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485
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ShareScore release 0.9.0
Dataset results
485 results for “pathway analysis”
Identification of potential key genes and pathways associated with the Pashmina fiber initiation using RNA-Seq and integrated bioinformatics analysis
GEO Series GSE164100. Capra hircus. 19 samples. Type: Expression profiling by high throughput sequencing.
Molecular pathway analysis towards understanding tissue vulnerability in spinocerebellar ataxia type 1
GEO Series GSE122099. Mus musculus. 48 samples. Type: Expression profiling by high throughput sequencing.
Data from: Differential Expression Analysis for Pathways
Life science technologies generate a deluge of data that hold the keys to unlocking the secrets of important biological functions and disease mechanisms. We present DEAP, Differential Expression Analysis for Pathways, which capitalizes on information about biological pathways to identify important regulatory patterns from differential expression data. DEAP makes significant improvements over existing approaches by including information about pathway structure and discovering the most differentially expressed portion of the pathway. On simulated data, DEAP significantly outperformed traditional methods: with high differential expression, DEAP increased power by two orders of magnitude; with very low differential expression, DEAP doubled the power. DEAP performance was illustrated on two different gene and protein expression studies. DEAP discovered fourteen important pathways related to chronic obstructive pulmonary disease and interferon treatment that existing approaches omitted. On the interferon study, DEAP guided focus towards a four protein path within the 26 protein Notch signalling pathway.
Metabolic Pathway Analysis in Intensive Care Unit Patients With Refeeding Syndrome
ClinicalTrials.gov study NCT06344546. IPD Sharing: UNDECIDED. Countries: 3. Publications: 0.
Gene Expression Profiling and Bioinformatic Analysis Identifying Genes and Biochemical Pathways in Type 2 Diabetes
ClinicalTrials.gov study NCT00143013. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Signal TrAnsduction Pathway Activity Analysis in OVarian cancER
ClinicalTrials.gov study NCT03458221. IPD Sharing: UNDECIDED. Countries: 1. Publications: 0.
Analysis of Transposon Control Pathways in Germinal Cancers of the Testicle
ClinicalTrials.gov study NCT02873793. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Retrospective Analysis of Systemic Glucocorticoid Mediated Long-term Effects, Patient Pathways and Economic Burden Across Multiple Indications
ClinicalTrials.gov study NCT06488703. IPD Sharing: YES. Countries: 1. Publications: 0.
Analysis of the Immunobiology of Acute Myeloid Leukemia Relapses After Allogeneic Hematopoietic Stem Cell Transplant (HSCT) for the Generation of Guidelines and Personalized Therapeutic Pathways
ClinicalTrials.gov study NCT05124288. IPD Sharing: UNDECIDED. Countries: 1. Publications: 0.
The Metabolome Profiling and Pathway Analysis of ADHD
ClinicalTrials.gov study NCT02942225. IPD Sharing: NO. Countries: 1. Publications: 0.
CT Analysis of the Anatomy of the Nasotracheal Intubation Pathway of Patients With Indication of Maxillary Advancement
ClinicalTrials.gov study NCT03570528. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Transcriptome analysis of potential candidate genes and molecular pathways in colitis-associated colorectal cancer of Mkp-1-deficient mice
GEO Series GSE164960. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing.
Transcriptome and metabolome analysis reveals anthocyanin biosynthesis pathway associated with poplar (Populus deltoids) leaf color formation
GEO Series GSE216754. Populus deltoides. 12 samples. Type: Expression profiling by high throughput sequencing.
miRNA/mRNA analysis of Chlamydial trachomatis-infected endometrial biopsies indicate increased TGF-β pathways drive epithelial-mesenchymal transition and regulatory T cell differentiation
GEO Series GSE289941. Homo sapiens. 23 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Identification of candidate genes and pathways in dexmedetomidine-induced cardioprotection in the rat heart by bioinformatics analysis [miRNA]
GEO Series GSE126105. Rattus norvegicus. 10 samples. Type: Non-coding RNA profiling by array.
Transcriptomic and phenotypic analysis reveals new functions for the Tat pathway in Yersinia pseudotuberculosis [dtatC-vs-ip_26C-log]
GEO Series GSE80528. Yersinia pseudotuberculosis IP 32953; Yersinia pseudotuberculosis. 4 samples. Type: Expression profiling by array.
Transcriptome analysis reveals an activation of MHC-I and MHC-II pathways in chicken trachea immunized with infectious laryngotracheitis virus vaccine
GEO Series GSE46046. Gallus gallus. 3 samples. Type: Expression profiling by high throughput sequencing.
Methamphetamine increases the proportion of SIV-infected microglia/macrophages, alters metabolic pathways, and elevates cell death pathways: a single-cell analysis
GEO Series GSE160384. Macaca mulatta. 4 samples. Type: Expression profiling by high throughput sequencing.
Single-cell analysis defines heterogenous differentiation pathways of human innate T cells
GEO Series GSE254975. Homo sapiens. 8 samples. Type: Expression profiling by high throughput sequencing; Other.
Novel Atherogenic Pathways from the Differential Transcriptiome Analysis of Diabetic Epicardial Adipose Tissue
GEO Series GSE108971. Homo sapiens. 16 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.