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4,059 results for “mammal”
Data from: A new echimyid genus (Rodentia, Caviomorpha) in Central Argentina: uncovered diversity of a Brazilian group of mammals in the Pleistocene
We describe a new extinct spiny rat, Proclinodontomys dondasi n. gen. n. sp. (Rodentia, Caviomorpha, Echimyidae), represented by a noteworthy-preserved skull and mandible from the early-middle Pleistocene outcrops at the coastal cliffs of southeastern Buenos Aires Province (Central Argentina). Phylogenetic analyses allow us to propose that the new species described here and the already known Eurzygomatomys mordax (Winge), represent a new genus closely related to the living Euryzygomatomys spinosus and Clyomys laticeps. The new genus differs from Euryzygomatomys and Clyomys by having much more procumbent upper incisors, a more developed fossa for the M. temporalis, more flared and laterally expanded zygomatic arches, frontal less markedly expanded posteriorly, jugals much deeper anteriorly than posteriorly, with the dorsal border descending more abruptly posteriorly, smaller orbital cavity, and external auditory meatus relatively smaller and slanted upward and backward. Several features of the new species reflect a higher degree of adaptation to semifossorial habits than those of E. spinosus. The origin of the semifossorial ecomorphotype within echimyids may have been triggered by the expansion of relatively open and arid environments that arose near the Miocene-Pliocene boundary. The record of this new echimyid in Central Argentina indicates that during the early Pleistocene, the southern limit of the geographic range of extinct representatives of the Brazilian lineage of semifossorial echimyids extended further south than that of their living members.
Data from: Inbreeding and inbreeding depression of early life traits in a cooperative mammal
Mating between relatives often results in negative fitness consequences or inbreeding depression. However, the expression of inbreeding in populations of wild cooperative mammals and the effects of environmental, maternal and social factors on inbreeding depression in these systems are currently not well understood. This study uses pedigree-based inbreeding coefficients from a long-term study of meerkats (Suricata suricatta) in South Africa to reveal that 44% of the population have detectably non-zero (F>0) inbreeding coefficients. 15% of these inbred individuals were the result of moderate inbreeding (F≥0.125), although such inbreeding events almost solely occurred when mating individuals had no prior experience of each other. Inbreeding depression was evident for a range of traits: pup mass at emergence from the natal burrow, hind-foot length, growth until independence and juvenile survival. However, we found no evidence of significant inbreeding depression for skull and forearm length or for pup survival. This research provides a rare investigation into inbreeding in a cooperative mammal, revealing high levels of inbreeding, considerable negative consequences and complex interactions with the social environment.
Data from: Establishing macroecological trait datasets: digitalization, extrapolation, and validation of diet preferences in terrestrial mammals worldwide
Ecological trait data are essential for understanding the broad-scale distribution of biodiversity and its response to global change. For animals, diet represents a fundamental aspect of species' evolutionary adaptations, ecological and functional roles, and trophic interactions. However, the importance of diet for macroevolutionary and macroecological dynamics remains little explored, partly because of the lack of comprehensive trait datasets. We compiled and evaluated a comprehensive global dataset of diet preferences of mammals ("MammalDIET"). Diet information was digitized from two global and cladewide data sources and errors of data entry by multiple data recorders were assessed. We then developed a hierarchical extrapolation procedure to fill-in diet information for species with missing information. Missing data were extrapolated with information from other taxonomic levels (genus, other species within the same genus, or family) and this extrapolation was subsequently validated both internally (with a jack-knife approach applied to the compiled species-level diet data) and externally (using independent species-level diet information from a comprehensive continentwide data source). Finally, we grouped mammal species into trophic levels and dietary guilds, and their species richness as well as their proportion of total richness were mapped at a global scale for those diet categories with good validation results. The success rate of correctly digitizing data was 94%, indicating that the consistency in data entry among multiple recorders was high. Data sources provided species-level diet information for a total of 2033 species (38% of all 5364 terrestrial mammal species, based on the IUCN taxonomy). For the remaining 3331 species, diet information was mostly extrapolated from genus-level diet information (48% of all terrestrial mammal species), and only rarely from other species within the same genus (6%) or from family level (8%). Internal and external validation showed that: (1) extrapolations were most reliable for primary food items; (2) several diet categories ("Animal," "Mammal," "Invertebrate," "Plant," "Seed," "Fruit," and "Leaf") had high proportions of correctly predicted diet ranks; and (3) the potential of correctly extrapolating specific diet categories varied both within and among clades. Global maps of species richness and proportion showed congruence among trophic levels, but also substantial discrepancies between dietary guilds. MammalDIET provides a comprehensive, unique and freely available dataset on diet preferences for all terrestrial mammals worldwide. It enables broad-scale analyses for specific trophic levels and dietary guilds, and a first assessment of trait conservatism in mammalian diet preferences at a global scale. The digitalization, extrapolation and validation procedures could be transferable to other trait data and taxa.
