8.ix.2019 (RMC1062) K Miranda do Douro, 16.viii.2022 (RMC1705) L Miranda do Douro, 18.viii.2022 (RMC1715). Scale bar: 0.1 mm.

FIGURE 1 in Undescribed diversity in Iberian Mutillidae (Hymenoptera): a new species of Smicromyrme Thomson, 1870 from Portugal

FIGURE 1.SmicromyrmesuareziMatiassp. nov., female,holotype,Alfrívida,31.vii.2019 (ex-RMC922,MNHNCENT0050744). A dorsal habitus B ventral habitus C lateral habitus D pygidium E antenna F scutellar scale G head, frontal view H head, lateral view I clypeus J pronotum, dorsal view K metasoma, lateral view. Scale bar: 1 mm (A–C), 0.2 mm (D), 0.25 mm (E–J), 0.5 mm (K).

FIGURE 9 in Undescribed diversity in Iberian Mutillidae (Hymenoptera): a new species of Smicromyrme Thomson, 1870 from Portugal

FIGURE 9. Smicromyrme partitus (Klug in Waltl), female, Carvoeira, 25.iv.2022 (RMC1565). A dorsal habitus B ventral habitus C lateral habitus D pygidium E antenna F scutellar scale G head, frontal view H head, lateral view I clypeus J pronotum, dorsal view K metasoma, lateral view. Scale bar: 1 mm (A–C), 0.2 mm (D, I), 0.25 mm (E–H, J), 0.5 mm (K).

opencc-by-4.0May 2024View details →

Neutral processes and taxonomic scale drive beta species-genetic diversity correlations in a submesophotic tropical reef fish

This dataset is associated to the following publication: Vilcot M, Faure N, Andrews KR, Bowen BW, Leprieur F, Manel S. (2024) Neutral processes and taxonomic scale drive beta species-genetic diversity correlations in a submesophotic tropical reef fish. Molecular Ecology 33, e17423. (doi:<a href="https://doi.org/10.1111/mec.17423">10.1111/mec.17423</a>)   <h2>Data:  </h2> <ul> <li> "Report_DEtel22-6705_SNP_2_ordered_Bowen.csv": SNP data from Dart Sequencing on Etelis coruscans, from Andrews et al. (2020) samples </li> <li>"PA_Mat_GaspObis.RDS": fish species presence data, gathered from an updated version of Albouy et al. (2019)</li> <li> "metadata_samples_full.csv": all Etelis coruscans sample information, from Andrews et al. (2020) and the SEAMOUNTS project </li> <li> "metadata_samples.csv": Etelis coruscans sample information, only for samples that have passed the genetic filtering and were used for subsequent analyses  </li> <li> "metadata_stations.csv": sampling station information </li> <li> "Taxonomy_Fishbase.csv": species taxonomic information, downloaded with rfishbase::load_taxa()  </li> <li> "traits_Luiz_et_al_2013.csv": species trait information from Luiz et al. (2013)   </li> </ul> <h2>Related dataset:  </h2> Etelis coruscans SNP data on samples from the SEAMOUNTS project are available at <a href="https://doi.org/10.5281/zenodo.11201065">https://doi.org/10.5281/zenodo.11201065</a> <h2>Scripts:  </h2> Scripts used to reproduce the analyses and figures of the final article are available at <a href="https://github.com/mvilcot/etelis_SGDCs">https://github.com/mvilcot/etelis_SGDCs</a>    <h2>References:  </h2> Albouy, C., Archambault, P., Appeltans, W., Araújo, M. B., Beauchesne, D., Cazelles, K., Cirtwill, A. R., Fortin, M.-J., Galiana, N., Leroux, S. J., Pellissier, L., Poisot, T., Stouffer, D. B., Wood, S. A., & Gravel, D. (2019). The marine fish food web is globally connected. Nature Ecology & Evolution, 3(8), Article 8. <a href="https://doi.org/10.1038/s41559-019-0950-y" target="_blank" rel="noopener">https://doi.org/10.1038/s41559-019-0950-y</a>    Andrews, K. R., Copus, J. M., Wilcox, C., Williams, A. J., Newman, S. J., Wakefield, C. B., & Bowen, B. W. (2020). Range-Wide population structure of 3 deepwater Eteline snappers across the Indo-Pacific Basin. Journal of Heredity, 111(5), 471‑485. <a href="https://doi.org/10.1093/jhered/esaa029" target="_blank" rel="noopener">https://doi.org/10.1093/jhered/esaa029</a>   Luiz, O. J., Allen, A. P., Robertson, D. R., Floeter, S. R., Kulbicki, M., Vigliola, L., Becheler, R., & Madin, J. S. (2013). Adult and larval traits as determinants of geographic range size among tropical reef fishes. Proceedings of the National Academy of Sciences, 110(41), 16498‑16502. <a href="https://doi.org/10.1073/pnas.1304074110" target="_blank" rel="noopener">https://doi.org/10.1073/pnas.1304074110</a>   Boettiger, C., Lang, D. T., & Wainwright, P. C. (2012). rfishbase: Exploring, manipulating and visualizing FishBase data from R. Journal of Fish Biology, 81(6), 2030‑2039. <a href="https://doi.org/10.1111/j.1095-8649.2012.03464.x" target="_blank" rel="noopener">https://doi.org/10.1111/j.1095-8649.2012.03464.x</a>

