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edi48/100

Stomach contents and stable isotopes from the aquatic food web in Everglades National Park, Florida, USA, 2018-2019

Stable isotope samples were collected among habitats and between seasons at multiple sites in both Shark River Slough and Taylor Slough of Everglades National Park to represent as much of the aquatic food web as possible. Stomach contents were also recorded for many of the collected vertebrate samples. Sampling occurred between October 2018 and April 2019. These data are a follow up study to the FCE1263 data package (https://portal.edirepository.org/nis/mapbrowse?scope=knb-lter-fce&identifier=1263) following the invasion of several fishes, most notably the African Jewelfish (Rubricatochromis letourneuxi), although there are some differences in habitats sampled and overall spatial coverage. R code for analyses associated with these data are available at https://github.com/pjflood/diet_and_pond_enrichment. Data collection is complete.

openCC (other)Jan 2025View details →
edi48/100

Mangrove Leaf Litter Carbon and Nutrients from the Shark River Slough, Everglades National Park (FCE), South Florida, USA, January 2019 - ongoing

Mangrove litterfall dynamics have been monitored in all Shark River sites (SRS-4, SRS-5, SRS-6) since January 2001 using the same collection method stated in Castañeda-Moya et al. 2013 (metadata: knb-lter-fce.1195) and Danielson et al. 2017. Briefly, litterfall was collected monthly at all sites (10 baskets per site) using permanent 0.25 m2 wooden baskets supported approximately 1.3 m above the soil surface and lined with 1 mm mesh screening. Litterfall from each basket was sorted, dried, and weighed by leaf species, reproductive parts by species, and woody material. Leaf litter data from different years (2019, 2020, 2021, 2023) were selected for each site to identify species-specific foliar carbon and nutrient (N and P) content. Monthly leaf litter samples were analyzed separately by species for all years after grinding with a Wiley Mill to pass through a 40-µm mesh screen. Total leaf litter C and N contents were determined with a Carlo-Erba NA-1500 elemental analyzer (Fisons Instruments Inc., Danvers, MA, USA). Total leaf litter P was extracted using an acid-digest (HCl) extraction, and concentrations of SRP were determined by spectrophotometric analysis (Methods 365.4 and 365.2, USA EPA 1983). Litterfall data collection is ongoing every year since 2001, while C and nutrients analyses are performed every other year after 2021. See also Shark River mangrove litterfall data (knb-lter-fce.1195) on the FCE LTER website's data catalog or in the EDI repository (https://portal.edirepository.org/nis/mapbrowse?scope=knb-lter-fce&identifier=1195). References: Castañeda-Moya, E., Twilley, R. R., & Rivera-Monroy, V. H. (2013). Allocation of biomass and net primary productivity of mangrove forests along environmental gradients in the Florida Coastal Everglades, USA. Forest Ecology and Management, 307, 226-241. Danielson, T.M., V.H. Rivera-Monroy, E. Castaneda-Moya, H. Briceno, R. Travieso, B.D. Marx, E. Gaiser, and L.M. Farfan. 2017. Assessment of Everglades mangrove forest re

openCC (other)Feb 2025View details →
edi48/100

Field survey of mangrove regeneration, porewater variables, and light in mangrove forests in Everglades National Park, Florida, USA, July 2020 - August 2022

