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3,576 results for “strain”
Effects of yeast strain and juice nitrogen status on glutathione utilisation during fermentation of model media
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Bridging length scales in organic mixed ionic-electronic conductors through internal strain and mesoscale dynamics
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Data from: Costs of antibiotic resistance genes depend on host strain and environment and can influence community composition
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Strain localization in sandstone-derived fault gouges under conditions relevant to earthquake nucleation
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A select-and-resequence approach reveals strain-specific effects of Medicago nodule-specific PLAT-domain genes
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Data from: Caloric restriction-mediated reproductive lifespan extension across multiple strains of the clonal aquatic plant <em>Lemna turionifera</em>
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Strain gauge platforms: Time-lapse microscopy dataset of engineered cardiac microbundles
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Inferring strain-level mutational drivers of phage-bacteria interaction phenotypes arising during coevolutionary dynamics
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Genome sequence and characterization of a freshwater photoarsenotroph, Cereibacter azotoformans strain ORIO, isolated from sediments capable of cyclic light-dark arsenic oxidation and reduction
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Genome–scale approach to study the genetic relatedness among Brucella melitensis strains - wgMLST schema for Brucella melitensis
<p><strong>wgMLST schema for <em>Brucella melitensis</em></strong></p> <p> </p> <p><strong>Schema creation</strong></p> <p>The wgMLST schema was created using the 60 complete genomes of <em>Brucella melitensis </em>available at <a href="https://enterobase.warwick.ac.uk/species/index/ecoli">NCBI</a>, as of January 2019, with the chewBBACA v2.0.11 suite (<a href="https://github.com/B-UMMI/chewBBACA">https://github.com/B-UMMI/chewBBACA</a>), using a training file generated by Prodigal v2.6.3 from the <em>B. melitensis</em> 16M reference genome (RefSeq Accession NC_003317 and NC_003318). For curation and validation, the wgMLST schema was further populated with 212 additional draft genomes: 157 draft genomes (downloaded from NCBI in January 2019) and 55 draft genomes assembled with<a href="https://github.com/B-UMMI/INNUca"> INNUca v3.1</a> (PRJEB30030).</p> <p>File 'Bmelitensis_wgMLST_2656_schema.tar.gz' contains the wgMLST schema formatted for chewBBACA and includes a total of 2656 loci.</p>
Data from: Phylogenomic analysis of Wolbachia strains reveals patterns of genome evolution and recombination
<p><i>Wolbachia</i> are widespread intracellular bacteria that mediate many important biological processes in arthropod species. In this study, we identified 210 conserved single-copy genes in 33 genome-sequenced <i>Wolbachia</i> strains in the A, B, C, D, E and F supergroups. Phylogenomic analysis with these core genes indicate that all 33 <i>Wolbachia</i> strains maintain the supergroup relationship classified previously based on the multilocus sequence typing (MLST) genes. Using an interclade recombination screening method, 14 inter-supergroup recombination events were discovered in six genes (2.9%) among 210 single copy orthologs. This finding suggests a relatively low frequency of intergroup recombination. Interestingly, they have occurred not only between A and B supergroups (9 events), but also between A and E supergroups (5 events). Maintenance of such transfers suggests possible roles in <i>Wolbachia</i> infection related functions. Comparisons of strain divergence using the five genes of the MLST system show a high correlation (Pearson correlation coefficient r = 0.98) between MLST and whole genome divergences, indicating that MLST is a reliable method for identifying related strains when whole genome data are not available. The phylogenomic analysis and the identified core gene set in our study will serve as a valuable foundation for strain identification and the investigation of recombination and genome evolution in <i>Wolbachia</i>.</p>
