Find research datasets worth reusing

Fig. 15 in Two new species of Vaejovis (Scorpiones: Vaejovidae) belonging to the mexicanus group from Aguascalientes, Mexico, with comments on the homology and function of the hemispermatophore

Fig. 15. Vaejovis aquascalentensis Ch´avez-Samayoa and Gonz´alez-Santill´an sp. nov., habitus. A, B 6, C, D. ♀ (CNAN-S4005). A, C. Dorsal aspect. B, D. Ventral aspect. Scale bar =5 mm.

Fig. 11 in Two new species of Vaejovis (Scorpiones: Vaejovidae) belonging to the mexicanus group from Aguascalientes, Mexico, with comments on the homology and function of the hemispermatophore

Fig. 11. Leg, basitarsal and telotarsal armature under UV light (6). Dorsal (left) and Ventral (right) aspects. A. Vaejovis aguazarca Díaz-Plascencia and Gonz´alezSantill´an sp. nov. B. Vaejovis aquascalentensis Ch´avez-Samayoa and Gonz´alez-Santill´an sp. nov. C. Vaejovis tenamaztlei Contreras-F´elix, Francke and Bryson, 2015.

Fig. 12 in Two new species of Vaejovis (Scorpiones: Vaejovidae) belonging to the mexicanus group from Aguascalientes, Mexico, with comments on the homology and function of the hemispermatophore

Fig. 12. Sternite VII ventral surface ornamentation under UV light (6). A. Vaejovis aguazarca Díaz-Plascencia and Gonz´alez-Santill´an sp. nov. B. Vaejovis aquascalentensis Ch´avez-Samayoa and Gonz´alez-Santill´an sp. nov. C. Vaejovis tenamaztlei Contreras-F´elix, Francke and Bryson, 2015.

Fig. 14 in Two new species of Vaejovis (Scorpiones: Vaejovidae) belonging to the mexicanus group from Aguascalientes, Mexico, with comments on the homology and function of the hemispermatophore

Fig. 14. Telson dorsal (left) and lateral (right) aspects under UV light (6). A. Vaejovis aguazarca Díaz-Plascencia and Gonz´alez-Santill´an sp. nov. B. Vaejovis aquascalentensis Ch´avez-Samayoa and Gonz´alez-Santill´an sp. nov. C. Vaejovis tenamaztlei Contreras-F´elix, Francke and Bryson, 2015.

Fig. 13. Metasomal segments I-IV in Two new species of Vaejovis (Scorpiones: Vaejovidae) belonging to the mexicanus group from Aguascalientes, Mexico, with comments on the homology and function of the hemispermatophore

Fig. 13. Metasomal segments I-IV under UV light (6). A., D., G. Dorsal, B., E., H. Lateral, and C., F., I. Ventral aspects. A-C. Vaejovis aguazarca Díaz-Plascencia and Gonz´alez-Santill´an sp. nov. D-F. Vaejovis aquascalentensis Ch´avez-Samayoa and Gonz´alez-Santill´an sp. nov. G-I. Vaejovis tenamaztlei Contreras-F´elix, Francke and Bryson, 2015.

Fig. 10 in Two new species of Vaejovis (Scorpiones: Vaejovidae) belonging to the mexicanus group from Aguascalientes, Mexico, with comments on the homology and function of the hemispermatophore

Fig. 10. Pedipalp chela, fixed (left) and movable (right) fingers under UV light (6). A. Vaejovis aguazarca Díaz-Plascencia and Gonz´alez-Santill´an sp. nov. B. Vaejovis aquascalentensis Ch´avez-Samayoa and Gonz´alez-Santill´an sp. nov. C. Vaejovis tenamaztlei Contreras-F´elix, Francke and Bryson, 2015.

Fig. 9 in Two new species of Vaejovis (Scorpiones: Vaejovidae) belonging to the mexicanus group from Aguascalientes, Mexico, with comments on the homology and function of the hemispermatophore

Fig. 9. Pedipalp chela of Vaejovis aguazarca Díaz-Plascencia and Gonz´alezSantill´an sp. nov. under UV light (6). A. Dorsal, B. Retrolateral, C. Ventral, and D. Prolateral aspects.