Figure 7 in Integrative taxonomy reveals unrecognised species diversity in African Corypha larks (Aves: Alaudidae)

Figure 7. Plots of the first two components of a linear discriminant analysis of songs among the six primary clades in the Corypha africana complex, excluding the type 2 song of C. a. athi (A) and songs among Corypha hypermetra (C. h. hypermetra and C. h. gallarum), C. h. kidepoensis, C. somalica and the 'type 2' song of C. a. athi (B).

Figure 8 in Integrative taxonomy reveals unrecognised species diversity in African Corypha larks (Aves: Alaudidae)

Figure 8. Summary of evidence. A, tree with support for different clades based on different datasets, labelled with the proposed new taxonomy. Symbols are explained at the top: black symbols = strong support; grey symbols = weak support; unfilled symbols = no support; white triangle with question mark = lack of data. *Restricted datasets were analysed for Corypha kidepoensis: only Cytb in the multilocus analyses, and a separate single nucleotide polymorphism (SNP)-based analysis not included in the principal component analysis (see main text). #Taxon featured in photograph. B, pairwise differentiation between all taxa, based on mitochondrial DNA, genome-wide SNPs, plumage, morphometrics, song and other behaviour. The full key and an example are at the top of the panel. For photograph credits, see Figure 4.

Figure 4 in Integrative taxonomy reveals unrecognised species diversity in African Corypha larks (Aves: Alaudidae)

Figure 4. Principal component analysis (PCA) based on seven morphometric variables: the lengths of wing, bill, tarsus, tail, hind claw and outermost primary, and the distance from the outermost primary to the wing tip. Ellipses indicate the 68% confidence interval (±1 SD) for each clade. Loadings for each trait, drawn with maps and their relative contributions across all principal components (PCs), can be viewed in the Supporting Information (Fig. S9). Photographs are by Nik Borrow (II, kidepoensis Kidepo National Park, Uganda, May; III, somalica Tuuyo Plains, Somaliland, September; VII, nyikae Nyika National Park, Malawi, December), Maans Booysen, Birding Weto, CC BY-SA 4.0 https:// creativecommons.org/licenses/by-sa/4.0, via Wikimedia Commons (VI, malbranti Longa, Angola), Paul F. Donald (Va, pallida, Caprivi Strip, Namibia, November), Emmanuel Barde Elisha (VIII, bamendae Mambilla Plateau, Nigeria), Stratton Hatfield (I, hypermetra Tsavo East National Park, Kenya, March), Peter Steward (IV, athi Nairobi National Park, Kenya, March) and The Trustees of The Natural History Museum, London (II, sharpii NHMUK, identity and collection information lacking). The taxa with photographs are also indicated by '#', and '*' for sharpii.

Figure 5 in Integrative taxonomy reveals unrecognised species diversity in African Corypha larks (Aves: Alaudidae)

