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281 results for “source code”
Data: Sources, emotional touchpoints, emotions and coding
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CrashRepair - Experiment Artifacts and Source Code
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Source code and data for Ou et al. 2021 (US state-level capacity expansion pathways with improved modeling of the power sector dynamics within a multisector model)
<p>For details, please check the "readme" file.</p>
smFISH Analysis Source code
<p>Source code of smFISH image analysis scripts (MATLAB) ; List of smiFISH probes used in this work.</p>
Source code of projects
<p>This dataset contains the source code of projects for evaluation experiments.</p>
Datasets and R source code of manuscript "Adding insult to injury: anthropogenic noise intensifies predation risk by an invasive freshwater fish species" by Fernandez Declerck et al.
<p>Datasets and R source code of manuscript "Adding insult to injury: anthropogenic noise intensifies predation risk by an invasive freshwater fish species" by Fernandez Declerck et al. (submitted)</p> <p> Project<br> ├── README<br> ├── data_functional_response.txt<br> ├── data_prey_behaviour.txt<br> ├── R_script.R<br> └── BINV-D-22-00447_Playback.wav</p> <p>Main dataset: 'data_functional_response.txt'. Dataset for the functional response of the predator. Fish behaviour was recorded under two noise conditions (either boat noise or ambient noise). The dataset corresponds to data frame "d" in the script. Variables description:<br> - id: identity of the fish<br> - condition: noise condition, either "boat noise" or "ambient noise"<br> - prey_number: number of chironomid larvae introduced in the tank<br> - prey_captured : number of chironomid larvae consumed<br> - fish_mass : fish body mass (g)<br> - swim_distance: swim distance (m)</p> <p>Secondary dataset: 'data_prey_behaviour.txt'. Dataset for control experiment on prey behaviour. Prey behaviour was recorded under two noise conditions (either boat noise or ambient noise). The dataset corresponds to data frame "f" in the script. We used 20 replicates with 10 replicates for ambient noise condition, and 10 replicates for boat noise condition. Two focal prey larva were observed per replicates. Each prey larva was observed during two time periods (corresponding to two noise sequences). Variables description:<br> - condition: noise condition, either "boat noise" or "ambient noise"<br> - replicate: number of the replicate<br> - unique_id: identity of each focal larva<br> - noise_sequence: number of the noise sequence (either second or third)<br> - prop_inactive: proportion of time spent inactive by the focal larva<br> - prop_active: proportion of time spent active by the focal larva</p> <p>R source code 'code R_script.R'. Complete analysis as one single R script. See comments for additional information.</p> <p>The last file `BINV-D-22-00447_Playback.wav` is an audio file (Waveform Audio File Format). It is the soundtrack used in the playback experiments.</p>
Data and code for "Sediment source and concentration influence larval performance of the threatened coral Orbicella faveolata" submitted to PlosOne
<p>This repository contains data and analysis scripts for the manuscript:</p> <p><strong>Sediment source and concentration influence larval performance of the threatened coral Orbicella faveolata</strong></p> <p><strong>Authors</strong>: XM Serrano, S Rosales, MW Miller, A Palacio-Castro, O Williamson, A Gomez and AC Baker</p> <p><strong>Journal: </strong>PlosOne</p> <p>The aim of this study was to investigate the performance of coral larvae from an important Caribbean reef-building coral species listed under the Endangered Species Act (<em>Orbicella faveolata</em>) exposed to sediments collected near a recently dredged Port in southeast Florida (Port Miami) vs. reef sediments collected where their parents originated from (Florida Keys). We tested whether sediments can affect the survival, settlement and respiration of coral larvae, and hypothesized detrimental effects in all of these parameters for sediments collected near the Port, regardless of dosing (low vs. high sediment treatments).</p>
Source code and data files for the acoustic sensor-based wearable fetal movement monitor
<p>This repository contains data files and source code for the acoustic sensor-based wearable fetal movement monitor.</p>
E3SMv2 source codes
<p>This archive contains the E3SMv2 source codes for the manuscript submitted to GMD journal.</p>
Unvalidated R source code
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Code review regression analysis of open source GitHub projects
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A dual histone code specifies the binding of heterochromatin protein Rhino to a subset of piRNA source loci
GEO Series GSE247156. Drosophila erecta; Drosophila ananassae; Drosophila melanogaster; Drosophila simulans; Drosophila yakuba. 163 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing.