This dataset package encompasses measurements from field surveys of mangrove regeneration, porewater variables, and light conditions across six mangrove sites in the coastal Everglades. The goal of this project was to quantify mangrove regeneration of seedlings and saplings in mid- and downstream locations within three estuaries in Everglades National Park, Florida, USA. We assessed the effects of porewater variables and light conditions on the observed regeneration patterns. The package includes seven datasets: FCE1268_Porewater: Contains measurements of porewater salinity, sulfide, ammonia, nitrite, orthophosphate, and nitrate at a 30 cm depth. Porewater surveys were conducted biannually from 09-10-2020 to 05-17-2022. See also similar porewater data for Florida Coastal Everglades (FCE) long-term sites in data packages knb-lter-fce.1169 and knb-lter-fce.1171, which contain data for SRS-5 and SRS-6, available in the FCE LTER website's data catalog or the EDI repository. FCE1268_Foliar_Nutrient_Content dataset, collected in August 2022, includes measurements of foliar nutrient content (total carbon, total nitrogen, and total phosphorus) for three mangrove species (A. germinans, L. racemosa, R. mangle) of two life stages—seedlings (height < 1 m) and saplings (height ≥ 1 m and Diameter at Breast Height (DBH) < 2.5 cm). FCE1268_Light contains light intensity (foot-candle) measurements taken at 1-hour intervals from 09-18-2020 to 08-29-2022 at mangrove sites and converted photosynthetic active radiation values from an outdoor mesocosm experiment. FCE1268_Sapling_Density provides biannual count measurements of individuals at the sapling plot level (4 m^-2) within each site from 07-09-2020 to 08-29-2022. FCE1268_Seedling_Density contains biannual count measurements of individuals at the seedling plot level (m^-2) within each site from 07-07-2020 to 08-29-2022. FCE1268_Sapling_Regeneration contains height, crown area, and stem elongation measurements of tagged sapling indiv

openCC (other)Jun 2024View details →
edi48/100

Root productivity of riverine and scrub mangroves from the Shark River Slough and Taylor Slough, Everglades National Park (FCE LTER), Florida, USA, March 2024 - April 2024

Root productivity of riverine and scrub mangroves in the Florida Everglades: Mangrove root productivity in the shallow root zone (0-45 cm depth) was estimated at all Shark River (SRS-4, SRS-5, SRS-6, SRS-7) and Taylor River (TS/Ph-6, TS/Ph-7) sites in March-April 2024. Root productivity was estimated with the ingrowth core technique using the same sampling protocol previously published for the study area (Castañeda-Moya et al. 2011). Ingrowth cores (10.2 cm diameter x 45 cm length) were made of synthetic material (3 mm mesh) and filled with root-free commercial sphagnum peat moss. This material has similar soil properties (i.e., bulk density, organic matter content, total C and N) as mangrove peat in our study sites as previously reported by Castañeda-Moya et al. (2011). Ingrowth cores were installed in holes made out with a PVC coring device (10.2 cm diameter x 45 cm length). At each site, 8 ingrowth cores were deployed vertically into the soil to a depth of 45 cm and retrieved one year later (March-April 2024). After collection, ingrowth cores were processed individually and initially rinsed with water through a 1-mm screen mesh to remove soil particles and peat moss material. Live roots were separated manually based on their buoyancy, turgor, and color (Castañeda-Moya et al. 2011; Cormier et al. 2015; Medina-Calderon et al. 2021). Live roots were further sorted into three size diameter classes including fine (<2 mm), small (2-5 mm), and coarse (5-20 mm). Roots greater than 20 mm in diameter were not included in this study due to sampling limitations (i.e., core area). All root samples were oven-dried at 60°C to a constant mass and weighed. Root growth within each ingrowth core following one year of incubation was used to estimate annual root productivity (g m⁻² yr⁻¹) in the shallow root zone across all mangrove sites. All data collection and processing were funded by FCE-LTER. Data collection is complete. References: Castañeda-Moya, E., R.R. Twilley, V.H. Rivera-

openCC (other)Jul 2025View details →
edi48/100

Mangrove soil biogeochemistry and geomorphology data from Biscayne National Park, Florida, USA, 2011 - 2024

