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253
datasets available to search
ShareScore release 0.9.0
Dataset results
253 results for “functional organization”
RNA-Chromatin Interactome Reveals ncRNA Functions for Transcription Regulation in 3D Genome Organization
GEO Series GSE85764. Homo sapiens; Drosophila melanogaster. 19 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other.
Functional analysis of the methyltransferase SMYD in the single-cell model organism Tetrahymena thermophila
GEO Series GSE138246. Tetrahymena thermophila. 2 samples. Type: Expression profiling by high throughput sequencing.
Orchestrating endothelial cell fate regulation and function during multiple organs’ development, stress and aging at single cell resolution
GEO Series GSE173679. Mus musculus. 4059 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Mitotic endosomes regulate spindle organization and function via Occludin and FIP5 binding
GEO Series GSE242842. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
The microbial functional gene diversity in anaerobic digesters under different organic loadings
GEO Series GSE93419. uncultured soil microorganism; sludge metagenome. 42 samples. Type: Other.
3’ RNA-seq of whole organisms is superior to standard in cases of sparse data but inferior with respect to identified functions
GEO Series GSE214481. Danio rerio. 6 samples. Type: Expression profiling by high throughput sequencing.
3D genome organization in tissue regeneration: functional requirement of long-range chromatin loops [RNA-seq]
GEO Series GSE304453. Drosophila melanogaster. 21 samples. Type: Expression profiling by high throughput sequencing.
Nucleosome positioning and sensitivity suggest novel functional organization of the purple sea urchin (Strongylocentrotus purpuratus) genome
GEO Series GSE283453. Strongylocentrotus purpuratus. 9 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Cohesin Regulates 3D Accessible Genome Organization and Function
GEO Series GSE144505. Mus musculus. 5 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
3D genome organization in tissue regeneration: functional requirement of long-range chromatin loops [Hi-C]
GEO Series GSE304452. Drosophila melanogaster. 4 samples. Type: Other.
Organ-specific function of PPARa
GEO Series GSE8345. Mus musculus. 32 samples. Type: Expression profiling by array.
Differential effects of nitrogen addition on soil organic carbon decomposition correlate with changes in microbial C-degradation functional potentials in a Pinus tabulaeformis forest
GEO Series GSE147041. uncultured soil microorganism; Bacteria; Eukaryota; Viruses; Archaea. 16 samples. Type: Other.
Dataset: 'Functional brain dynamics are shaped by connectome n-simplicial organization'
<p>Dataset related to the manuscript 'Functional brain dynamics are shaped by connectome n-simplicial organization'. - E. Mullier, J. Vohryzek, A. Griffa, Y. Alemán-Gómez, C. Hacker, K. Hess, P. Hagmann. ____________________________________</p> <p>We provide the resting-state functional MRI time series of 120 healthy subjects. <br> The detailed steps about acquisition and preprocessing are available in the methods section of the corresponding manuscript.<br> => File: concat_ts_120subs.txt</p> <p>We also provide a binary structural connectome based on 88 healthy subjects. A connection was kept in the binary structural<br> connectome if the connection was represented in at least 50% of the subjects. <br> => File: recSC_88CTRL_th0.5_scale4_cortical.txt</p> <p>The brain was parcellated using the cortical regions of Lausanne 2008 parcellation scale 4 (Cammoun2012).<br> The labels of the regions is available in this dataset.<br> => File: LABELS_cortical_scale250.txt</p> <p>Finally, we completed the dataset with a python script to open the data.<br> => File: Script_ReadData.py</p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.