Data from: Distributions of mammals in Southeast Asia: the role of the legacy of climate and species body mass
Aim: Current species distributions are shaped by present and past biotic and abiotic factors. Here we assessed whether abiotic factors (habitat availability) in combination with past connectivity and a biotic factor (body mass) can explain the unique distribution pattern of Southeast Asian mammals, which are separated by the enigmatic biogeographic transition zone, the Isthmus of Kra (IoK), for which no strong geophysical barrier exists. Location: Southeast Asia Taxon: Mammals Methods: We projected habitat suitability for 125 mammal species using climate data for the present period and for two historic periods: mid-Holocene (6 kya) and last glacial maximum (LGM 21 kya). Next, we employed a phylogenetic linear model to assess how present species distributions were affected by the suitability of areas in these different periods, habitat connectivity during LGM and species body mass. Results: Our results show that cooler climate during LGM provided suitable habitat south of IoK for species presently distributed north of IoK (in mainland Indochina). However, the potentially suitable habitat for these Indochinese species did not stretch very far southwards onto the exposed Sunda Shelf. Instead, we found that the emerged landmasses connecting Borneo and Sumatra provided suitable habitat for forest dependent Sundaic species. We show that for species whose current distribution ranges are mainly located in Indochina, the area of the distribution range that is located south of IoK is explained by the suitability of habitat in the past and present in combination with the species body mass. Main conclusions: We demonstrate that a strong geophysical barrier may not be necessary for maintaining a biogeographic transition zone for mammals, but that instead a combination of abiotic and biotic factors may suffice.
Data from: Climatic conditions cause spatially dynamic polygyny thresholds in a large mammal
The polygyny threshold (PT) is a critical transition point in the sexual selection process for many organisms in natural populations, characterizing when females choose to mate with an already mated male over an unmated one to improve fitness. Understanding its causes and consequences is therefore of high interest. While both theoretical and empirical work suggest that the degree of polygyny within a species is plastic and a function of male inequality, the functional relationship between underlying availability of resources occupied by breeding males under variable climatic conditions and the dynamics of PTs across space and time has received less attention. Here, we use a standardized measure of male mating inequality as the culmination of female mate choices to analyse how spatially dynamic PTs in a naturally regulated feral horse (Equus ferus caballus) population emerge along a geographic gradient in a known, limiting resource (freshwater) each year from variable climatic conditions. Polygyny threshold distance from permanent freshwater increased with increasing precipitation during the breeding season of each year, suggesting a relationship between annual resource availability and female mate choice. The mechanism by which climatic conditions underpin the spatial dynamics of PTs was likely through precipitation providing ephemeral freshwater sources across the study area that effectively weakened the gradient in availability of permanent freshwater, thereby providing mating males that occupied home ranges far from permanent water with access to this limiting resource and enabling them to attract and retain females. Increased precipitation also coincided with a decreased proportion of males in the population that experienced sexual selection pressure attributed to female mate choice in relation to the acquisition and/or defence of freshwater sources. Climatic conditions caused spatial shifts in PTs annually along the geographic gradient in resource availability. Our findings reveal that such environmental gradients may either buffer or amplify impacts of climatic variation on selection pressure operating in natural populations, and emphasize the importance of integrating spatially explicit PTs with atmospheric fluctuations when predicting the effect of climatic change on selection processes within populations that occupy environmental gradients.