We quantified long-term changes in tidal hydrology and surface soil elevation (2011-2024) across two representative fringe mangrove forest sites (BISC-1, BISC-2) in Biscayne National Park (Florida, USA). We measured the spatiotemporal variation of monthly wrack deposition, litter breakdown rates, soil organic carbon, and stable isotope δ13C and δ15N content along landward transects in Biscayne National Park (Florida, USA) from 2022 to 2024. We surveyed marine wrack deposition biovolume monthly using a quadrat in plots along our transects. At each marine wrack survey plot, we collected soil cores seasonally to measure soil physicochemistry. Finally, we deployed leaf litter decomposition mesh bags with Rhizophora mangle leaf litter, Thalassia testudinum leaf litter, and teabag standards to quantify breakdown rates on the soil surface of each marine wrack survey plot. Data collection is complete.

openCC (other)Feb 2026View details →
edi48/100

Major Ion Concentrations in Surface Water Collected from Taylor Slough, Everglades National Park (FCE LTER), Florida, USA, December 2003 – December 2015

This package includes data of concentrations of sodium, potassium, magnesium, calcium, chloride, and sulfate in surface water samples collected from Florida Coastal Everglades Long Term Ecological Research (FCE-LTER) Program sites in Taylor Slough. These sites are TS/Ph1a (2003-2013), TS/Ph2 (2003-2012), and TS/Ph3 (2004-2015). Analyzed samples include composite samples, rainfall samples, and grab samples. Composite samples represent water collected over the course of 3 days by autosamplers programmed to draw 250 mL every 18 hours. Rainfall samples represent water collected by the autosamplers when a threshold of = 2.5 cm of rain per hour is passed. A 500 mL sample is collected 30 minutes after meeting the threshold. Composite and rainfall samples are retrieved every 3-4 weeks and returned to the Florida International University (FIU) Modesto A. Maidique campus. A grab sample is collected at each site during these visits. Cation and anion analysis were completed using ion chromatography on a Dionex DX-120. Sample preparation and analysis for major ions were completed in the Hydrogeology laboratory at FIU. This dataset is completed.

openCC (other)Dec 2025View details →
edi48/100

Biomass accumulation in trees and downed wood at Bartlett Experimental Forest, Hubbard Brook Experimental Forest, the Bowl Natural Research Area, and the White Mountain National Forest, NH, USA

Standing trees and downed wood were inventoried in all of the chronosequence stands in the White Mountains, New Hampshire to characterize biomass. Live and standing dead trees were inventoried in the chronosequence stands in 1994, 2004, 2012, and 2021. Coarse (≥ 7.6 cm diameter) and fine woody debris (3.0 – 7.6 cm) were inventoried at the same stands in 2004 and 2020. Twigs (FWD < 3.0 cm) were inventoried in 2004 and 2020. The Bowl and Mt. Pond old-growth sites were inventoried (standing trees and downed wood) in 2021.

openCC (other)Aug 2023View details →
edi48/100

ANA01 Weekly, seasonal and annual measurement of precipitation volume and chemistry collected as part of the National Atmospheric Deposition Program at Konza Prairie

Data set contains results of chemical analysis of wetfall samples collected on Konza Prairie. Analysis is done by the Central Analytical Lab (CAL), Champaign, IL as part of the National Atmospheric Deposition Program (NADP). NADP data products available on the NADP/NTN web site (nadp.slh.wisc.edu/data/NTN/) include: Annual Data Summaries, Semiannual Data Reports, Annual and Seasonal Averages, Monthly Averages, and Weekly data. Konza Prairie LTER archives and provides the weekly data in electronic form before May 2019.

openCC0Mar 2023View details →
edi48/100

NOAA's National Climatic Data Center including daily precipitation and USFS RDA datasets

This dataset was originally established as a subset of relevant NOAA daily precipitation data. This has been replaced with links to NOAA station websites which contain this data, please visit these links in the dataset file here. Previously, daily precipitation for 5 stations in or near the LEF were compiled from the NOAA National Climate Data Center and posted here. Support for this work was provided by grants BSR-8811902, DEB-9411973, DEB-9705814 , DEB-0080538, DEB-0218039 , DEB-0620910 , DEB-1239764, DEB-1546686, and DEB-1831952 from the National Science Foundation to the University of Puerto Rico as part of the Luquillo Long-Term Ecological Research Program. Additional support provided by the University of Puerto Rico and the International Institute of Tropical Forestry, USDA Forest Service.

