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401
datasets available to search
ShareScore release 0.9.0
Dataset results
401 results for “nuclear genes”
Unexpected nuclear hormone receptor and chromatin dynamics regulate estrous cycle dependent gene expression
GEO Series GSE234065. Mus musculus. 32 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other; Expression profiling by high throughput sequencing.
Effect of mitochondria on nuclear gene expression in Drosophila melanogaster
GEO Series GSE24729. Drosophila melanogaster. 40 samples. Type: Expression profiling by array.
Recruitment to the nuclear periphery enhances repression of H3K9me2-marked genes and transposons to shape cell fate [RNAseq_epilc]
GEO Series GSE264599. Mus musculus. 40 samples. Type: Expression profiling by high throughput sequencing.
Nuclear RNAi Contributes to the Silencing of Off-target Genes and Repetitive Sequences in Caenorhabditis elegans
GEO Series GSE92307. Caenorhabditis elegans. 2 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Interphase-arrested Drosophila embryos activate zygotic gene expression and initiate Mid-Blastula Transition events at a low nuclear-cytoplasmic ratio
GEO Series GSE154502. Drosophila melanogaster. 19 samples. Type: Expression profiling by high throughput sequencing.
ZNF143 is a transcriptional regulator of nuclear-encoded mitochondrial genes that acts independently of looping and CTCF
GEO Series GSE271837. Homo sapiens. 14 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Regulation of ribosomal gene expression and senescence by a PML-mTOR-RONIN nuclear complex in triple-negative breast cancer [RNA-seq_shPML]
GEO Series GSE283106. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
Targeted capture of hundreds of nuclear genes unravels phylogenetic relationships of the diverse Neotropical palm tribe Geonomateae.
<p>The tribe Geonomateae is a widely distributed group of 103 species of Neotropical palms which contains six ecologically important understory or subcanopy genera. Although it has been the focus of many studies, our understanding of the evolutionary history of this group, and in particular of the taxonomically complex genus <em>Geonoma</em>, is far from complete due to a lack of molecular data. Specifically, the previous Sanger sequencing-based studies used a few informative characters and partial sampling. To overcome these limitations, we used a recently developed Arecaceae-specific target capture bait set to undertake a phylogenomic analysis of the tribe Geonomateae. We sequenced 3,988 genes for 85% of the species of the tribe, including 84% of the species of the largest genus, <em>Geonoma</em>.<em> </em>Phylogenetic relationships were inferred using both concatenation and coalescent methods. Overall, our phylogenetic tree is highly supported and congruent with taxonomic delimitations although several morphological taxa were revealed to be non-monophyletic. It is the first time that such a large genomic dataset is provided for an entire tribe within the Arecaceae. Our study lays the groundwork not only for detailed macro- and micro-evolutionary studies within the group, but also sets a workflow for understanding other species complexes across the tree of life.</p>
The Bayesian trees of the nuclear gene DMC1 and the chloroplast gene rps16 sequences
<p>Some plants with low fertility are morphologically intermediate between <i>Roegneria stricta</i><i> </i>and<i> Roegneria</i> <i>turczaninovii</i>, and were suspected to be natural hybrids between these species. In this study, karyotype analysis showed that natural hybrids and its putative parents were tetraploids (2n = 4x = 28). Meiotic pairing in natural hybrids is more irregular than its putative parents. Results of genomic <i>in situ</i> hybridization and fluorescence <i>in situ</i> hybridization indicate that natural hybrids contain the same genome as its putative parents. The nuclear gene DNA meiotic recombinase 1 (<i>DMC</i>1) and the chloroplast gene <i>rps</i>16 of natural hybrids and its putative parents were analyzed for evidence of hybridization. The results from molecular data supported by morphology and cytology demonstrated that the plants represent natural hybrids between <i>R. stricta</i><i> </i>and<i> R.</i> <i>turczaninovii</i>. The study is important understanding species evolution in the genus since it demonstrates for the first time the existence of populations of natural homoploid hybrids in <i>Roegneria. </i>The study also reports for the first time that the composition of the genomic formula of <i>R.</i> <i>turczaninovii </i>is <b>StY</b>, confirming that the current taxonomic status is correct.</p> <p> </p>
Regulation of ribosomal gene expression and senescence by a PML-mTOR-RONIN nuclear complex in triple-negative breast cancer
GEO Series GSE283109. Homo sapiens. 12 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Orphan nuclear receptor TR4 uses non-equivalent binding sites to regulate gene targets from proximal and distal transcriptional regulatory elements during human definitive erythropoiesis [ChIP-seq]
GEO Series GSE54759. Homo sapiens. 6 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Microbiota regulate intestinal epithelial gene expression by suppressing the transcription factor Hepatocyte nuclear factor 4 alpha (Mouse ChIP-seq, RNA-seq, and DNase-seq)
GEO Series GSE90461. Mus musculus. 35 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
Searching for human genes whose expression is controlled by nuclear paraspeckle
GEO Series GSE45158. Homo sapiens. 6 samples. Type: Expression profiling by array.
Recruitment to the nuclear periphery enhances repression of H3K9me2-marked genes and transposons to shape cell fate [RNAseq_shLBR]
GEO Series GSE264602. Mus musculus. 43 samples. Type: Expression profiling by high throughput sequencing.
Gene expression signatures in uteri from nuclear and membrane effects of Estradiol on Estrogen receptor ERα
GEO Series GSE53237. Mus musculus. 31 samples. Type: Expression profiling by array.
Unexpected nuclear hormone receptor and chromatin dynamics regulate estrous cycle dependent gene expression [Hi-C]
GEO Series GSE234061. Mus musculus. 2 samples. Type: Other.
Pioglitazone induces extensive PPARg-dependent hepatic expression of nuclear-mitochondrial genes
GEO Series GSE137820. Mus musculus. 80 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Nuclear Myosin I regulates genome stability by controlling p21 gene activation through a chromatin-based mechanism
GEO Series GSE133506. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
The Bayesian trees of the nuclear gene DMC1 and the chloroplast gene rps16 sequences
Open the record for dataset details and reuse information.
Profiling subcellular localization of nuclear-encoded mitochondrial gene products in zebrafish
GEO Series GSE167587. Danio rerio. 12 samples. Type: Expression profiling by high throughput sequencing.
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Allen Brain Atlas
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.