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Fig. 2. 3D in 3D X-ray microscopy (Micro-CT) and SEM reveal Zospeum troglobalcanicum Absolon, 1916 and allied species from the Western Balkans (Ellobioidea: Carychiidae)
Fig. 2. 3D visualizations of Micro-CT data of the lectotype of Zospeum troglobalcanicum Absolon, 1916 (NHMW Moll.Coll.Edlauer 32.749) with shell parts and terms indicated. A. Measurements include shell height (sh), shell width (sw), aperture height (ah), aperture width (aw), height of last whorl (hlw) and spire angle (SA). B. Internal view showing columella (co), lamella (la), peristome (pe) and penultimate whorl (pw). C. Apical view showing protoconch (pr), teleoconch (te) and peristome (pe). D. Ventral view showing peristome configuration (pe) parietal shield (ps) and umbilicus (um).
Fig. 4. 3D in 3D X-ray microscopy (Micro-CT) and SEM reveal Zospeum troglobalcanicum Absolon, 1916 and allied species from the Western Balkans (Ellobioidea: Carychiidae)
Fig. 4. 3D visualizations using Micro-CT data of shells from the caves Benetina pećina (SE Bosnia and Herzegovina) and Cetinska pećina (Montenegro). A–F. Zospeum troglobalcanicum Absolon, 1916, lectotype (NHMW Moll.Coll.Edlauer 32.749). A. Aperture view. B. Aperture facing right view. C. Apical view. D. Dorsal view. E. Aperture facing left view. F. Ventral view showing umbilical depression. G–L. Zospeum tortuosum Jochum & Ruthensteiner sp. nov., holotype (MCSMNH-PMSLMoll.-FVelkovrh 34099[spm1]). G. Aperture view. H. Aperture facing right view. I. Apical view. J. Dorsal view. K. Aperture facing left view. L. Ventral view showing callused peristome positioned mostly on top of umbilicus.
Fig. 15 in 3D X-ray microscopy (Micro-CT) and SEM reveal Zospeum troglobalcanicum Absolon, 1916 and allied species from the Western Balkans (Ellobioidea: Carychiidae)
Fig. 15. Zospeum biokovoense Jochum & Ruthensteiner sp. nov. (NHMW Mol.Coll.Edlauer 16.390). A–B. Light microscopic images showing aperture and dorsal views and collection labels. A. Juvenile shell. B. Holotype. C–H. 3D visualizations of Micro-CT data of holotype. C. Aperture view showing gnarled deformation of the columella. D. Aperture facing right view showing fat columella and lamella. E. Apical view. F. Dorsal view showing lopsided spire and incomplete lamella on top of fat columella. G. Aperture facing left view. H. Ventral view showing puckered umbilical depression.
Fig. 5. 3D in 3D X-ray microscopy (Micro-CT) and SEM reveal Zospeum troglobalcanicum Absolon, 1916 and allied species from the Western Balkans (Ellobioidea: Carychiidae)
Fig. 5. 3D visualizations of Micro-CT data of the deformed shell, (MCSMNH-PMSL-Moll.-FVelkovrh 34099[spm4]) from Cetinska pećina. A. Aperture view. B. Aperture facing right view. C. Apical view. D. Dorsal view. E. Aperture facing left view. F. Ventral view with umbilicus covered by last quarter of shell whorl.
Fig. 1 in 3D X-ray microscopy (Micro-CT) and SEM reveal Zospeum troglobalcanicum Absolon, 1916 and allied species from the Western Balkans (Ellobioidea: Carychiidae)
Fig. 1. Map showing Western Balkan cave localities of populations of Zospeum Bourguignat, 1856. Cave localities are indicated in red.
Fig. 3 in 3D X-ray microscopy (Micro-CT) and SEM reveal Zospeum troglobalcanicum Absolon, 1916 and allied species from the Western Balkans (Ellobioidea: Carychiidae)
Fig. 3. Light microscopic images of shells from the caves Benetina pećina (SE Bosnia and Herzegovina) and Cetinska pećina (Montenegro) with specimen labels. A. Zospeum troglobalcanicum Absolon, 1916, lectotype (NHMW Moll.Coll.Edlauer 32.749) from Benetina pećina. B–C. Zospeum tortuosum Jochum & Ruthensteiner sp. nov., paratypes (MCSMNH-PMSL-Moll.-FVelkovrh 34099[spm2-3]) from Cetinska pećina. D. Zospeum tortuosum Jochum & Ruthensteiner sp. nov., holotype (MCSMNHPMSL-Moll.-FVelkovrh 34099[spm1]) from Cetinska pećina. E. Deformed shell (MCSMNH-PMSLMoll.-FVelkovrh 34099[spm4]) from Cetinska pećina.