openCC (other)Nov 2023View details →
edi48/100

NOAA's National Climatic Data Center including maximum temperature and USFS RDA datasets

This dataset was originally established as a subset of relevant NOAA monthly average maximum air temperature data. This has been replaced with links to NOAA station websites which contain this data, please visit these links in the dataset file here. Previously, maximum air temperature at two stations in or near the LEF were compiled from the NOAA National Climate Data Center and posted here. Support for this work was provided by grants BSR-8811902, DEB-9411973, DEB-9705814 , DEB-0080538, DEB-0218039 , DEB-0620910 , DEB-1239764, DEB-1546686, and DEB-1831952 from the National Science Foundation to the University of Puerto Rico as part of the Luquillo Long-Term Ecological Research Program. Additional support provided by the University of Puerto Rico and the International Institute of Tropical Forestry, USDA Forest Service.

openCC (other)Nov 2023View details →
edi48/100

NOAA's National Climatic Data Center including minimum temperature and USFS RDA datasets

This dataset was originally established as a subset of relevant NOAA monthly average minimum air temperature data. This has been replaced with links to NOAA station websites which contain this data, please visit these links in the dataset file here. Previously, minimum air temperature at two stations in or near the LEF were compiled from the NOAA National Climate Data Center and posted here. Support for this work was provided by grants BSR-8811902, DEB-9411973, DEB-9705814 , DEB-0080538, DEB-0218039 , DEB-0620910 , DEB-1239764, DEB-1546686, and DEB-1831952 from the National Science Foundation to the University of Puerto Rico as part of the Luquillo Long-Term Ecological Research Program. Additional support provided by the University of Puerto Rico and the International Institute of Tropical Forestry, USDA Forest Service.

openCC (other)Nov 2023View details →
edi48/100

Fecal glucocorticoid metabolite levels of American pika (Ochotona princeps) and habitat characteristics of their associated territories found in rock glaciers adjacent to Niwot Ridge and within Rocky Mountain National Park, 2018 - 2019.

To understand whether stress-associated hormones vary with metrics of habitat quality, we measured fecal glucocorticoid metabolite (FGM) levels in the American pika (Ochotona princeps), a small mammal with well-defined habitat (talus), that can vary in quality depending on the presence of rock ice features (RIFs). In 2018, we sampled pika scat from two types of RIFs: “active” rock glaciers thought to harbor subsurface ice recently, and “fossil” rock glaciers considered long devoid of subsurface ice (as classified by Janke 2005, 2007). Specifically, fecal pellets were collected from pika territories located in rock glaciers within eight sites along the Front Range of Colorado: four in Rocky Mountain National Park (2 active, 2 fossil) and four adjacent to Niwot Ridge (2 active, 2 fossil) (pika_fecal_glu_rg.aw.csv). To account for possible seasonal variation in pika FGM, scat samples were collected in the alpine spring and fall. To understand other influences of habitat quality on FGMs, we also measured fine-scale habitat differences between rock glaciers in 2019, including talus depth, clast size, and land cover metrics related to forage (pika_fecal_habitat_rg.aw.csv).

openCC (other)Dec 2022View details →
edi48/100

Meteorology Data from the Sevilleta National Wildlife Refuge, New Mexico

These files contain hourly meteorological data that were collected from a network of permanent weather stations on the Sevilleta National Wildlife Refuge as part of the Sevilleta Long Term Ecological Research Program.

openCC0Dec 2025View details →
edi48/100

Net Primary Productivity (NPP) Weight Data at the Sevilleta National Wildlife Refuge, New Mexico