Figure 5. Sonograms of songs of taxa treated as subspecies of Corypha africana, C. hypermetra and C. somalica. The strophes are numbered consecutively for precise reference in the text. Recordings: (1) Foumban-Tibati, Cameroon, BL 022A-W1CDR0000054 BD19 (Claude Chappuis); (2) Mambilla Plateau, Nigeria, ML274689 (Emmanuel Elisha); (3) Mambilla Plateau, Nigeria, ML274691 (Emmanuel Elisha); (4) Mambilla Plateau, Nigeria (Emmanuel Elisha); (5) Nyika National Park, Malawi, ML278996 (Peter Boesman); (6) Nyika National Park, Malawi, ML279004 (Peter Boesman); (7) Nyika National Park, Malawi, ML279005 (Peter Boesman); (8) Kipengere Plateau, Tanzania, ML562576011 (David Moyer); (9, 10) Kipengere Plateau, Tanzania, ML562576201 (David Moyer); (11) Minyanya plain, north-west Zambia, ML279942 = XC509007 (Peter Boesman); (12) Minyanya plain, north-west Zambia, ML279943 = XC509008 (Peter Boesman); (13) Minyanya plain, north-west Zambia, ML279957 = XC509010 (Peter Boesman); (14) Lékoni, Gabon, ML274685 (Nik Borrow); (15) south-east Gabon, Chappuis CD8 BD91 (P. Christy); (16) Lékoni, Gabon (Michael Mills); (17) Polokwane, Limpopo, South Africa, ML274677 (Per Alström); (18) Sandveld, South Africa, XC28667 (Patrik Åberg); (19) Free State, South Africa, XC536937 (Dawie de Swardt); (20) Polokwane, South Africa, ML274681 (Per Alström); (21) North West Province, South Africa, XC516080 (Frank Lambert); (22) Polokwane, Limpopo, South Africa, XC516146 (Frank Lambert); (23) Lusaka, Zambia, BL WS3371 C15 (Robert Stjernstedt); (24) Lusaka, Zambia, BL WS3371 C15 (Robert Stjernstedt); (25) Lusaka, Zambia, BL WS3371 C10 (Robert Stjernstedt); (26) Etosha National Park, Namibia, ML42945 (Linda Macaulay); (27) Etosha National Park, Namibia, ML61179 (Linda Macaulay); (28) Namutoni, Namibia, XC58667 (Charles Hesse); (29) Maasai Mara, Kenya, ML274675 (Stratton Hatfield); (30) Maasai Mara, Kenya, ML274674 (Stratton Hatfield); (31) Mara Triangle, Kenya, XC200107 (Rory Nefdt); (32) Entebbe, Uganda, ML8031 (Myles E. W. North); (33) Uganda, ML23453 (G. Stuart Keith); (34) Semliki Flats, Uganda, ML23454 (G. Stuart Keith); (35) Lake Nakuru, Rift valley, Kenya, ML8032 (Myles E. W. North); (36) Nairobi, Kenya, ML8034 (Myles E. W. North); (37) Nairobi, Kenya, ML274661 (Per Alström); (38) Lake Nakuru, Rift

Figure 3. Multilocus tree for the Corypha africana–C. sharpii–C. hypermetra–C. somalica–C in Integrative taxonomy reveals unrecognised species diversity in African Corypha larks (Aves: Alaudidae)

Figure 3. Multilocus tree for the Corypha africana–C. sharpii–C. hypermetra–C. somalica–C. ashi complex based on Bayesian analysis (BEAST) of concatenated mitochondrial and nuclear loci (5,285 bp). Posterior probabilities (PPs) are indicated at the nodes, with an asterisk indicating a PP of 1.00. Clades that are discussed in the text are labelled I–VIII and with the name of the taxon that has priority in the respective clade. The names of C. africana s.l. are in black font; the other species are in other colours (the six outgroup species are all in pale blue). The three taxa that are not present in any other analyses are indicated by a red '§'. Topological incongruence compared with other phylogenetic trees is indicated by a red '#'. The blue lines indicate the divergence times of two of the outgroup species pairs.

Figure 2 in Integrative taxonomy reveals unrecognised species diversity in African Corypha larks (Aves: Alaudidae)

Figure 2. Phylogenies of the Corypha africana–C. sharpii–C. hypermetra–C. somalica–C. ashi complex, with Corypha fasciolata as the outgroup (the more distant outgroup species Amirafra rufocinnamomea has been removed) based on the multi-species coalescent, produced within a Bayesian framework in SNAPP on 16,412 single nucleotide polymorphisms (SNPs) and single individuals per taxon (A) and with ASTRAL, summarising taxon quartets in maximum likelihood (ML) analyses of 32,000 SNPs across 626 unlinked windows for all samples (B). Node support values are posterior probabilities (PPs) for SNAPP and local PPs for ASTRAL, with an asterisk indicating a PP of 1.00. Clades that are discussed in the text are labelled I–VIII and with the name of the taxon that has priority in the respective clade. The names of C. africana s.l. are in black font; the other species are in other colours. Topological incongruence between these two trees, the Snapper species tree (Supporting Information, Fig. S3), the ML IQ-TREE tree (Supporting Information, Fig. S5) and/or the Bayesian multilocus tree (Fig. 3) are indicated by a red '#'.

Figure 6. A in Integrative taxonomy reveals unrecognised species diversity in African Corypha larks (Aves: Alaudidae)

Figure 6. A, mean and SD for eight song variables for the five primary clades in the Corypha africana complex (first song type, corresponding to Fig. 5: strophes 1–40). B, mean and SD for six song variables for type 2 song of C. a. athi, and song of Corypha hypermetra and C. somalica (corresponding to Fig. 5: strophes 41–57).