Fig. 3 in Two new species of Vaejovis (Scorpiones: Vaejovidae) belonging to the mexicanus group from Aguascalientes, Mexico, with comments on the homology and function of the hemispermatophore

Fig. 3. Vaejovis aguazarca Díaz-Plascencia and Gonz´alez-Santill´an sp. nov., habitus. A, B 6, C, D. ♀ (CNAN-S4005). A, C. Dorsal aspect. B, D. Ventral aspect. Scale bar =5 mm.

Fig. 4 in Two new species of Vaejovis (Scorpiones: Vaejovidae) belonging to the mexicanus group from Aguascalientes, Mexico, with comments on the homology and function of the hemispermatophore

Fig. 4. Chelicerae dorsal and ventral aspects under UV light (6). A. Vaejovis aguazarca Díaz-Plascencia and´Gonzalez-Santillan´sp. nov. B. Vaejovis aquascalentensis Ch´avez-Samayoa and Gonz´alez-Santill´an sp. nov. C. Vaejovis tenamaztlei Contreras-F´elix, Francke and Bryson, 2015.

Fig. 7 in Two new species of Vaejovis (Scorpiones: Vaejovidae) belonging to the mexicanus group from Aguascalientes, Mexico, with comments on the homology and function of the hemispermatophore

Fig. 7. Pedipalp femur of Vaejovis aguazarca Díaz-Plascencia and Gonz´alezSantill´an sp. nov. under UV light (6). A. Dorsal, B. Retrolateral, C. Ventral, and D. Prolateral aspects.

Fig. 2 in Two new species of Vaejovis (Scorpiones: Vaejovidae) belonging to the mexicanus group from Aguascalientes, Mexico, with comments on the homology and function of the hemispermatophore

Fig. 2. Sinistral hemispermatophore, cleared of soft tissue by hand. Contralateral aspect (left) and lateral aspect (right). A. Vaejovis aguazarca Díaz-Plascencia and Gonz´alez-Santill´an sp. nov. B. Vaejovis aquascalentensis Ch´avez-Samayoa and Gonz´alez-Santill´an sp. nov. C. Vaejovis tenamaztlei Contreras-F´elix, Francke and Bryson, 2015. The tridimensional boxes are enclosing the total extension of the capsular distal carina, including the basal and distal sections delimited by the presence of the laminar hook. Abbreviations: Ac, Axial carina, Cdc, Capsular distal carina. Lac, Laminar antero-basal constriction, Lap, Laminar antero-distal process. Llc, laminar latero-distal crest.

Fig. 6 in Two new species of Vaejovis (Scorpiones: Vaejovidae) belonging to the mexicanus group from Aguascalientes, Mexico, with comments on the homology and function of the hemispermatophore

Fig. 6. Coxal region, genital operculum, and pectines under UV light. Left side (6) and right side (♀). A. Vaejovis aguazarca Díaz-Plascencia and Gonz´alez-Santill´an sp. nov. B. Vaejovis aquascalentensis Ch´avez-Samayoa and Gonz´alez-Santill´an sp. nov. C. Vaejovis tenamaztlei Contreras-F´elix, Francke and Bryson, 2015.

opencc-by-4.0Oct 2024View details →

Raw data for the article "Homologation of Alkenyl Carbonyls via a Cyclopropanation/Light-Mediated Selective C-C Cleavage Strategy"