Several long-term studies at the Sevilleta LTER measure net primary production (NPP) across ecosystems and treatments. Net primary production is a fundamental ecological variable that quantifies rates of carbon consumption and fixation. Estimates of NPP are important in understanding energy flow at a community level as well as spatial and temporal responses to a range of ecological processes. Above-ground net primary production (ANPP) is the change in plant biomass, including loss to death and decomposition, over a given period of time. To measure this change, vegetation variables, including species composition and the cover and height of individuals, are sampled up to three times yearly (winter, spring, and fall) at permanent plots within a study site. The weight data presented here is obtained by harvesting a series of covers for species observed during plot sampling. These species are always harvested from habitat comparable to the plots in which they were recorded. This data is then used to make volumetric measurements of species and build regressions correlating biomass and volume. From these calculations, seasonal biomass and seasonal and annual NPP are determined.

openCC0Aug 2021View details →
edi48/100

Larrea Seedling Monitoring Study at the Sevilleta National Wildlife Refuge, New Mexico (1999-2018)

The germination rate of creosote (Larrea tridentata) on the Sevilleta appears to be very low. During the early years of the LTER project it was attempted to quantify such germination through the use of seedling plots which were monitored on a bi-annual basis (spring and fall). During the period from 1989 through 1992 there were no creosote seedling that germinated on the monitoring plots. In 1999 a rather sizeable population of small seedlings was observed in one quite localized area in the vicinity of Five Points. This rather large number of individuals in one very limited area raised several questions:1. When did this small community of individuals germinate- the supposition is that they had all germinated at the same time.2. What conditions existed in this particular location which allowed such prolific germination when there was no indication of virtually any other germination in this vicinty.3. The most immediate question was whether these seedlings would survive through the impending La Nina winter, spring and summer as many of the individuals did not appear to be very "healthy." To help answer these questions it was decided to begin a "small" monitoring project. All of the individuals in this small area that appeared to be of the same age were marked with posts, located with GPS, measured (height) and photographed. This initial survey included 78 individuals. The population was resurveyed in August, 2000 and it was discovered that: 1. Many individuals were missed in the initial survey; 2. Most of the individuals (72 of 78) had survived the intervening 9 months; and 3. The average individual growth during this period was 1.4 cm. It is planned that this population will continue to be monitored (probably on an annual basis) to track survival and growth rate of these individuals.

openCC0Jul 2021View details →
edi48/100

Gunnison's Prairie Dog Restoration Experiment (GPDREx): Vegetation Cover Data from the Sevilleta National Wildlife Refuge, New Mexico (2011-2016)

Prairie dogs (Cynomys spp.) are burrowing rodents considered to be ecosystem engineers and keystone species of the central grasslands of North America. Yet, prairie dog populations have declined by an estimated 98% throughout their historic range. This dramatic decline has resulted in the widespread loss of their important ecological role throughout this grassland system. The 92,060 ha Sevilleta NWR in central New Mexico includes more than 54,000 ha of native grassland. Gunnison's prairie dogs (C. gunnisoni) were reported to occupy ~15,000 ha of what is now the SNWR during the 1960's, prior to their systematic eradication. In 2010, we collaborated with local agencies and conservation organizations to restore the functional role of prairie dogs to the grassland system. Gunnison's prairie dogs were reintroduced to a site that was occupied by prairie dogs 40 years ago. This work is part of a larger, long-term study where we are studying the ecological effects of prairie dogs as they re-colonize the grassland ecosystem.

openCC0Aug 2021View details →
edi48/100

Core Site Grid Quadrat Data for the Net Primary Production Study at the Sevilleta National Wildlife Refuge, New Mexico

Begun in spring 2013, this project is part of a long-term study at the Sevilleta LTER measuring net primary production (NPP) across three distinct ecosystems: creosote-dominant shrubland (Site C), black grama-dominant grassland (Site G), and blue grama-dominant grassland (Site B). Net primary production is a fundamental ecological variable that quantifies rates of carbon consumption and fixation. Estimates of NPP are important in understanding energy flow at a community level as well as spatial and temporal responses to a range of ecological processes. Above-ground net primary production is the change in plant biomass, represented by stems, flowers, fruit and foliage, over time and incorporates growth as well as loss to death and decomposition. To measure this change the vegetation variables in this dataset, including species composition and the cover and height of individuals, are sampled twice yearly (spring and fall) at permanent 1m x 1m plots within each site. A third sampling at Site C is performed in the winter. The data from these plots is used to build regressions correlating biomass and volume via weights of select harvested species obtained in SEV999, "Net Primary Productivity (NPP) Weight Data." This biomass data is included in SEV999, "Seasonal Biomass and Seasonal and Annual NPP for Core Grid Research Sites."

