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Fig. 1 in High prevalence rates of Toxoplasma gondii in cat-hunted small mammals - Evidence for parasite induced behavioural manipulation in the natural environment?
Fig. 1. Spatial distribution of cat-hunted and trap-captured small mammals in Switzerland Map of Switzerland showing the number of sampled small mammals in each location and the distribution of the different groups used in the study. Groups 1–3: "cat-hunted"; Group 4 ′′trap-captured".
Fig. 4 in Prevalence, molecular characterisation and phylogenetic analyses of hydatid cysts and cysticercus tenuicollis isolates and first report of E. canadensis (G6/G7) in wild boars in Bingol province, Türkiye
Fig. 4. Haplotype network of G1/G3 haplotypes identified on the basis of partial nad5 gene (628 bp). The G1 isolates obtained in this study (Hap01-Hap04), G3 isolates (Hap05, Hap06). Hatch marks represent the number of mutations between the haplotypes and the size of circle corresponds to the frequency of each haplotype in the population. Haplotypes formed by the isolates obtained in this study are marked with an asterisk.
Fig. 3. Haplotype network for E in Prevalence, molecular characterisation and phylogenetic analyses of hydatid cysts and cysticercus tenuicollis isolates and first report of E. canadensis (G6/G7) in wild boars in Bingol province, Türkiye
Fig. 3. Haplotype network for E. canadensis (G6/G7) using cox1 gene (616 bp) sequences of different countries. The E. canadensis (G6/G7) isolate obtained in this investigation (Hap_01) and the sequences identified as G7 in the Genbank database were utilized. Circle size relative to haplotype data set frequency. Each hatch mark is representative of one nucleotide change. Haplotypes formed by the isolates obtained in this study are marked with an asterisk.
Fig. 1 in Prevalence, molecular characterisation and phylogenetic analyses of hydatid cysts and cysticercus tenuicollis isolates and first report of E. canadensis (G6/G7) in wild boars in Bingol province, Türkiye
Fig. 1. Hydatid cyst image obtained from the lung (A) and liver (B) and C. tenuicollis (C,D) image obtained from its mesentery of wild boar.
Fig. 2. Haplotype network constructed using cox1 in Prevalence, molecular characterisation and phylogenetic analyses of hydatid cysts and cysticercus tenuicollis isolates and first report of E. canadensis (G6/G7) in wild boars in Bingol province, Türkiye
Fig. 2. Haplotype network constructed using cox1 (744 bp) gene sequences of T. hydatigena. Seven haplotypes formed by the T. hydatigena isolates obtained in this study: (Hap 1-Hap 7). Circle size relative to haplotype data set frequency. Each hatch mark is representative of one nucleotide change. Haplotypes formed by the isolates obtained in this study are marked with an asterisk.
FIGURE 1 in Fossil Mysticeti from the Pleistocene of Santa Maria Island, Azores (Northeast Atlantic Ocean), and the prevalence of fossil cetaceans on oceanic islands
FIGURE 1. Top: location maps. Insert: location of the Azores archipelago in the Northeast Atlantic and location of Santa Maria Island, within the Azores Archipelago. Bottom: map of Santa Maria with the location of the most important Mio-Pliocene and Pleistocene (MIS 5e) outcrops— 1, Ponta dos Frades; 2, Cré; 3, Lagoinhas; 4, Ponta do Norte; 5, Ponta Negra; 6, Ponta do Cedro; 7, Ponta do Castelo; 8, Pedra-que-pica; 9, Vinha Velha; 10, Pedrinha da Cré; 11, Baía de Nossa Senhora; 12, Malbusca; 13, West fault of Malbusca; 14, Ichnofossil's cave; 15, Praia do Calhau; 16, Macela; 17, Prainha; 18, Figueiral; 19, Pedreira do Campo; 20, Airport.