Fig. 14. 3D in 3D X-ray microscopy (Micro-CT) and SEM reveal Zospeum troglobalcanicum Absolon, 1916 and allied species from the Western Balkans (Ellobioidea: Carychiidae)
Fig. 14. 3D visualizations of Micro-CT data of Zospeum constrictum Jochum & Ruthensteiner sp. nov. (NHMW Mol.Coll.Edlauer 16.693). A–F. Holotype. A. Aperture and dorsal views. B. Aperture facing right view. C. Apical view showing upper right side of final whorl tucked underneath spire. D. Dorsal view. E. Aperture facing left view. F. Ventral view. G–L. Paratype (Fig. 13B). G. Aperture view. H. Aperture facing right view. I. Apical view showing upper right side of final whorl tucked underneath spire. J. Dorsal view. K. Aperture facing left view. L. Ventral view.
Fig. 20. 3D in 3D X-ray microscopy (Micro-CT) and SEM reveal Zospeum troglobalcanicum Absolon, 1916 and allied species from the Western Balkans (Ellobioidea: Carychiidae)
Fig. 20. 3D visualizations of Micro-CT data of Zospeum sp. 2, Taleža pećina, bei Trebinje, BiH, presented as Z. troglobalcanicum in Inäbnit et al. 2021 (NMBE 553414/1 (ex RSC 1981). A. Aperture view showing low, ridge-like fold on inner penultimate whorl. B. Aperture facing right view showing smooth columella. C. Apical view. D. Dorsal view. E. Aperture facing right view. F. Ventral view showing peristome edge directly parallel to umbilical depression.
Fig. 8. 3D in 3D X-ray microscopy (Micro-CT) and SEM reveal Zospeum troglobalcanicum Absolon, 1916 and allied species from the Western Balkans (Ellobioidea: Carychiidae)
Fig. 8. 3D visualizations of Micro-CT data of shells from the caves Lipska pećina and Duboki do (Montenegro). A–F. Zospeum troglobalcanicum Absolon, 1916 (MCSMNH-PMSL-Moll.-FVelkovrh 29603) (Fig. 7A). A. Aperture view. B. Aperture facing right view. C. Apical view. D. Dorsal view. E. Aperture facing left view. F. Ventral view showing reduced umbilical depression. G–L. Zospeum dubokidoense Jochum & Ruthensteiner sp. nov., holotype (MCSMNH-PMSL-Moll.-FVelkovrh 30360[spm1]). G. Aperture view. H. Aperture facing right view. I. Apical view. J. Dorsal view. K. Aperture facing left view. L. Ventral view showing no umbilical depression.
THE NATURE OF X-RAYS FROM YOUNG STELLAR OBJECTS IN THE ORION NEBULA CLUSTER - A Chandra HETGS Legacy Project
<p><span>This first release provides the community with a first cut of confusion cleaned X-ray spectra of the Orion Nebula Cluster observed with the HETG onboard the Chandra X-ray Observatory. The data were taken starting in 1999 until 2021. <br><br>The confusion cleaning is based on several aspects of sources for confusion, which includes cluster point sources intersecting with grating dispersions, grating arms intersecting each other in CCD space, as well as grating dispersion overlaps prohibiting proper order sorting. The latter is a major effect and resulted in sometimes severe data losses. In the first release, our automated procedure took care of the vast majority of point sources and grating arm intersections. With respect to the dispersion arm overlaps, in this release we took a statistical approach optimizing the agreement of all four grating dispersion arms in the merged data to agree within a 1 sigma statistical uncertainty over 90% of the bandpass between 2 and 15 Angstrom. For that we used the zero order flux fractions of the interfering sources as the driving parameter. <br><br>There are still many caveats and rooms for improvement, which we will address in upcoming releases, which include the treatment of the increasing background at high dispersion, improve extraction efficiency, exclude observations with non-detections before confusion cleaning, include possible new detections, investigate the 5 A excess we observe in the HEG, though at low statistics, spotcheck individual observations for any residual issues. <br><br>Release 1 provides the community with an excellent starting point for addressing our identified science projects. Out of the 46 sources that were extracted, 37 resulted in valid spectral data. 7 sources have less than 1000 counts in 1st order, some of those may not yet be very useful. <br></span></p> <p> </p> <p>Each directory contains the merged cleaned spectrum and responses for<br>one source. The file "pha2" is a Type II PHA file (multiple spectra)<br>containing the four first order spectra, HEG -1, HEG +1, MEG -1, and<br>MEG +1. Headers have been edited indicate the object (OBJECT), and<br>start and stop times for the set of observations. Since the exposure<br>depends on order, due to the cleaning process, EXPOSURE is a column in<br>the data table. Some other keywords now say "MERGED" since they can<br>vary with observation.