A dual histone code specifies the binding of heterochromatin protein Rhino to a subset of piRNA source loci [CUT&RUN chromodomains in S2 cells]
GEO Series GSE247151. Drosophila melanogaster. 35 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other.
Non-coding regions are the main source of tumor-specific antigens [mouse]
GEO Series GSE111092. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing.
Non-coding regions are the main source of tumor-specific antigens
GEO Series GSE113992. Homo sapiens; Mus musculus. 15 samples. Type: Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing.
Mucin Acts as a Nutrient Source and a Signal for the Differential Expression of Genes Coding for Cellular Processes and Virulence Factors in Acinetobacter baumannii
GEO Series GSE100582. Acinetobacter baumannii. 6 samples. Type: Expression profiling by high throughput sequencing.
Smart Contracts Corpus Repository: Source Code and Metrics.
<p>Many empirical software engineering studies show that there is a great need for repositories where code is acquired, filtered and classified.<br> During the last few years, Ethereum block explorer services have emerged as a popular project to explore and search Ethereum blockchain data such as transactions, addresses, tokens, smart-contracts' source code, prices and other activities taking place on Ethereum blockchain.<br> Despite the availability of this kind of services, retrieving specific information useful to empirical software engineering studies, such as the study of smart-contracts' software metrics, might be a tedious task that requires different sub-tasks such as searching specific transactions in a block, parsing files in HTML format and filtering the smart-contracts to remove duplicated code or unused smart-contracts.<br> Smac-Corpus aims to create a smart-contracts' repository where smart contracts data (source code, ABI and byte code) are freely and immediately available and also classified based on software metrics identified in the scientific literature.</p>
Case Studies Source Code + Traces
<p>The zip file contains the source code for the four open source systems that were considered in the empirical evaluation of the paper. </p> <p>4 folders will appear after unzipping the zip file, each folder consists of the source code of each program:</p> <p>Each folder contains a subfolder called "Traces" that contains the trace data of this study. You will find the Traces.json and TracesClasses.json within this "Traces" folder within each project.</p>
FIRE14 Detection of SOurce COde Re-use
<p>This data was used for the PAN shared task on source code re-use detection at FIRE2014. </p> <p>Please find the task description at https://pan.webis.de/fire14/pan14-web/index.html.</p> <p><strong>THIS DATA</strong></p> <p>For the training phase we provide an annotated corpus including with the programming language extensions. It includes information about whether a text fragment has been re-used and, if it is the case, what its source is.</p> <ul> <li>The collection consists of source codes written in Java and C.</li> <li>Re-use is commited in both programming languages but ONLY at monolingual level.</li> <li>The Java collection contains 259 source codes from 000.java to 258.java.</li> <li>The C collection contains 79 source codes from 000.c to 078.c.</li> <li>Relevance Judgements represent re-use in both directions(a→b and b→a)</li> </ul> <p>In the test phase the only annotation that will be provided in the corpus is the programming language extensions.</p> <ul> <li>It is divided by programming language (C/C++ and JAVA) so you do not need any pre-process to identify the programming language of the source codes.</li> <li>Each programming language folder contains 6 folders (A1, B1, B2, C1 and C2) that contains a specific scenario with monolingual re-use.</li> <li>There is not re-use between scenarios so you just need to look for re-used cases among the source code files inside each folder.</li> <li>The name of the files consists of the name of the task which they belong plus an identifier. For example, file "B10021" belongs to scenario B1 and its identifier number is 0021.</li> <li>It could not exist re-use between source codes that belong to different scenarios. For example, you do not have to submit a re-used case between files "B10021" and "B20013". The first one belongs to scenario B1 but the second one belongs to B2.</li> </ul>
Source codes and datasets for arXiv:2302.06930
<p>Source codes and datasets used to obtain all the results in ``All-microwave manipulation of superconducting qubits with a fixed-frequency transmon coupler" (arXiv:2302.06930).</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.