FIGURE 2 in Fossil Mysticeti from the Pleistocene of Santa Maria Island, Azores (Northeast Atlantic Ocean), and the prevalence of fossil cetaceans on oceanic islands
FIGURE 2. Right mandibular corpus (DBUA-F 1079) belonging to a medium-large size Mysticeti. 1, dorsal view; 2, lateral view; and 3, inset magnification of unknown bone modification to the lateral surface (denoted by arrows). Abbreviation "mc" indicates the mandibular canal. Thick broken arrows show passages of the mandibular canal through the fragment.
FIGURE 3 in Fossil Mysticeti from the Pleistocene of Santa Maria Island, Azores (Northeast Atlantic Ocean), and the prevalence of fossil cetaceans on oceanic islands
FIGURE 3. Detailed composite stratigraphic column at Praia do Calhau. The numbers depicted in filled circles correspond to facies 1–7, which are described in Ávila et al. (2015).
Fig. 1 in Seasonal prevalence of queens and males in colonies of tawny crazy ants (Hymenoptera: Formicidae) in Florida
Fig. 1. Mean ± SE (n = 3–11) number of queens (including female dealates), volume of brood (mL), and number of male alates per colony, collected monthly in Gainesville (Alachua County), Florida, USA, to show monthly fluctuations within seasons designated as winter (Dec–Feb), spring (Mar–May), summer (Jun–Aug), and fall (Sep–Nov).
Fig. 2 in High prevalence of Batrachochytrium dendrobatidis in an Andean frog community (Reserva Las Gralarias, Ecuador)
Fig. 2. Significant Bd infection differences in amphibians according to reproductive modes, habitat use, and taxonomy. P values are reported for 2012 and 2013; significance is noted by ** (p <0.01) and *** (p <0.001).
Given Name Prevalence for Cumulative Gender Analysis
<p>This dataset contains the 15000 most prominent given names from Wikidata and with their calculated prevalent gender based of the genders assigned to the people in Wikidata that have those names. As well as the software components and introduction to produce an updated version of this dataset at a later point.</p> <p>Within the description of the TETTRIs Task 3.2 "Automatic mapping of taxonomic expertise", it is stated that for the various expert groups gender balance should be one of the factors to profile for. Since the analysis on the various groups should be done automatically, it is necessary to estimate the gender balance of a group without manual curation. One approach that we are considering is to do this estimate based on the given names of the identified experts. This repository lays the ground work for such an approach.</p> <p>This is clearly a heuristical approach. <strong>The data from this repository is not to be used to assess the gender of any individual</strong>, but only to determine the gender balance amongst a group of people with room for statistical errors .</p> <p>We are aware that this approach relies on many oversimplifications as well as biases in the underlying data and some of those biases and oversimplifications are addressed in the file README.md, included in the data set.</p>
CHILDHOOD OBESITY IN URBAN AND RURAL INDIA: A SYSTEMATIC REVIEW AND META-ANALYSES OF PREVALENCE STUDIES
<p><strong><span>Background:</span></strong><span> Childhood obesity has become a pressing global public health issue, particularly in low- and middle-income countries like India. This systematic review aims to investigate the prevalence of childhood obesity and its associated risk factors in urban and rural regions of India.</span></p> <p><strong><span>Methods:</span></strong><span> A comprehensive systematic search was conducted in PubMed, Embase, and Scopus databases to identify relevant English-language studies published within the past decade. Inclusion criteria included studies conducted in India, focusing on children and adolescents aged 0-18, and reporting either the prevalence of childhood obesity or related risk factors. Ten studies, comprising both cross-sectional and quantitative research designs, met these criteria.</span></p> <p><strong><span>Results:</span></strong><span> The findings reveal a significant disparity in childhood obesity prevalence between urban and rural areas of India. Urban regions exhibit notably higher rates, with a pooled prevalence estimated at 9.0% (95% CI: 2.0 to 17), compared to 4.0% (95% CI: 4.0 to 5.0) in rural areas. Risk factors associated with childhood obesity in urban settings include unhealthy dietary habits, limited physical activity, higher income levels, parental education, and attendance at private schools. In rural areas, gender, age, and household size emerged as potential risk factors.