openCC0Aug 2021View details →
edi48/100

Monsoon Rainfall Manipulation Experiment (MRME): Soil Carbon Dioxide Concentrations from the Sevilleta National Wildlife Refuge, NM

The Monsoon Rainfall Manipulation Experiment (MRME) is to understand changes in ecosystem structure and function of a semiarid grassland caused by increased precipitation variability, which alters the pulses of soil moisture that drive primary productivity, community composition, and ecosystem functioning. The overarching hypothesis being tested is that changes in event size and variability will alter grassland productivity, ecosystem processes, and plant community dynamics. These soil carbon dioxide data were collected at three depths.

openCC (other)May 2023View details →
edi48/100

Monsoon Rainfall Manipulation Experiment (MRME): Soil Temperature Data from the Sevilleta National Wildlife Refuge, NM

The Monsoon Rainfall Manipulation Experiment (MRME) is to understand changes in ecosystem structure and function of a semiarid grassland caused by increased precipitation variability, which alters the pulses of soil moisture that drive primary productivity, community composition, and ecosystem functioning. The overarching hypothesis being tested is that changes in event size and variability will alter grassland productivity, ecosystem processes, and plant community dynamics. These data are soil temperature data collected at two depths.

openCC (other)Jun 2023View details →
edi48/100

Monsoon Rainfall Manipulation Experiment (MRME) Soil Temperature, Moisture and Carbon Dioxide Data from the Sevilleta National Wildlife Refuge, New Mexico

The Monsoon Rainfall Manipulation Experiment (MRME) is designed to understand changes in ecosystem structure and function of a semiarid grassland caused by increased precipitation variability, by altering rainfall pulses, and thus soil moisture, that drive primary productivity, community composition, and ecosystem functioning. The overarching hypothesis being tested is that changes in event size and frequency will alter grassland productivity, ecosystem processes, and plant community dynamics. Treatments include (1) a monthly addition of 20 mm of rain in addition to ambient, and a weekly addition of 5 mm of rain in addition to ambient during the months of July, August and September. It is predicted that changes in event size and variability will alter grassland productivity, ecosystem processes, and plant community dynamics. In particular, we predict that many small events will increase soil CO2 effluxes by stimulating microbial processes but not plant growth, whereas a small number of large events will increase aboveground NPP and soil respiration by providing sufficient deep soil moisture to sustain plant growth for longer periods of time during the summer monsoon.

openCC (other)Jun 2023View details →

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Allen Brain Atlas

Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.

allen-brain-atlas
neuroscienceopenDocumentation, web resources, and API references are available online.
Last verified 2026-04-30Open record

Annotated Behaviour and Observability Dataset (ABODe)

ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.

abode-home-cage
behavioral-neuroscienceopenThe DataShare record exposes download links for annotations, documentation, license text, and the zipped per-snippet data directory.
Last verified 2026-04-30Open record

DANDI Archive for NWB datasets

DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.

dandi-nwb
electrophysiologyopenPublished Dandiset metadata and archive endpoints are available through the production DANDI API.
Last verified 2026-04-30Open record

International Brain Laboratory public data

The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.

ibl
behavioral-neuroscienceopenPublic sessions can be searched and loaded from the IBL public data server through ONE.
Last verified 2026-04-29Open record

OpenNeuro

OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.

openneuro
neuroscienceopenPublished datasets are available on demand over the internet.
Last verified 2026-04-29Open record