Data from: Local molecular clocks in three nuclear genes: divergence times for rodents and other mammals and incompatibility among fossil calibrations.
Reconstructing the chronology of mammalian evolution is a debated issue between molecule- and fossil-based inferences. A methodological limitation of molecules is the evolutionary rate variation among lineages, precluding the application of the global molecular clock. We considered 2422 first and second codon positions of the combined ADRA2B, IRBP, and vWF nuclear genes for a well-documented set of placentals including an extensive sampling of rodents. Using seven independent calibration points and a maximum-likelihood framework, we evaluated whether molecular and paleontological estimates of mammalian divergence dates may be reconciled by the local molecular clocks approach, allowing local constancy of substitution rates with variations at larger phylogenetic scales. To handle the difficulty of choosing among all possible rate assignments for various lineages, local molecular clocks were based on the results of branch-length and two-cluster tests. Extensive lineage-specific variation of evolutionary rates was detected, even among rodents. Cross-calibrations indicated some incompatibilities between divergence dates based on different paleontological references. To decrease the impact of a single calibration point, estimates derived from independent calibrations displaying only slight reciprocal incompatibility were averaged. The divergence dates inferred for the split between mice and rats (approximately 13-19 Myr) was younger than previously published molecular estimates. The most recent common ancestors of rodents, primates and rodents, boreoeutherians, and placentals were estimated to be, respectively, approximately 60, 70, 75, and 78 Myr old. Global clocks, local clocks, and quartet dating analyses suggested a Late Cretaceous origin of the crown placental clades followed by a Tertiary radiation of some placental orders like rodents.
Data from: Genetic effects on mating success and partner choice in a social mammal
Mating behavior has profound consequences for two phenomena - individual reproductive success and the maintenance of species boundaries - that contribute to evolutionary processes. Studies of mating behavior in relation to individual reproductive success are common in many species, but studies of mating behavior in relation to genetic variation and species boundaries are less commonly conducted in socially complex species. Here, we leveraged extensive observations of a wild yellow baboon (Papio cynocephalus) population that has experienced recent gene flow from a close sister taxon, the anubis baboon (Papio anubis), to examine how admixture-related genetic background affects mating behavior. We identified novel effects of genetic background on mating patterns, including an advantage accruing to anubis-like males and assortative mating among both yellow-like and anubis-like pairs. These genetic effects acted alongside social dominance rank, inbreeding avoidance, and age to produce highly nonrandom mating patterns. Our results suggest that this population may be undergoing admixture-related evolutionary change, driven in part by nonrandom mating. However, the strength of the genetic effects is mediated by behavioral plasticity and social interactions, emphasizing the strong influence of social context on mating behavior in socially complex species.
Data from: Inbreeding depression by environment interactions in a free-living mammal population
Experimental studies often find that inbreeding depression is more severe in harsh environments, but the few studies of in situ wild populations available to date rarely find strong support for this effect. We investigated evidence for inbreeding depression by environment interactions in nine traits in the individually monitored Soay sheep population of St Kilda, using genomic inbreeding coefficients based on 37 037 single-nucleotide polymorphism loci, and population density as an axis of environmental variation. All traits showed variation with population density and all traits showed some evidence for depression because of either an individual's own inbreeding or maternal inbreeding. However, only six traits showed evidence for an interaction in the expected direction, and only two interactions were statistically significant. We identify three possible reasons why wild population studies may generally fail to find strong support for interactions between inbreeding depression and environmental variation compared with experimental studies. First, for species with biparental inbreeding only, the amount of observed inbreeding in natural populations is generally low compared with that used in experimental studies. Second, it is possible that experimental studies sometimes actually impose higher levels of stress than organisms experience in the wild. Third, some purging of the deleterious recessive alleles that underpin interaction effects may occur in the wild.
