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2,848 results for “sequence data”
Illumina Sequencing data of the influence of Insulator Proteins on chromatin
GEO Series GSE57166. Drosophila melanogaster. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
RNA sequencing data of liver macrophages
GEO Series GSE197695. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
EGR2 in vitro ChIP-Sequencing data [SCC-25 CD36_KD]
GEO Series GSE169414. Homo sapiens. 12 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Precision nuclear run-on sequencing (PRO-Seq) data
GEO Series GSE169679. Homo sapiens. 8 samples. Type: Expression profiling by high throughput sequencing; Other.
RNA sequencing data from murine KP230 undifferentiated pleomorphic sarcoma cells treated with N-Benzylquinazolin-4-amine (NB4A)
GEO Series GSE198909. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
RNA sequencing data of mouse caecum tissue following different dietary treatments
GEO Series GSE281400. Mus musculus. 43 samples. Type: Expression profiling by high throughput sequencing.
EGR2 in vitro ChIP-Sequencing data [SCC-25 (pLKO.1)]
GEO Series GSE169417. Homo sapiens. 12 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Fig. Sa/b: (a) Strict consensus of 2 most parsimonious trees generated by exact analysis of sequence data. Numbers on branches represent bootstrap node confidence values from 100 replications. (b) Jac support tree. Numbers on branches represent confidence frequencies in nodes as quantified by parsimony jacknifing with Jac (Farris 1995). in Morphological and mitochondrial-DNA variation in Rhinolophus rouxii (Chiroptera)
Fig. Sa/b: (a) Strict consensus of 2 most parsimonious trees generated by exact analysis of sequence data. Numbers on branches represent bootstrap node confidence values from 100 replications. (b) Jac support tree. Numbers on branches represent confidence frequencies in nodes as quantified by parsimony jacknifing with Jac (Farris 1995).
FIGURE 33 in Mitochondrial sequence data clarify species concepts in the Cyclocephala mafaffa species complex (Coleoptera: Scarabaeidae: Dynastinae: Cyclocephalini)
FIGURE 33. Cyclocephala mafaffa species complex branch from the most likely tree for the Cyclocephala COI dataset. Red branches indicate the groups delimited by the bPTP, PTP, and mPTP procedures. Each colored bar represents a species delimited by ABGD (initial partition), bPTP, PTP, or mPTP procedures. Red support values are the posterior probability that those terminals form one species under the PTP model and a flat prior. Green and purple values indicate the fraction of MCMC sampled delimitations in which a node was part of the speciation process in the PTP and mPTP procedures, respectively. Specimen voucher numbers or GenBank accessions are in parentheses followed by a three-letter country code. CRI = Costa Rica, GLP = Guadeloupe, GTM = Guatemala, HND = Honduras, KNA = St. Kitts and Nevis, MEX = Mexico, NIC = Nicaragua, PAN = Panama, SLV = El Salvador, VEN = Venezuela.
FIGURE 31. Bootstrap consensus tree from W in Mitochondrial sequence data clarify species concepts in the Cyclocephala mafaffa species complex (Coleoptera: Scarabaeidae: Dynastinae: Cyclocephalini)
FIGURE 31. Bootstrap consensus tree from W-IQ-TREE analysis. Node support values from left to right are maximum likelihood bootstrap, parsimony bootstrap, and Bayesian posterior probability. Support values labeled with a "*" have 100% bootstrap support or 1.0 posterior probability. Support values labeled with a "-" have bootstrap supports lower than 50% or posterior probability lower than 0.95. Nodes labeled "--" indicates that node was not recovered by an analysis. Colored branches highlight taxa of the C. mafaffa species complex (green = C. deceptor; red = C. mafaffa mafaffa; blue = C. mafaffa grandis).