</span></p> <p><strong><span>Discussion:</span></strong><span> These findings underscore the urgent need for geographically tailored interventions to address the urban-rural disparities in childhood obesity. Lifestyle-oriented strategies promoting healthier dietary patterns and increased physical activity are essential. Gender-inclusive programs targeting both boys and girls are crucial. Future research should consider regional and cultural diversity to design more effective public health responses.</span></p> <p><strong><span>Conclusion:</span></strong><span> This systematic review provides valuable insights into the prevalence and risk factors of childhood obesity in India. It highlights the necessity for customized interventions and lifestyle adjustments to combat this escalating public health challenge and reduce disparities in health outcomes.</span></p>
Figure 4 in The trouble with flippers: a report on the prevalence of digital anomalies in Cetacea
Figure 4. Tracing (A) and radiograph (B) of the right flipper of a grey whale (Eschrichtius robustus, LACM 54543). An additional digit lies between digits IV and V, and is represented by a single rounded metacarpal and three phalanges. The dotted line indicates the extent of cartilage shared between digit IV and the anomalous digit. Tracing (C) and radiograph (D) of the flipper of a fin whale (Balaenoptera physalus, USNM 550116). Three additional phalanges are embedded in the connective tissue between digits IV and V. Scale bars: 1 cm. Key: metacarpals, dark grey; phalanges, light grey; cartilages, white; anomalous elements, black.
Figure 2 in The trouble with flippers: a report on the prevalence of digital anomalies in Cetacea
Figure 2. Illustrations of digital anomalies. A, the typical mammalian manus with five digits and a phalangeal formula of 2/3/3/3/3. B, hyperphalangy. C, polydactyly. D, polyphalangy. E, interdigital elements. Key: metacarpals (mc), dark grey; phalanges (ph), light grey; anomalous elements, black.
Figure 3 in The trouble with flippers: a report on the prevalence of digital anomalies in Cetacea
Figure 3. Published reports of cetacean digital malformations. A, cartilaginous interdigital elements in a fin whale (Balaenoptera physalus; Kükenthal, 1893). B and C, polyphalangy and an accessory ossification in two harbour porpoise (Phocoena phocoena; Kunze, 1912). D, polydactyly in the vaquita (Phocoena sinus; Ortega-Ortiz et al., 2000). E, polyphalangy in a bottlenose dolphin (Tursiops truncatus; Watson et al., 1994). F, polyphalangy in the beluga (Delphinapterus leucas; Yablokov, 1974). Illustrations are not drawn to scale. Roman numerals identify digits. Key: metacarpals, dark grey; phalanges, light grey; cartilages, white; anomalous elements, black.
Figure 7 in The trouble with flippers: a report on the prevalence of digital anomalies in Cetacea
Figure 7. Patterns of cetacean digital anomalies, and the possible developmental mechanisms that could generate these morphologies. Key: metacarpals, dark grey; phalanges, light grey; cartilages, white; anomalous elements, black.
Figure 5 in The trouble with flippers: a report on the prevalence of digital anomalies in Cetacea
Figure 5. Phalangeal fusion in tracing (A) and radiograph (B) of a common dolphin (Delphinus delphis, USNM 550041). C and D, accessory ossification in a dwarf sperm whale (Kogia sima, USNM 550482). E and F, additional metacarpal ossification centre in an Atlantic spotted dolphin (Stenella frontalis, USNM 504736). G and H, metacarpal–phalangeal and interphalangeal fusion in Gervais' beaked whale (Mesoplodon europeus, USNM 504256). Scale bars: 1 cm. Key: metacarpals, dark grey; phalanges, light grey; cartilages, white; anomalous elements, black.
Figure 1 in The trouble with flippers: a report on the prevalence of digital anomalies in Cetacea
Figure 1. The evolution of digits among tetrapods. A, the early Devonian tetrapod Tiktaalik (Shubin et al., 2006) with radials. B, Acanthostega (Coates & Clack, 1990) was the first tetrapod with digits. C, a synapsid (Carroll, 1988) displayed the canonical pentadactylous tetrapod manus. D, the pendtadactylous archaeocete cetacean Rodhocetus displayed the primitive mammalian phalangeal formula of 2/3/3/3/3 (Gingerich et al., 2001). Roman numerals indicate digit identity. Dark-grey elements are metacarpals, light-gray elements are phalanges. Radials (r) and lepitotrichia (le). Scale bars: 1 cm.