Data from: The nature of nurture in a wild mammal's fitness
Genetic variation in fitness is required for the adaptive evolution of any trait but natural selection is thought to erode genetic variance in fitness. This paradox has motivated the search for mechanisms that might maintain a population's adaptive potential. Mothers make many contributions to the attributes of their developing offspring and these maternal effects can influence responses to natural selection if maternal effects are themselves heritable. Maternal genetic effects (MGEs) on fitness might, therefore, represent an underappreciated source of adaptive potential in wild populations. Here we used two decades of data from a pedigreed wild population of North American red squirrels to show that MGEs on offspring fitness increased the population's evolvability by over two orders of magnitude relative to expectations from direct genetic effects alone. MGEs are predicted to maintain more variation than direct genetic effects in the face of selection, but we also found evidence of maternal effect trade-offs. Mothers that raised high-fitness offspring in one environment raised low-fitness offspring in another environment. Such a fitness trade-off is expected to maintain maternal genetic variation in fitness, which provided additional capacity for adaptive evolution beyond that provided by direct genetic effects on fitness.
Data from: An experimental test of whether pyrodiversity promotes mammal diversity in a northern Australian savanna
1. The increasing awareness that a fire regime that promotes biodiversity in one system can threaten biodiversity in another has resulted in a shift away from fire management based on vague notions of maximising pyrodiversity, towards determining the optimal fire regime based on the demonstrated requirements of target species. 2. We utilised a long-running, replicated fire experiment on Melville Island, the largest island off the northern Australian coast, to test the importance of pyrodiversity for native mammals in a northern Australian savanna landscape. We first developed statistical models to determine how native mammal abundance has responded to nine years of experimentally-manipulated fire frequency. Next, given each species' modelled response to fire frequency, we identified the level of pyrodiversity and optimal mix of fire frequencies that would be expected to maximise mammal diversity and abundance, and minimise extinction risk. This was done for both the entire mammal assemblage and for the mammal species currently declining on Melville Island. 3. Fire frequency was a significant predictor of abundance of the northern brown bandicoot (Isoodon macrourus), black-footed tree-rat (Mesembriomys gouldii), brush-tailed rabbit-rat (Conilurus penicillatus), grassland melomys (Melomys burtoni), pale field-rat (Rattus tunneyi), and mice/dunnarts but not for the common brushtail possum (Trichosurus vulpecula). 4. The geometric mean abundance (GMA) of the entire mammal assemblage was positively associated with pyrodiversity, but peaked at an intermediate value. Hence, maximising pyrodiversity would reduce native mammal assemblage GMA below its potential maximum. The fire history for an area that maximised the entire native mammal assemblage GMA consisted of 57% long-unburnt, 43% triennially burnt and <1% annually burnt. Pyrodiversity did not reduce the extinction risk, nor increase the GMA of declining mammals above that predicted in areas entirely annually or triennially burnt. 5. Synthesis and applications: We demonstrate a useful approach with which to develop fire management strategies based on the demonstrated requirements of target species. By comparing the optimal fire regime identified for the conservation of threatened species and that identified for the entire mammal assemblage, we demonstrate the flexibility of this approach to tailor fire management to address specific management priorities in other fire-prone environments.
Data from: The evolution of mammal body sizes: responses to Cenozoic climate change in North American mammals
Explanations for the evolution of body size in mammals have remained surprisingly elusive despite the central importance of body size in evolutionary biology. Here, we present a model which argues that the body sizes of Nearctic mammals were moulded by Cenozoic climate and vegetation changes. Following the early Eocene Climate Optimum, forests retreated and gave way to open woodland and savannah landscapes, followed later by grasslands. Many herbivores that radiated in these new landscapes underwent a switch from browsing to grazing associated with increased unguligrade cursoriality and body size, the latter driven by the energetics and constraints of cellulose digestion (fermentation). Carnivores also increased in size and digitigrade, cursorial capacity to occupy a size distribution allowing the capture of prey of the widest range of body sizes. With the emergence of larger, faster carnivores, plantigrade mammals were constrained from evolving to large body sizes and most remained smaller than 1 kg throughout the middle Cenozoic. We find no consistent support for either Cope's Rule or Bergmann's Rule in plantigrade mammals, the largest locomotor guild (n = 1186, 59% of species in the database). Some cold-specialist plantigrade mammals, such as beavers and marmots, showed dramatic increases in body mass following the Miocene Climate Optimum which may, however, be partially explained by Bergmann's rule. This study reemphasizes the necessity of considering the evolutionary history and resultant form and function of mammalian morphotypes when attempting to understand contemporary mammalian body size distributions.