Effect of Strain Amplitude on Static and Dynamic Mechanical Properties of Tight Sedimentary Rocks: An Experimental Study
<p>We perform increasing-amplitude triaxial unload cycling tests on three tight sedimentary rocks to investigate the strain-dependent mechanical properties. </p>
Data for 'Ultrafast strain engineering and coherent structural dynamics from resonantly driven optical phonons in LaAlO3'
<p>This folder contains all the raw data required to generate the figures in the work 'Ultrafast strain engineering and coherent structural dynamics from resonantly driven optical phonons in LaAlO3'. </p> <p> </p> <p><strong>Contents</strong></p> <p><em>Figure 2:</em></p> <p>(a) Time resolved balanced reflection data for the short and long time periods: LongTimeData.txt and ShortTimeData.txt. The corresponding Fourier spectra shown in the inset: InsetFourier_LongTimeData.txt and InsetFourier_ShortTimeData.txt</p> <p>(b) Time resolved polarization rotation data for the short and long time periods: LongTimeData.txt and ShortTimeData.txt. The corresponding Fourier spectra shown in the inset: InsetFourier_LongTimeData.txt and InsetFourier_ShortTimeData.txt</p> <p><em>Figure 3:</em></p> <p>(a) Time-resolved polarization rotation data after excitation at two different pump photon energies: trace_85meV_excitation.txt and trace_124meV_excitation.txt. Amplitude as function of central pump photon energy: Inset_Wavelength_dependence.txt and the absorption of LaAlO3: Inset_absorption.txt</p> <p>(b) The raw data for different polarizations: traces_angle_dependence.txt</p> <p>(c) The experimentally obtained (AmplitudeExperiment.txt) and DFT calculated values (AmplitudeDFT.txt).</p> <p><em>Figure 4</em></p> <p>(a) Fourier spectra (and double Gaussian fit) corresponding to time-resolved measurments after excitation at different central photon energies: FourierSpectraData.txt (and FourierSpectraFits). Inset: Extracted peak amplitude (Inset_StrainvsWavelength.txt) and Gaussian fit of the TA strain (Inset_GaussianFit.txt). </p> <p>(b)The TA/LA ratio as function of pump photon energy (SoundWaveRatio.txt) and the Lorentzian fit (RatioFit.txt). And the absorption of LaAlO3 (Absorption_coefficient.txt).</p> <p> </p> <p> </p> <p> </p> <p> </p>
Strain fields in twisted bilayer graphene: Dataset 10 of 19
<p>See supplemental materials of Kazmierczak & Van Winkle et al for more information.</p> <p>20200616_13.h5 : dataset s2-13 corresponding to mean angle of 0.16</p>
Strain fields in twisted bilayer graphene: Dataset 11 of 19
<p>See supplemental materials of Kazmierczak & Van Winkle et al for more information.</p> <p>20200616_3.h5 : dataset s2-3 corresponding to mean angle of 1.1669</p>
Strain fields in twisted bilayer graphene: Dataset 6 of 19
<p>See supplemental materials of Kazmierczak & Van Winkle et al for more information.</p> <p>20200616_2.h5 : dataset s2-2 corresponding to mean angle of 0.317</p>
Strain fields in twisted bilayer graphene: Dataset 4 of 19
<p>See supplemental materials of Kazmierczak & Van Winkle et al for more information.</p> <p>02262020_15.h5 : dataset s1-15 corresponding to mean angle of 0.1203</p> <p>20200616_8.h5 : dataset s2-8 corresponding to mean angle of 0.663</p> <p>20200616_9.h5 : dataset s2-9 corresponding to mean angle of 0.6632</p>
Strain fields in twisted bilayer graphene: Dataset 12 of 19
<p>See supplemental materials of Kazmierczak & Van Winkle et al for more information.</p> <p>20200616_4.h5 : dataset s2-4 corresponding to mean angle of 1.1897</p>
Strain fields in twisted bilayer graphene: Dataset 16 of 19
<p>See supplemental materials of Kazmierczak & Van Winkle et al for more information.</p> <p>20200616_19.h5 : dataset s2-19 corresponding to mean angle of 0.16</p> <p>20200616_20.h5 : dataset s2-20 corresponding to mean angle of 0.16</p> <p>20200616_21.h5 : dataset s2-21 corresponding to mean angle of 0.16</p>
Strain fields in twisted bilayer graphene: Dataset 17 of 19
<p>See supplemental materials of Kazmierczak & Van Winkle et al for more information.</p> <p>20200616_1.h5 : dataset s2-1 corresponding to mean angle of 0.2894</p> <p>20200616_23.h5 : dataset s2-23 corresponding to mean angle of 1.3067</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.