<p>Raw NMR, IR and MS  data  for the article "Homologation of Alkenyl Carbonyls via a Cyclopropanation/Light-Mediated Selective C-C Cleavage Strategy" published in  Angewandte Chemie, International Edition, DOI: </p> <div><a href="https://doi.org/10.1002/anie.202417719">https://doi.org/10.1002/anie.202417719</a></div> <p>The number of the folders either correspond to compounds numbers in the article or the name of the folder is self-describing. All details concerning conditions and equipment for measurements can be found in the supporting information of the article. For convenience, the word file version of the supporting information can be found on the top of the raw data folder.</p>

opencc-by-4.0Sep 2024View details →

Datasets used for Automated EffortLess MicroED Graphic User Interface (AutoLEI): Tyrosine (12), MOF SU-100 (16), protein MutT homolog 1 (38) and Lysozyme (71)

<p>The <strong>Auto</strong>mated<strong> </strong>Effort<strong>L</strong>ess<strong> </strong>Micro<strong>E</strong>D<strong> </strong>Graphic User<strong> I</strong>nterface<strong> (AutoLEI)</strong> is designed to automatically process and merge batches of rotation electron diffraction datasets using <strong>XDS[1]</strong>. This GUI aims to streamline data processing and minimize the need for manual data processing.</p> <p>The four datasets below are examples used in the Automated EffortLess MicroED Graphic User Interface (AutoLEI) paper.</p> <p>GUI available: https://zenodo.org/records/15206752 </p> <p> </p> <p><strong>A. Data information</strong></p> <p>Dataset 1: Tyrosine (Small molecule), 12 datasets in total</p> <p>Dataset 2: SU-100 (Small molecule), 16 datasets in total</p> <p>Dataset 3: MutT homolog 1 (Macro molecule), 38 datasets in total</p> <p>Dataset 4: Lysozyme (Macro molecule), 71 datasets in total</p> <p> </p> <p><strong>B. Data collection </strong></p> <p><strong>Tyrosine</strong> data was collected with an ASI Timepix hybrid detector installed on a JEOL JEM-2100 (200 kV) microscope equipped with a LaB6 filament. A Gatan 914 cryo-holder is employed to collect data at cryo temperature.</p> <p>Data collection software: Instamatic.</p> <p>Electron Microscopy Center, the Department of Materials and Environmental Chemistry, Stockholm University.</p> <table> <tbody> <tr> <th>Data</th> <th>#Frame</th> <th>Step (°)</th> <th>Start (°)</th> <th>End (°)</th> <th>Rotation axis.(°)</th> <th>WL (Å)</th> <th>Camera_l (mm)</th> <th>Size1</th> <th>Size2</th> <th>Pixel Size (1/nm)</th> </tr> </tbody> <tbody> <tr> <td>data1</td> <td>415</td> <td>0.233</td> <td>-50.82</td> <td>45.44</td> <td>129.2</td> <td>0.0251</td> <td>439.48</td> <td>516</td> <td>516</td> <td>49.860</td> </tr> <tr> <td>data2</td> <td>475</td> <td>0.233</td> <td>-57.19</td> <td>53.07</td> <td>129.4</td> <td>0.0251</td> <td>439.48</td> <td>516</td> <td>516</td> <td>49.860</td> </tr> <tr> <td>data3</td> <td>139</td> <td>0.232</td> <td>-51.23</td> <td>-19.17</td> <td>128.6</td> <td>0.0251</td> <td>439.48</td> <td>516</td> <td>516</td> <td>49.860</td> </tr> <tr> <td>data4</td> <td>421</td> <td>0.233</td> <td>-50.67</td> <td>47.01</td> <td>128.9</td> <td>0.0251</td> <td>439.48</td> <td>516</td> <td>516</td> <td>49.860</td> </tr> <tr> <td>data5</td> <td>448</td> <td>0.233</td> <td>-54.51</td> <td>49.43</td> <td>130.1</td> <td>0.0251</td> <td>439.48</td> <td>516</td> <td>516</td> <td>49.860</td> </tr> <tr> <td>data6</td> <td>330</td> <td>0.233</td> <td>-54.97</td> <td>21.54</td> <td>129.1</td> <td>0.0251</td> <td>439.48</td> <td>516</td> <td>516</td> <td>49.860</td> </tr> <tr> <td>data7</td> <td>41</td> <td>0.232</td> <td>-57.39</td> <td>-48.12</td> <td>128.3</td> <td>0.0251</td> <td>439.48</td> <td>516</td> <td>516</td> <td>49.860</td> </tr> <tr> <td>data8</td> <td>459</td> <td>0.233</td> <td>-53.60</td> <td>53.03</td> <td>128.7</td> <td>0.0251</td> <td>439.48</td> <td>516</td> <td>516</td> <td>49.860</td> </tr> <tr> <td>data9</td> <td>430</td> <td>0.233</td> <td>-38.49</td> <td>61.25</td> <td>129.7</td> <td>0.0251</td> <td>439.48</td> <td>516</td> <td>516</td> <td>49.860</td> </tr> <tr> <td>data10</td> <td>509</td> <td>0.233</td> <td>-56.38</td> <td>61.91</td> <td>128.6</td> <td>0.0251</td> <td>439.48</td> <td>516</td> <td>516</td> <td>49.860</td> </tr> <tr> <td>data11</td> <td>353</td> <td>0.223</td> <td>-61.69</td> <td>16.79</td> <td>130.2</td> <td>0.0251</td> <td>439.48</td> <td>516</td> <td>516</td> <td>49.860</td> </tr> <tr> <td>data12</td> <td>514</td> <td>0.233</td> <td>-52.99</td> <td>66.36</td> <td>129.2</td> <td>0.0251</td> <td>439.48</td> <td>516</td> <td>516</td> <td>49.860</td> </tr> </tbody> </table> <p> </p> <p><strong>SU-100 </strong>data was collected with an ASI Timepix hybrid detector installed on a JEOL JEM-2100 (200 kV) microscope equipped with a LaB6 filament. A Gatan 914 cryo-holder is employed to collect data at cryo temperature.</p> <p>Data collection software: Instamatic.</p> <p>Electron Microscopy Center, the Department of Materials and Environmental Chemistry, Stockholm University.</p> <table> <tbody> <tr> <th>Data</th> <th>#Frame</th> <th>Step (°)</th> <th>Start (°)</th> <th>End (°)</th> <th>Rotation axis.(°)</th> <th>WL (Å)</th> <th>Camera_l (mm)</th> <th>Size1</th> <th>Size2</th> <th>Pixel Size (1/nm)</th> </tr> </tbody> <tbody> <tr> <td>data1</td> <td>248</td> <td>0.233</td> <td>-16.82</td> <td>40.64</td> <td>131.2</td> <td>0.0251</td> <td>439.48</td> <td>516</td> <td>516</td> <td>49.860</td> </tr> <tr> <td>data2</td> <td>486</td> <td>0.233</td> <td>-55.22</td> <td>57.62</td> <td>129.4</td> <td>0.0251</td> <td>439.48</td> <td>516</td> <td>516</td> <td>49.860</td> </tr> <tr> <td>data3</td> <td>472</td> <td>0.232</td> <td>-51.78</td> <td>57.67</td> <td>129.3</td> <td>0.0251</td> <td>439.48</td> <td>516</td> <td>516</td> <td>49.860</td> </tr> <tr> <td>data4</td> <td>399</td> <td>0.232</td> <td>-56.68</td> <td>35.79</td> <td>129.8</td> <td>0.0251</td> <td>439.48</td> <td>516</td> <td>516</td> <td>49.860</td> </tr> <tr> <td>data5</td> <td>319</td> <td>0.233</td> <td>-15.51</td> <td>58.42</td> <td>126.1</td> <td>0.0251</td> <td>439.48</td> <td>516</td> <td>516</td> <td>49.860</td> </tr> <tr> <td>data6</td> <td>302</td> <td>0.233</td> <td>-50.47</td> <td>19.52</td> <td>128.6</td> <td>0.0251</td> <td>439.48</td> <td>516</td> <td>516</td> <td>49.860</td> </tr> <tr> <td>data7</td> <td>87</td> <td>0.233</td> <td>-50.01</td> <td>-29.93</td> <td>130.2</td> <td>0.0251</td> <td>439.48</td> <td>516</td> <td>516</td> <td>49.860</td> </tr> <tr> <td>data8</td> <td>349</td> <td>0.232</td> <td>-57.04</td> <td>23.81</td> <td>130.5</td> <td>0.0251</td> <td>439.48</td> <td>516</td> <td>516</td> <td>49.860</td> </tr> <tr> <td>data9</td> <td>475</td> <td>0.233</td> <td>-48.75</td> <td>61.56</td> <td>128.8</td> <td>0.0251</td> <td>439.48</td> <td>516</td> <td>516</td> <td>49.860</td> </tr> <tr> <td>data10</td> <td>422</td> <td>0.233</td> <td>-48.35</td> <td>49.53</td> <td>128.2</td> <td>0.0251</td> <td>439.48</td> <td>516</td> <td>516</td> <td>49.860</td> </tr> <tr> <td>data11</td> <td>415</td> <td>0.233</td> <td>-57.64</td> <td>38.62</td> <td>129.0</td> <td>0.0251</td> <td>439.48</td> <td>516</td> <td>516</td> <td>49.860</td> </tr> <tr> <td>data12</td> <td>351</td> <td>0.232</td> <td>-54.26</td> <td>26.95</td> <td>128.2</td> <td>0.0251</td> <td>439.48</td> <td>516</td> <td>516</td> <td>49.860</td> </tr> <tr> <td>data13</td> <td>466</td> <td>0.233</td> <td>-53.95</td> <td>54.18</td> <td>130.2</td> <td>0.0251</td> <td>439.48</td> <td>516</td> <td>516</td> <td>49.860</td> </tr> <tr> <td>data14</td> <td>450</td> <td>0.233</td> <td>-51.83</td> <td>52.56</td> <td>129.0</td> <td>0.0251</td> <td>439.48</td> <td>516</td> <td>516</td> <td>49.860</td> </tr> <tr> <td>data15</td> <td>443</td> <td>0.233</td> <td>-49.31</td> <td>53.57</td> <td>129.0</td> <td>0.0251</td> <td>439.48</td> <td>516</td> <td>516</td> <td>49.860</td> </tr> <tr> <td>data16</td> <td>374</td> <td>0.233</td> <td>-39.30</td> <td>47.46</td> <td>129.3</td> <td>0.0251</td> <td>439.48</td> <td>516</td> <td>516</td> <td>49.860</td> </tr> </tbody> </table> <p> </p> <p><strong>MutT homolog 1</strong> data was collected with a CMOS CetaD detector installed on a Titan Krios G3i with an autoloader. </p> <p>Data collection software: EPUD</p> <p>Cryo-EM infrastructure unit, Scilifelab, Stockholm.</p> <table> <tbody> <tr> <th>Rotation axis.(°)</th> <th>WL (Å)</th> <th>Camera_l (mm)</th> <th>Size1</th> <th>Size2</th> <th>Pixel Size (1/nm)</th> </tr> </tbody> <tbody> <tr> <td>-6.0</td> <td>0.019687</td> <td>2487.83</td> <td>2048</td> <td>2048</td> <td>5.717</td> </tr> </tbody> </table> <p> </p> <p><strong>Lysozyme</strong> data was collected with a CMOS CetaD detector installed on a Titan Krios G2 with an autoloader. </p> <p>Data collection software: EPUD</p> <p>Cryo-EM infrastructure unit, Scilifelab, Stockholm.</p> <table> <tbody> <tr> <th>Rotation axis.(°)</th> <th>WL (Å)</th> <th>Camera_l (mm)</th> <th>Size1</th> <th>Size2</th> <th>Pixel Size (1/nm)</th> </tr> <tr> <td>-174.4</td> <td>0.01968</td> <td>1155.0</td> <td>2048</td> <td>2048</td> <td>12.318</td> </tr> </tbody> </table> <p><strong>C. Reference</strong></p> <p>[1] Kabsch. W. “XDS”, <em>ACTA CRYSTALLOGRAPHICA SECTION D</em>, 2010</p>