Data from: Is biasing offspring sex ratio adaptive? a test of Fisher's principle across multiple generations of a wild mammal in a fluctuating environment
Fisher's principle explains that population sex ratio in sexually reproducing organisms is maintained at 1:1 due to negative frequency-dependent selection, such that individuals of the rare sex realize greater reproductive opportunity than individuals of the more common sex until equilibrium is reached. If biasing offspring sex ratio towards the rare sex is adaptive, individuals that do so should have a higher number of grandoffspring. In a wild population of North American red squirrels (Tamiasciurus hudsonicus) that experiences fluctuations in resource abundance and population density, we show that overall across 26 years, the secondary sex ratio was 1:1; however, stretches of years during which adult sex ratio was biased did not yield offspring sex ratios biased towards the rare sex. Females that had litters biased towards the rare sex did not have more grandoffspring. Critically, adult sex ratio was not temporally autocorrelated across years, thus the population sex ratio experienced by parents was independent of the population sex ratio experienced by their offspring by the time of their primiparity. Expected fitness benefits of biasing offspring sex ratio may be masked or negated by fluctuating environments across years, which limit the predictive value of the current sex ratio.
Data from: Multiple mating is linked to social setting, and benefits the males in a communally rearing mammal
Individuals in social species may mate with multiple opposite sex individuals, including members of the same or different social groups. This variation may be linked to genetic benefits, where multiple mating decreases risk of inbreeding. Multiple mating also may be constrained by the socio-spatial setting through its effect on availability of mates. Since multiple mating with individuals from same or different groups may determine sex-specific fitness effects, we also examined how multiple mating modulates social benefits of females and males. We used 7 years of data on demography, social organization, and genetics of a natural population of the group-living and colonial rodent, Octodon degus, to determine how kin and sex composition within social groups, and spatial relations between these groups (i.e., colonial habits) influence multiple mating and its fitness consequences. 81.3% of males and 64.9% of females produced offspring with multiple opposite sex individuals within groups and with individuals of neighboring groups. Thus, polygynandry was the dominant mating system in the degu population examined. Multiple mating in degus was high when compared with estimates reported in other social mammals. Variation in female and male multiple mating was better explained by social setting through its effect on availability of potential mates rather than by benefits derived from decreasing risk of inbreeding. Finally, our study revealed how multiple mating enhances male, but not female reproductive success.
Data from: Placentation and maternal investment in mammals
The mammalian placenta exhibits striking interspecific morphological variation, yet the implications of such diversity for reproductive strategies and fetal development remain obscure. More invasive hemochorial placentas, in which fetal tissues directly contact the maternal blood supply, are believed to facilitate nutrient transfer, resulting in higher fetal growth rates, and to be a state of relative fetal advantage in the evolution of maternal-offspring conflict. The extent of interdigitation between maternal and fetal tissues has received less attention than invasiveness but is also potentially important because it influences the surface area for exchange. We show that although increased placental invasiveness and interdigitation are both associated with shorter gestations, interdigitation is the key variable. Gestation times associated with highly interdigitated labyrinthine placentas are 44% of those associated with less interdigitated villous and trabecular placentas. There is, however, no relationship between placental traits and neonatal body and brain size. Hence, species with more interdigitated placentas produce neonates of similar body and brain size but in less than half the time. We suggest that the effects of placental interdigitation on growth rates and the way that these are traded off against gestation length may be promising avenues for understanding the evolutionary dynamics of parent-offspring conflict.
