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307 results for “Phylogenetic endemism”
Data from: Phylogenetic measures of biodiversity and neo- and paleo-endemism
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Data from: Current climate, isolation and history drive global patterns of tree phylogenetic endemism
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Data from: Phylogenetic and morphological diversity of the Etheostoma zonistium species complex with the description of a new species endemic to the Cumberland Plateau of Alabama
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Figures 6-9 from: Jiang C, Bai Y, Shi M, Liu J (2020) Rediscovery and phylogenetic relationships of the scolopendromorph centipede Mimops orientalis Kraepelin, 1903 (Chilopoda): a monotypic species of Mimopidae endemic to China, for more than one century. ZooKeys 932: 75-91. https://doi.org/10.3897/zookeys.932.51461
Figures 6-9 Head of Mimops orientalis Kraepelin, 1903 6, 7 Head and tergite 1 and 2, dorsal and ventral views 8, 9 dorsal views of the right antenna.
Figures 2-5 from: Jiang C, Bai Y, Shi M, Liu J (2020) Rediscovery and phylogenetic relationships of the scolopendromorph centipede Mimops orientalis Kraepelin, 1903 (Chilopoda): a monotypic species of Mimopidae endemic to China, for more than one century. ZooKeys 932: 75-91. https://doi.org/10.3897/zookeys.932.51461
Figures 2-5 Habitat of Mimops orientalis2, 3 Habitat at locality of M. orientalis in Taiping National Forest Park, Hu county, Shaanxi, China 4, 5 living specimens of M. orientalis.
Figures 16-18 from: Jiang C, Bai Y, Shi M, Liu J (2020) Rediscovery and phylogenetic relationships of the scolopendromorph centipede Mimops orientalis Kraepelin, 1903 (Chilopoda): a monotypic species of Mimopidae endemic to China, for more than one century. ZooKeys 932: 75-91. https://doi.org/10.3897/zookeys.932.51461
Figures 16-18 Ultimate segment and ultimate legs of Mimops orientalis16 Ventral view of the ultimate segment 17 dorsal view of the ultimate segment 18 dorsal view of ultimate legs.
Figure 1 from: Jiang C, Bai Y, Shi M, Liu J (2020) Rediscovery and phylogenetic relationships of the scolopendromorph centipede Mimops orientalis Kraepelin, 1903 (Chilopoda): a monotypic species of Mimopidae endemic to China, for more than one century. ZooKeys 932: 75-91. https://doi.org/10.3897/zookeys.932.51461
Figure 1 The current known distribution of Mimops orientalis. Two main record localities were in Shaanxi and Henan provinces, China, indicated by a red dot and a green pentagon, respectively; the red dot perhaps indicates the type locality.
Figures 10-15 from: Jiang C, Bai Y, Shi M, Liu J (2020) Rediscovery and phylogenetic relationships of the scolopendromorph centipede Mimops orientalis Kraepelin, 1903 (Chilopoda): a monotypic species of Mimopidae endemic to China, for more than one century. ZooKeys 932: 75-91. https://doi.org/10.3897/zookeys.932.51461
Figures 10-15 10 Coxosternite and forcipules of Mimops orientalis11–15 Trunk segment features of Mimops orientalis. 11 Tergites 11–13, showing paramedian sutures and spiracle 12 sternites 5–7, showing sutures 13 spiracle on segment 5 14 ventral view of legs 5–7 (right) 15 dorsal view of leg 3 (right).
Figures 23-27 from: Jiang C, Bai Y, Shi M, Liu J (2020) Rediscovery and phylogenetic relationships of the scolopendromorph centipede Mimops orientalis Kraepelin, 1903 (Chilopoda): a monotypic species of Mimopidae endemic to China, for more than one century. ZooKeys 932: 75-91. https://doi.org/10.3897/zookeys.932.51461
Figures 23-27 Ocelli characteristics of Scolopendromorpha23Mimops orientalis24Theatops chuanensis25Scolopendra mutilans26Scolopocryptops nigrimaculatus27Cryptops sp.
Figures 21- 22 from: Jiang C, Bai Y, Shi M, Liu J (2020) Rediscovery and phylogenetic relationships of the scolopendromorph centipede Mimops orientalis Kraepelin, 1903 (Chilopoda): a monotypic species of Mimopidae endemic to China, for more than one century. ZooKeys 932: 75-91. https://doi.org/10.3897/zookeys.932.51461
Figures 21- 22 Phylogenetic trees obtained from the COI, 16S, and 28S sequences 21ML tree from the analysis of the concatenated genes 22 tree from the Bayesian analysis of all genes combined. Numbers at the nodes are bootstrap percentages obtained from the ML analyses and posterior probabilities obtained from BI.
Figs. 4–5. 4 in Revision Of The Southern South American Endemic Genus Aulacopalpus Guérin-Méneville With Phylogenetic And Biogeographic Analyses Of The Subtribe Brachysternina (Coleoptera: Scarabaeidae: Rutelinae: Anoplognathini)
Figs. 4–5. 4) Head of male Aulacopalpus aconcaguensis. 5) Head of male Aulacopalpus viridis.
Fig. 3 in Revision Of The Southern South American Endemic Genus Aulacopalpus Guérin-Méneville With Phylogenetic And Biogeographic Analyses Of The Subtribe Brachysternina (Coleoptera: Scarabaeidae: Rutelinae: Anoplognathini)
Fig. 3. Aulacopalpus pilicollis male.
Fig. 11 in A new tarantula (Mygalomorphae: Theraphosidae) genus endemic from Peru with a novel genitalic morphology among theraphosinae and its phylogenetic placement
Fig. 11. Distribution map of Chinchaysuyu gen. nov. in Peru.