</p> <p>There is one effective area file per order (".arf" files). These have<br>also been merged by zeroing out the same regions as excluded in the<br>count spectra, and summed weighting by exposure. They also have<br>similar header edits as for the spectra.</p> <p>While the exposures in headers may say 2 Ms, the actual exposure at<br>any wavelength may be much less. This is not explicitly known, but is<br>implicit in the ignored wavelength regions in the merged counts and<br>responses.</p> <p>There is one grating response matrix (".rmf" files) per order. Since<br>all spectral extractions of all sources used the same cross-dispersion<br>region, there is no change in these files between sources. One set<br>suffices for all extractions. These are in the directory "RMFs", and<br>also for convenience have symbolic links in each source directory.</p> <p>HETG background files have also been provided, one PHA file per first<br>order, in directory HETG_Background. These have been derived from<br>long observations of blank fields. Details are provided in the<br>accompanying memo, hetg_background.pdf.</p> <p>Headers have not been designed for auto-loading of responses (that is<br>CORRFILE, RESPFILE, and BACKFILE are set to 'none').</p>
Supplementary AIA Movies for the Solar Flares described in "Investigating the Soft X-ray Spectra of Solar Flare Onsets"
<p>This repository contains flare movies of six solar flares described in the paper "Investigating the Soft X-ray Spectra of Solar Flare Onsets".</p> <p>For each flare both the standard AIA 193 Angstrom Solar Dynamics Observatory (SDO) Atmospheric Imager (AIA) Assembly Extreme Ultra-Violet (EUV) image animations, as well as the running difference animations are included. The format of the file names for the AIA 193 Angstrom images is ‘DOY_NNN_Col.mp4’, where NNN is denotes the Day of Year (for e.g., DOY_065_Col.mp4) and the suffix ‘Col’ denotes ‘Colored’. Similarly the format of the file names for the difference images is ‘DOY_NNN_Diff.mp4’ where the suffix ‘Diff’ denotes ‘Difference Image’. The timestamp of each image in the animations is also shown on the top of the image.</p> <p>The SDO-AIA images are courtesy of NASA/SDO and the AIA and HMI science teams, and have been accessed from <a href="http://jsoc.stanford.edu/">http://jsoc.stanford.edu/</a>.</p>
Figure 2. A in X-ray microtomography of the late Carboniferous whip scorpions (Arachnida, Thelyphonida) Geralinura britannica and Proschizomus petrunkevitchi
Figure 2. A, reconstruction of the holotype of Proschizomus petrunkevitchi (NHMUK PI In 7912) in dorsal aspect. B, photograph of the P. petrunkevitchi holotype, part. C, photograph of the P. petrunkevitchi holotype, counterpart. D, left pedipalp of P. petrunkevitchi. E, P. petrunkevitchi in frontal view. Translucent elements are inferred through symmetry or comparison with extant taxa. Abbreviations: 1–4, legs 1–4; Ap, apophysis; Fe, femur; Pa, patella; Pp, pedipalps; Ta, tarsus; Ti, tibia; Tr, trochanter. Scale bars: A–C = 5 mm; D = 1 mm; E = 2 mm.
Figure 1. A in X-ray microtomography of the late Carboniferous whip scorpions (Arachnida, Thelyphonida) Geralinura britannica and Proschizomus petrunkevitchi
Figure 1. A, reconstruction of a paratype of Geralinura brittanica (NHMUK PI In 31265) in dorsal view. B, expanded view of the dorsal anterior of G. brittanica with the median eyes outlined. C, photograph of G. brittanica paratype, part. D, photograph of G. brittanica paratype, counterpart. E, right chelicera of G. brittanica. F, left pedipalp of G. brittanica. G, G. brittanica in frontal view. Abbreviations: 1–4, legs 1–4; Ap, apophysis; Fe, femur; Fl, flange; LK, lateral keel; ME, median eyes; Pa, patella; Pp, pedipalps; Ta, tarsus; Ti, tibia; Tr, trochanter. Scale bars: A–D = 5 mm; E, F = 1 mm; G = 2 mm.
X-ray scattering tensor-tomography dataset for a steel wire using the austenitic {220}-peak.
