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ShareScore release 0.7.1
Dataset results
306 results for “data archive”
Data from: Data archiving is a good investment
Funding agencies are reluctant to support data archiving, even though large research funders such as the National Science Foundation (NSF) and the National Institutes of Health acknowledge its importance for scientific progress. Our quantitative estimates of data reuse indicate that ongoing financial investment in data-archiving infrastructure provides a high scientific return.
Data from: Genotyping-in-Thousands by sequencing of archival fish scales reveals maintenance of genetic variation following a severe demographic contraction in kokanee salmon
<p>Historical DNA analysis of archival samples has added new dimensions to population genetic studies, enabling spatiotemporal approaches for reconstructing population histories and informing conservation management. Here we tested the efficacy of Genotyping-in-Thousands by sequencing (GT-seq) for collecting targeted single nucleotide polymorphism (SNP) genotypic data from archival scale samples, and demonstrate its application to a study of kokanee salmon (<i>Oncorhynchus nerka</i>) in Kluane National Park and Reserve (KNPR; Yukon, Canada) that underwent a severe 12-year population decline followed by a rapid rebound. We genotyped archival scales sampled pre-crash and contemporary fin clips collected post-crash, revealing high coverage (>90% average genotyping across all individuals) and low genotyping error (<0.01% within-libraries, 0.60% among-libraries) despite the relatively poor quality of recovered DNA. We observed slight decreases in expected heterozygosity, allelic diversity, and effective population size post-crash, but none were significant, suggesting genetic diversity was retained despite the severe demographic contraction. Genotypic data also revealed the genetic distinctiveness of a now extirpated population just outside of KNPR, revealing biodiversity loss at the northern edge of the species distribution. More broadly, we demonstrate GT-seq as a valuable tool for genome-wide data collection from archival samples to address basic questions in ecology and evolution, and inform applied research in wildlife conservation and fisheries management.</p>
Data Archive for Phosphorylation of SAMHD1 Thr592 increases C-terminal domain dynamics, tetramer dissociation, and ssDNA binding kinetics
<p>This archive contains all data communicated in the indicated publication.</p>
Data archiving and sharing survey
<p><span>Open data sharing</span> improves the quality and reproducibility of scholarly research<span>. </span>Open data are defined as data that can be freely used, reused, and redistributed by anyone. Open data sharing democratizes science by making data more equitably available throughout the world regardless of funding or access to other resources necessary for generating cutting-edge data.<span> For an interdisciplinary field like biological anthropology, data </span>sharing is critical since one person cannot easily collect data across multiple domains.<span> The goal of this paper is to encourage broader data sharing by exploring the state of data sharing in the field of biological anthropology. Our paper is divided into four parts: the first section describes the benefits, challenges, and emerging solutions to open data sharing; the second section presents the results of our data archiving and sharing survey that was completed by over 700 researchers; the third section presents personal experiences of data sharing by the authors; and the fourth section discusses the strengths of different types of data repositories and provides a list of recommended data repositories.</span></p> <p><span>The data archiving and sharing survey and the raw data collected from the survey are deposited here.</span></p>
Figure 3 from: Remsen D, Knapp S, Georgiev T, Stoev P, Penev L (2012) From text to structured data: Converting a word-processed floristic checklist into Darwin Core Archive format. PhytoKeys 9: 1-13. https://doi.org/10.3897/phytokeys.9.2770
Figure 3 - An updated database with final column titles and unique identifier added for each record.
NESPOMILA Open Data Archive
<p>This is an open archive of data related to the <em>New Speakers of Minority Languages: Proficiency, Variation, and Change </em>project (2021--2023), hosted at the Institute of Slavic Studies, Polish Academy of Sciences.</p> <p>Contents of the archive is detailed in the README.md and README.org files.</p> <p>The files contained in this archive were made at project end as per the funding agreement, however there's also a git repo for these data -- https://github.com/bobborges/nespomila -- check there for the most up-to-date versions of data; contribute to publicly available analyses by making a pull request.</p> <p> </p>
Data archiving for ecography
<p>bird densit from bird radar and the corresponding weather radar reflectivity factor</p>
Corona Derived Data Archive
<p>Corona Derived Data Archive</p>
Data archiving and sharing survey
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Data from: Mandated data archiving greatly improves access to research data
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Data from: Demodifying RNA for transcriptomic analyses of archival formalin-fixed paraffin-embedded samples
Open the record for dataset details and reuse information.
Data from: Data archiving is a good investment
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Data from: Who shares? Who doesn’t? Factors associated with openly archiving raw research data
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Data from: Gauging the purported costs of public data archiving for long-term population studies
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Data from: Genotyping-in-Thousands by sequencing of archival fish scales reveals maintenance of genetic variation following a severe demographic contraction in kokanee salmon
Open the record for dataset details and reuse information.
Data from: The use of archived tags in retrospective genetic analysis of fish
Open the record for dataset details and reuse information.
Remapping the SRA: Drosophila melanogaster RNA-Seq data from the Sequence Read Archive
GEO Series GSE117217. Drosophila melanogaster. 14423 samples. Type: Third-party reanalysis; Expression profiling by high throughput sequencing.
Gene profiling using archival formalin-fixed paraffin-embedded breast cancer specimens can generate informative microarray data: A comparison with matched fresh fine needle aspiration biopsy samples (
GEO Series GSE23384. Homo sapiens. 25 samples. Type: Expression profiling by array.
Data archive for the journal article "Black Carbon Aerosols in the Lower Free Troposphere are Heavily Coated in Summer but Largely Uncoated in Winter at Jungfraujoch in the Swiss Alps"
<p>Data archive for figures accompanying the journal article "Black carbon aerosols in the lower free troposphere are heavily coated in summer but largely uncoated in winter at Jungfraujoch in the Swiss Alps". In 2020 this article was accepted for publication in the journal <em>Geophysical Research Letters</em>. Data are uploaded in the form of Igor Pro experiment files (.pxp).</p>
Supporting Information and data archive for ``Testing the Electrodynamic Method to Derive Height-Integrated Ionospheric Conductances,'
<p>These files provide additional graphs and supplemental data to accompany the paper “Testing the Electrodynamic Method to Derive Height-Integrated Ionospheric Conductances,” submitted to the journal <em>Annales Geophysicae </em>(paper ID angeo-2020-60)<em>. </em> Additional information is contained in the included documents READ_ME.pdf and Supporting_Information.pdf.</p> <p> </p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.