Data for: Using spatial patterns of seeds and saplings to assess the prevalence of heterospecific replacements among cloud forest canopy tree species
<p><b>Questions:</b> To gain insights into the role of species-by-species replacements in cloud forest community structuring, we asked: (1) What are the effects of the spatial distribution of standing individuals on the seed rain, soil seed bank, and sapling density and survival in this cloud forest? and (2) What is the prevalence of conspecific vs<i>.</i> heterospecific replacements in the regeneration of this forest?</p> <p><b>Location:</b> Santo Tomás Teipan, Oaxaca State, southern Mexico.</p> <p><b>Methods:</b> In a 1-ha cloud forest plot we assessed seed rain, seed bank, and sapling density and survival of four canopy tree species (<i>Chiranthodendron pentadactylon</i>, <i>Cornus disciflora</i>,<i> Quercus laurina</i>, <i>Oreopanax</i> <i>xalapensis</i>). All standing individuals of these and other tree species (dbh ≥ 2.5 cm) were mapped. We used neighbourhood models to examine the spatial patterns of the three life cycle stages relative to the spatial distribution of adults. The neighbourhood effect was assessed through the Neighbourhood Index, which integrates information on size (dbh) and distance to adults. Data analysis was based on maximum likelihood and model selection procedures.</p> <p><b>Results:</b> We found large between-species differences regarding the spatial patterns of seeds and saplings. Three species showed evidence for the Janzen-Connell effect operating at the seed (<i>C. pentadactylon</i> and <i>Q. laurina</i>) or sapling (<i>O.</i> <i>xalapensis</i>) stage. We also found support for a critical role of specific microsite factors (i.e., niche differentiation) in the regeneration of two species (<i>C. pentadactylon</i> and <i>C. disciflora</i>).</p> <p><b>Conclusions:</b> Seed and sapling distribution patterns suggest the prevalence of heterospecific replacements, and that both Janzen-Connell and niche differentiation effects contribute to this pattern. Our results largely support the notion that the prevalence of heterospecific replacements among canopy species promotes species coexistence in cloud forest.</p>
Data files for manuscript "Prevalence of hereditary tubulointerstitial kidney diseases in the German Chronic Kidney Disease study"
<p>#2021-09-19<br> #Summary<br> This ZIP-file contains the Excel files used for all analyses for the manuscript "Prevalence of hereditary tubulointerstitial kidney diseases in the German Chronic Kidney Disease study".</p> <p><br> #File structure<br> README.txt This README file.<br> File S1 ("FileS1_GCKD-ADTKD.cohort.xlsx") Cohort characteristics, sequencing quality parameters and fingerprinting results.<br> File S2 ("FileS2_GCKD-ADTKD.content.xlsx") Sequencing panel design/ content with information on gene domains used for Figure 2.<br> File S3 ("FileS3_GCKD-ADTKD.variants.xlsx") Information on small variants, CNVs and MUC1 analyses (SNaPshot and adVNTR).<br> File S4 ("FileS4_GCKD-ADTKD.simulation.xlsx") Curated variant and individual data from the Groopman study with results of the simulation for Figure 4.</p> <p><br> #Files and checksums<br> 2D6184BC145987D3EE2E0DC6873DDDDB ./README.txt<br> 10EE4C3C9D9ED6417647F26A09583820 ./FileS1_GCKD-ADTKD.cohort.xlsx<br> 9F95661845215FB7875EB053F887AB36 ./FileS2_GCKD-ADTKD.content.xlsx<br> 2AC19FBC6103CB48905F64716428AE5B ./FileS3_GCKD-ADTKD.variants.xlsx<br> 2D6184BC145987D3EE2E0DC6873DDDDB ./FileS4_GCKD-ADTKD.simulation.xlsx</p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.