Figure 4 in Phylogenetic measures of biodiversity and neo- and paleo-endemism in Australian Acacia
Figure 4 | Map (a) and cluster analysis (b) showing phylogenetic similarity relationships among centres of endemism for Australian Acacia. The cluster analysis used PD-dissimilarity and a phylo-jaccard metric with link-average linkage. Areas that cluster closely, indicating that they share many branches of their phylogenetic subtrees, are shown in the same colour and lettered for reference in the text. The number given by each letter is the proportion of grid cells in that cluster that are at least partly covered by currently protected areas; Eand F, the most poorly protected, are marked with an asterisk. The arrows on the map point to the grid cells in clusters Eand F that lie completely outside of protected areas and are thus of highest conservation concern.
Figure 1 in Phylogenetic measures of biodiversity and neo- and paleo-endemism in Australian Acacia
Figure 1 | Maps showing basic biodiversity patterns in Australian Acacia. (a) SR; (b) WE; (c) PD; and (d) PE.
Spatial patterns of phylogenetic diversity and endemism in the Western Ghats, India: a case study using ancient predatory arthropods
<p><span><span><span>The Western Ghats (WG) mountain chain in peninsular India is a global biodiversity hotspot, one in which patterns of phylogenetic diversity and endemism remain to be documented across taxa. We used a well-characterized community of ancient soil predatory arthropods from the WG to understand diversity gradients, identify hotspots of endemism and conservation importance, and highlight poorly-studied areas with unique biodiversity. We compiled an occurrence dataset for 19 species of scolopendrid centipedes, which was used to predict areas of habitat suitability using bioclimatic and geomorphological variables in Maxent. We used predicted distributions and a time-calibrated species phylogeny to calculate taxonomic and phylogenetic indices of diversity, endemism and turnover. We observed a decreasing latitudinal gradient in taxonomic and phylogenetic diversity in the WG, which supports expectations from the latitudinal diversity gradient. The southern WG had the highest phylogenetic diversity and endemism, and was represented by lineages with long branch lengths as observed from relative phylogenetic diversity/endemism. These results indicate the persistence of lineages over evolutionary time in the southern WG and are consistent with predictions from the southern WG refuge hypothesis. The northern WG, despite having low phylogenetic diversity, had high values of phylogenetic endemism represented by distinct lineages as inferred from relative phylogenetic endemism. The distinct endemic lineages in this sub-region might be adapted to life in lateritic plateaus characterized by poor soil conditions and high seasonality. Sites across an important biogeographic break, the Palghat Gap, broadly grouped separately in comparisons of species turnover along the WG. The southern WG and Nilgiris, adjoining the Palghat Gap, harbour unique centipede communities, where the causal role of climate or dispersal barriers in shaping diversity remains to be investigated. Our results highlight the need to use phylogeny and distribution data while assessing diversity and endemism patterns in the WG.</span></span></span></p>
Figure 6 from: Mar-Silva AF, Arroyave J, Díaz-Jaimes P (2022) The complete mitochondrial genome of the Mexican-endemic cavefish Ophisternon infernale (Synbranchiformes, Synbranchidae): insights on patterns of selection and implications for synbranchiform phylogenetics. ZooKeys 1089: 1-23. https://doi.org/10.3897/zookeys.1089.78182
Figure 6 Phylogenetic relationships of major synbranchiform lineages. Molecular phylogeny based on comparative mitochondrial PCGs from relevant available mitogenomes and the newly generated herein for O. infernale. Troglobitic cave-dwelling species are marked with an asterisk to distinguish them from surface-dwelling ones. Outgroup taxa not shown. Colored circles on nodes indicate degree of clade support as determined by bootstrap values.
Figure 3 from: Mar-Silva AF, Arroyave J, Díaz-Jaimes P (2022) The complete mitochondrial genome of the Mexican-endemic cavefish Ophisternon infernale (Synbranchiformes, Synbranchidae): insights on patterns of selection and implications for synbranchiform phylogenetics. ZooKeys 1089: 1-23. https://doi.org/10.3897/zookeys.1089.78182
Figure 3 Secondary structure of the 22 tRNA genes of the mitochondrial genome of O. infernale predicted by tRNAScan-SE 2.0.
Figure 4 from: Mar-Silva AF, Arroyave J, Díaz-Jaimes P (2022) The complete mitochondrial genome of the Mexican-endemic cavefish Ophisternon infernale (Synbranchiformes, Synbranchidae): insights on patterns of selection and implications for synbranchiform phylogenetics. ZooKeys 1089: 1-23. https://doi.org/10.3897/zookeys.1089.78182
Figure 4 Comparison (multiple sequence alignment) of the mtDNA control region of O. infernale with those of fellow teleosts Siniperca chuatsi and Cyprinion semiplotum. The alignment displays the three canonical domains distinguished by Termination Associated Sequences (TAS) of the upstream hypervariable region (in red), central conserved domain blocks (CSB-F, CSB-E, CSB-D) (in blue), and conserved sequence blocks of the downstream hypervariable region (CSB-1, CSB-2 and CSB-3) (in green).
Figure 5 from: Mar-Silva AF, Arroyave J, Díaz-Jaimes P (2022) The complete mitochondrial genome of the Mexican-endemic cavefish Ophisternon infernale (Synbranchiformes, Synbranchidae): insights on patterns of selection and implications for synbranchiform phylogenetics. ZooKeys 1089: 1-23. https://doi.org/10.3897/zookeys.1089.78182
Figure 5 Patterns of selection in mtDNA PCGs of synbranchiform fishes. Results from KA/KS ratio analysis on mitochondrial PCGs (x-axis) in synbranchiform fishes of the families Synbranchidae (a) and Mastacembelidae (b).
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.