Figure 1 in Integrative taxonomy reveals unrecognised species diversity in African Corypha larks (Aves: Alaudidae)

Figure 1. Distribution of the Corypha africana–C. sharpii–C. hypermetra–C. somalica–C. ashi complex based on BirdLife International and Handbook of the Birds of the World (2020) and Kennedy and Finch (in prep.), with type localities indicated by asterisks. Note that information on distribution should be regarded with caution, because further research is required for precision and accuracy. The distributions of specific taxa are listed in Table 2, but their boundaries (particularly within and between the two large continuous ranges in southern/southwestern Africa and East Africa) are unclear and in need of updating. For example, there have been records further east in southern Tanzania and northern Mozambique (Baker and Baker 2014; Supporting Information, Fig. S1B), indicated on the map by a question mark. Some additional information on distribution can be gleaned from Supporting Information, Figure S1, which shows localities for birds that have been sampled genetically or whose song has been recorded.

Figure 24 in The complex case of the calcareous sponge Leucosolenia complicata %Porifera: Calcarea): hidden diversity in Boreal and Arctic regions with description of a new species

Figure 24. Leucosolenia somesii %Bowerbank* 1874) ZMA Por. 17572* spicule types* scanning electron microscopy. A* curved smooth diactines; B* straight spiny diactines; C* tips of diactines* I and II refer to the zones marked on A and B* white arrowheads mark spines; D* triactines; E* abnormal triactines; F* tetractines.

Figure 23 in The complex case of the calcareous sponge Leucosolenia complicata %Porifera: Calcarea): hidden diversity in Boreal and Arctic regions with description of a new species

Figure 23. Leucosolenia somesii %Bowerbank* 1874) external morphology and skeleton. A* general morphology %ZMA Por. 17572); B* skeleton of cormus %ZMA Por. 17572); C* D* spicules from BMNH 1956.4.26.35. Abbreviations: c* cormus; d* diverticulum.

Figure 22 in The complex case of the calcareous sponge Leucosolenia complicata %Porifera: Calcarea): hidden diversity in Boreal and Arctic regions with description of a new species

Figure 22. Leucosolenia creepae sp. nov. mesohyl cell types and symbiotic bacteria. A* sclerocyte; B* amoebocyte; C* D* symbiotic bacteria* morphotype 1; E* F* symbiotic bacteria* morphotype 2; G* young oocyte. Scale bars: A* B* 2 µm; C–F* 0.5 µm; G* 5 µm.Abbreviations: am* amoeboid cell; ch* choanocytes; m* mesohyl; n* nucleus; oo* oocyte; sb* symbiotic bacteria; sp* spicule.

Figure 21 in The complex case of the calcareous sponge Leucosolenia complicata %Porifera: Calcarea): hidden diversity in Boreal and Arctic regions with description of a new species

Figure 21. Leucosolenia creepae sp. nov. body wall structure and cell types of bordering tissues. A* B* semi-thin sections of body wall of sponge; C* exopinacocyte; D* endopinacocyte and myocyte* inset—bundles of myofilaments in the myocyte; E* choanocytes; F* porocyte. Scale bars: A* 50 µm; B* 20 µm; C* 2 µm; D* 5 µm; E* F* 2 µm. Abbreviations: am* amoeboid cell; ch* choanocytes; chd* choanoderm; en* endopinacocyte; ex* exopinacocyte; exp* exopinacoderm; f* flagellum; m* mesohyl; mf* myofibrils; mv* microvilli; my* myocytes; n* nucleus; oo* oocyte; ph* phagosome; po* porocyte; sb* symbiotic bacteria.

Figure 20 in The complex case of the calcareous sponge Leucosolenia complicata %Porifera: Calcarea): hidden diversity in Boreal and Arctic regions with description of a new species

Figure 20. Leucosolenia creepae sp. nov. spicule types* scanning electron microscopy. A* spiny diactines; B* tips of diactines* I* II* III* and IV refer to zones marked on A* white arrowheads mark spines; C* triactines; D* abnormal triactines; E* tetractines.

Figure 19 in The complex case of the calcareous sponge Leucosolenia complicata %Porifera: Calcarea): hidden diversity in Boreal and Arctic regions with description of a new species

Figure 19. Leucosolenia creepae sp. nov. external morphology and skeleton. A* general morphology %WS11702* holotype); B* skeleton of oscular rim %WS11762); C* skeleton of oscular tube %WS11728); D* skeleton of cormus %WS11655). Abbreviations: c* cormus; d* diverticulum; o* osculum; oc* oscular crown; ot* oscular tube.