16S sequencing data of plankton
<p>These are the original 16S DNA sequencing data based on the collected planktonic microorganisms, and classified by serial number. All data were double ended sequencing data.</p>
Data from: Development and validation of a core genome multilocus sequence typing (cgMLST) scheme for Klebsiella oxytoca
<p>The dataset hereby shared contains the genomes used to create and validate a newly proposed schema for <i>Klebsiella oxytoca.</i> </p><p>As reference dataset, all publicly available <i>K. oxytoca</i> draft and complete genomes (199) were downloaded from RefSeq in NCBI database in September 2021. All assemblies were filtered by quality and identification methods in order to remove highly fragmented genomes (more than 200 contigs) and genomes that did not correspond to <i>K. oxytoca sensu stricto</i>. A series of assemblies, including complete and draft genomes, were removed because they (i) did not correspond to <i>K. oxytoca</i> species based on MLST or rMLST, and because they (ii) produced ANI values lower than 96% against <i>K. oxytoca</i>. Apart from some genomes that had no correspondence to<i> K. oxytoca,</i> several others were discarded because they did not correspond to <i>K. oxytoca </i>species sensu stricto, but other closely related species included in the <i>K. oxytoca </i>species complex, such as <i>K. michiganensis</i> or <i>K. grimontii.</i> Additional identification of blaOXY gene variants supported this observation. Finally, genomes that had not been assigned an assigned ST were also removed, since they would not contribute to the schema validation. Therefore, the final dataset consisted in 16 high-quality complete genomes of <i>K. oxytoca sensu stricto. </i></p><p> </p>
Identification of viruses associated with larvae of the dragonfly Leucorrhinia dubia, and damselfly Coenagrion puella from RNA sequencing data
Open the record for dataset details and reuse information.
Data from: Genome sequences of two diploid wild relatives of cultivated sweetpotato reveal targets for genetic improvement
Abstract missing
FIGURE 13 in Taxonomy of European Damaeidae (Acari, Oribatida) XI. European species of the genus Piribelba Miko 2021: redescriptions of P. rossica (Bulanova-Zachvatkina 1957) and P. piriformis (Mihelčič, 1964) using morphology and DNA sequence data
FIGURE 13. Piribelba rossica (Bulanova-Zachvatkina, 1957), protonymph from Kemerovo region: A—leg I, right, antiaxial view; B—leg II, right, antiaxial view; C—leg III, right, antiaxial view; D—leg IV, right, antiaxial view. Scale bar 100 μm.
FIGURE 6 in Description of nymphs and female subimago of Sparsorythus multilabeculatus Sroka & Soldán, 2008 (Ephemeroptera: Tricorythidae) associated with male imago based on DNA sequence data
FIGURE 6. Sparsorythus multilabeculatus, nymph, 6a. labrum; 6b. maxilla; 6c. left mandible; 6d. right mandible; 6e. left prostheca; 6f. right prostheca; 6g. hypopharyngeal lingua; 6h. labium. Scale bars: 0.1 mm (6a–6d, 6g, 6h); 0.01 mm (6e, 6f).
FIGURE 3. A in Description of nymphs and female subimago of Sparsorythus multilabeculatus Sroka & Soldán, 2008 (Ephemeroptera: Tricorythidae) associated with male imago based on DNA sequence data
FIGURE 3. A Maximum Likelihood phylogenetic reconstruction based on sequences of the mitochondrial COI gene. Sparsorythus buntawensis, Sparsorythus gracilis, Sparsorythus sescarorum and Tricorythodes explicates sequences from GenBank from aligned COI sequence of 452 bp. Nodal support values are bootstrap values (percentage of 1000 replicate). Scale bar indicates 0.05 nucleotide substitutions.
FIGURE 8 in Description of nymphs and female subimago of Sparsorythus multilabeculatus Sroka & Soldán, 2008 (Ephemeroptera: Tricorythidae) associated with male imago based on DNA sequence data
FIGURE 8. Sparsorythus multilabeculatus, section of segment VII abdominal terga. Scale bars: 0.1 mm.
Fig. 2 in Using multi-locus sequence data for addressing species boundaries in commonly accepted lichen-forming fungal species
Fig. 2 Maximum likelihood (ML) phylogenetic relationships of Diploschistes taxa inferred from a combined 6-locus analysis. Values at each node indicate nonparametric bootstrap support (BS)/posterior
FIGURE 2 in Systematic position of Rivina humilis var. humilis, R. humilis var. bracteata and R. bengalensis based on nrDNA ITS and cpDNA rbcL & trnH-psbA sequence data
FIGURE 2. Best ML tree retrieved after analysing 14 taxa of family Phytolaccaceae. (Combined rbcL + trnH-psbA. The best fit model of evolution GTR+G+I. The tree rooted at Phytolacca acinose (Lee et al. 2013).
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.