<p>Experimental data from a scanning-probe wide angle scattering experiment performed at the cSAXS beamline at teh Swiss Light Source at the Paul Scherrer Institure in Villigen, Switzerland.</p> <p>The file-format is that used in by the software package mumott (mumott.org).</p> <p>The sample is a tangled knot of hard-tempered steel. The detector images have been azimuthally re-grouped and only the intensity of the austeinte {220} peak is included in 48 separrate azimuthal bins.</p>
Fiducial X-ray--driven photoevaporation model from PLUTO+PRIZMO
<p>The file contains the scripts needed to run PLUTO+PRIZMO for the fiducial model described in Sellek et al. (2024b), as well as the final output from the simulation in the output_template folder.</p> <p>For guidance on use please contact sellek@strw.leidenuniv.nl</p>
[NGC3079 / UGC5101] SAUNAS: I. Searching for low surface brightness X-ray emission with Chandra/ACIS
<p>The contained FITS files represent the processed Chandra/ACIS X-ray surface brightness maps of the NGC3079 and UGC5101 galaxies, observed with Chandra/ACIS and analyzed with the SAUNAS pipeline as described in Borlaff et al. 2024 (in revision). All the images have the photometric calibrations (in units of photons cm-2 s-1 pixel-1) and have been astrometrically aligned. </p> <div>Each file contains four FITS extensions as detailed below: </div> <div>----</div> <div>EXTENSION NAME TYPE SIZE DETAILS </div> <div>----</div> <div>0 INFO no-data 0 BLANK EXTENSION. <br>1 SB_FLUX float64 512x512 X-RAY SURFACE BRIGHTNESS MAP. [photons cm-2 s-1 pixel-1] <br>2 STD_SB_FLUX float64 512x512 X-RAY SURFACE BRIGHTNESS NOISE MAP [photons cm-2 s-1 pixel-1]<br>3 SNR float64 512x512 SIGNAL-TO-NOISE RATIO [ - ]</div> <div>-----------</div> <div> </div> <div>Use the SNR extension (extension #3) to determine if your source of interest in the SB_FLUX map (extension #1) is statistically significant over the background limit.</div> <div> </div> <div> </div> <div> </div> <div> </div> <div> </div>
Buoy-based detection of low-energy cosmic-ray neutrons (Seelhausener See, July 15 to Dec 02, 2014)
<p>Contains two resources used in Schrön & Rasche et al. (2024):</p> <ol> <li><strong>Raw</strong> measurement data files from the buoy detector. Column names are provided in the header of the files. For detailed information about column names and descriptions, see the readme.</li> <li><strong>Processed</strong> measurement data of the buoy detector. Data has been stored as CSV files, the column names are described in `Buoy.csv.readme`. Additional PDF files show the corresponding plots. Two versions of data are provided: <ol> <li><strong>Buoy-1h</strong> contains data aggregated to 1 hour, and</li> <li><strong>Buoy-1h-mavg25</strong> contains the same data but the neutrons underwent a moving average filter with a window size of 25 (1 day).</li> </ol> </li> </ol> <p>Processing has been performed using Corny v0.8.2 (<a title="Corny" href="https://git.ufz.de/CRNS/cornish_pasdy">git.ufz.de/CRNS/cornish_pasdy</a>) with the configuration file <code>Buoy-1h.cfg</code>.</p>
From Generalist to Specialist: Incorporating Domain-Knowledge into Flamingo for Chest X-Ray Report Generation
<p>This subset of the MIMIC-CXR split file contains the study identifiers and paths to the chest X-ray images used for training, validation and testing of all models presented in the paper: "From Generalist to Specialist: Incorporating Domain-Knowledge into Flamingo for Chest X-Ray Report Generation".</p>
FIGURE 4 in Benefits and limits of x-ray micro-computed tomography for visualization of colonization and bioerosion of shelled organisms
FIGURE 4. Ordovician bryozoan colony. One-half of hemispherical bryozoan, interior of object, bearing probably oldest boring attributable to ichnogenus Entobia Bronn, 1837. Besides semi-radial tunnels and exploratory threads, three bulbous chambers discovered near the center of the hemisphere. Darriwilian (middle Ordovician), Khrevitsa locality, St. Petersburg Region, Russia. Scale bar equals 1 cm.
FIGURE 7 in Benefits and limits of x-ray micro-computed tomography for visualization of colonization and bioerosion of shelled organisms
FIGURE 7. Three-dimensional visualization of a shell of the recent Foraminifera Amphistegina sp. illustrating the potential of micro-CT in investigations of recent marine shelled organisms. (A) A surface view of the whole shell. (B) A transversal section through the whole shell (C, D) Details of the shells´s surface.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.