Data from: Species discrimination of co-occurring small fossil mammals: a case study of the Cretaceous-Paleogene multituberculate genus Mesodma
The mammalian fossil record is largely composed of isolated teeth and tooth-bearing elements. In vertebrate microfossil assemblages with closely related, co-occurring species of mammals, it can be difficult to identify isolated teeth to species level because morphological differences among species may be slight and based on a single tooth position. Here we investigate the utility of the allegedly diagnostic lower fourth premolar (p4) for species-level identification in the genus Mesodma (Multituberculata, Neoplagiaulacidae). We conducted linear and geometric morphometrics on 86 p4s representing four Cretaceous-Paleogene (K-Pg) species of Mesodma that are common in deposits of the western interior of North America. Although Mesodma has been extensively discussed in the literature, these four species overlap considerably in p4 size and shape, making species-level identifications challenging. Using linear measurements, landmarks, and semilandmarks, we quantified p4 size and shape to understand morphological variation across the genus and uncover practical sources of morphological differentiation among the species represented here. Our results indicate (1) size is more important than shape for identifying p4s of Mesodma species; p4 shape varies across the genus, but cannot be used alone to identify isolated p4s to species; (2) M. garfieldensis and M. thompsoni cannot be distinguished from each other using p4 size or shape; we therefore subsume M. garfieldensis within M. thompsoni; and (3) M. formosa increased in size across the K-Pg boundary. In light of these results, we recommend that taxonomic diagnoses relying on isolated teeth incorporate quantitative analyses of morphology whenever possible to increase the accuracy of species-level identifications and paleofaunal studies that employ them.
Harpoon Base, Sea mammal bone. XCB-105-3578
Harpoon Base, Sea mammal bone. XCB-105-3578. 400 BCE-100 CE XCB-105 Adamagan (Aleut for place of walrus hunters) is at the head of Morzhovoi Bay, western Alaska Peninsula. It is a massive village with multiple occupations. When it was occupied 400 BCE-100 CE, it was the largest village in the Arctic with an estimated 1000 people. It also has limited occupations dated 2200-1700 BCE, 1000-600 BCE, and 900-1100 CE. The Western Alaska Peninsula artifacts are presented as a result of the research conducted under grants NSF 9630072, NSF 9814086, NSF 9996372, NSF 9996415, NSF 1139266, NSF 1321411. H. Maschner, Principal Investigator. These artifacts were scanned with either a Faro Edge Arm or a Minolta Vivid 9i. Processed in Geomagic or Polyworks. 2-8 photos were used for texture in Geomagic Wrap. Original digitizing work done at the IVL at Id. St. Univ. Subsequent processing and publication completed at Global Digital Heritage. License: Source: Objaverse 1.0 / Sketchfab
FIGURE 1. African mammal species described between January 1 1989 and December 31 2008 in A synthesis of African and western Indian Ocean Island mammal taxa (Class: Mammalia) described between 1988 and 2008: an update to Allen (1939) and Ansell (1989)
FIGURE 1. African mammal species described between January 1 1989 and December 31 2008, per year. The spike in 2006 is due largely to Louis et al. (2006b).
FIGURE 2 in A synthesis of African and western Indian Ocean Island mammal taxa (Class: Mammalia) described between 1988 and 2008: an update to Allen (1939) and Ansell (1989)
FIGURE 2. Accrual of newly described species per year, by Order, between January 1 1989 and December 31 2008.
FIGURE 19 in Small mammals of the mid-Araguaia River in central Brazil, with the description of a new species of climbing rat
FIGURE 19. Dorsal, ventral and lateral views of skull and mandible of Thrichomys sp. (male, UFES 1407).
FIGURE 15 in Small mammals of the mid-Araguaia River in central Brazil, with the description of a new species of climbing rat
FIGURE 15. Detailed views of incisive foramen (left), mesopterigoyd fossa (middle) and subsquamosal foramen (right) of Rhipidomys ipukensis n. sp. (a: MN 73741) and Rhipidomys emiliae (b: DPO 10).
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.