opencc-by-4.0Oct 2021View details →

BactPrep: A user-friendly whole-genome sequencing analysis platform for the detection of homologous recombination and horizontal gene transfer in bacteria - Sample Dataset

<p>This is the dataset used as the sample dataset for the pipeline BactPrep. This dataset consists of 218 <em>Streptococcus pneumoniae</em>  PMEN1 WGS assemblies collected from the year 1984 - 2008 from 22 unique countries globally. The raw sequencing data was originally published in the work: Rapid pneumococcal evolution in response to clinical interventions (doi: 10.1371/journal.ppat.1002745) under the bioproject PRJEB2085.</p> <p>We have assembled the raw sequences records with the following steps: 1) raw reads were first quality checked using fastQC 0.11.9; 2) adapters and low quality reads were removed using Trimmomatic 0.39 with parameter “ILLUMINACLIP:TruSeq2-PE.fa:2:30:10:2:keepBothReads LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36”; 3) trimmed reads were error-corrected and assembled into WGS assemblies using SPAdes 3.15.0 with parameters "--careful --mismatch-correction”.</p>

dryad32/100

Deep cis-regulatory homology of the butterfly wing pattern groundplan

<p>Butterfly wing patterns derive from a deeply conserved developmental groundplan, yet are highly diverse and evolve rapidly. It is poorly understood how gene regulatory architectures can accommodate both deep homology and adaptive change. To address this, we characterized the cis-regulatory evolution of the groundplan gene <em>WntA</em> in nymphalid butterflies. Comparative ATAC-seq and <em>in vivo</em> knockouts of 46 <em>Cis</em>-Regulatory Elements (CREs) across five species revealed extensive sequence homology of groundplan CREs, except in monarch butterflies. Most CRE perturbation assays showed effects spanning multiple elements and encoding both positive and negative regulatory functionality. Our results provide little support for models predicting rapid turnover of single-trait enhancers and suggest morphological change within a tissue is achieved by tuning deeply conserved and highly sensitive networks of interdependent CREs.</p>

opencc-zeroOct 2022View details →

FIGURE 13 in Description of Tottonophyes enigmatica gen. nov., sp. nov. (Hydrozoa, Siphonophora, Calycophorae), with a reappraisal of the function and homology of nectophoral canals

FIGURE 13. Phylogram of Siphonophora, including Tottonophyes enigmatica sp. nov. Bootstrap support values are shown at internal nodes. Unlabelled notes have 100/100 support. See methods for more information.

FIGURE 6. Photographs showing A. lateral and B in Description of Tottonophyes enigmatica gen. nov., sp. nov. (Hydrozoa, Siphonophora, Calycophorae), with a reappraisal of the function and homology of nectophoral canals

FIGURE 6. Photographs showing A. lateral and B. from distal side of posterior nectophore views of Tiburon Dive 897 holotype specimen of Tottonophyes enigmatica sp. nov. soan and sopn somatocyst of anterior and posterior nectophores, respectively. Scale bar 2 mm.

FIGURE 2 in Description of Tottonophyes enigmatica gen. nov., sp. nov. (Hydrozoa, Siphonophora, Calycophorae), with a reappraisal of the function and homology of nectophoral canals

FIGURE 2. Schematic representations of canal systems of calycophoran siphonophores. A. Rosacea sp., B. Chelophyes appendiculata. For annotations see Figure 1. h, hydroecium; ml. muscular attachment lamella; pcd, disjunct pedicular canal; so, somatocyst.

FIGURE 8 in Description of Tottonophyes enigmatica gen. nov., sp. nov. (Hydrozoa, Siphonophora, Calycophorae), with a reappraisal of the function and homology of nectophoral canals

FIGURE 8. Three views of an individual cormidium from Doc Ricketts Dive 105 specimen of Tottonophyes enigmatica sp. nov. The two buds (b) are marked by arrows, and are referred to in the text. Scale bars 0.5mm.