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2,848 results for “sequence data”
Supplementary Table S2. DNA polymorphisms in gene sequences of 56 sea buckthorn accessions based on the analysis of whole-genome sequencing data.
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TABLE 1 in Combining target enrichment and Sanger sequencing data to clarify the systematics of the diverse Neotropical butterfly subtribe Euptychiina (Nymphalidae, Satyrinae)
<p><b>TABLE 1</b> Comparison of characters for distinguishing <i>Deltaya</i> gen.n., <i>Modica</i> gen.n. and related genera.</p><table><tbody><tr><th></th><th><i>Modica gen.n.</i></th><th><i>Emeryus</i></th><th><i>Paryphthimoides</i></th><th><i>Colombeia</i></th><th><i>Scriptor</i></th><th><b><i>Deltaya</i> gen.n.</b></th><th><i>Malaveria</i></th></tr></tbody><tbody><tr><th>Eyes: hair-like setae</th><td>Present</td><td>Absent</td><td>Present</td><td>Present</td><td>Present</td><td>Present</td><td>Present</td></tr><tr><th>DHW pale pupil dots in ocellus in cell Cu2-Cu1</th><td>Visible</td><td>Not visible</td><td>Variably visible</td><td>Variably visible</td><td>Not visible</td><td>Not visible</td><td>Not visible</td></tr><tr><th>VFW: prominent dark brown band (umbra) underlying postdiscal ocelli</th><td>Yes</td><td>No</td><td>Yes, somewhat (except almost absent in <i>P</i>. <i>poltys</i>, <i>P</i>. <i>vestigiata</i>)</td><td>Yes</td><td>Yes</td><td>Yes</td><td>No or weak umbra</td></tr><tr><th>VHW: dark marginal line in tornus</th><td>Thin, not broadening</td><td>Thin, not broadening</td><td>Thin, not broadening (except <i>P</i>. <i>sheba</i>, <i>P</i>. <i>pseudoconfusa</i>)</td><td>Marginal line slightly broader throughout wing</td><td>Broadening</td><td>Broadening</td><td>Thin, not broadening</td></tr><tr><th>VHW: postdiscal ocelli in cells Cu1- M3 and M3-M2</th><td>Double pupils (silver dots or elongate dashes) distinctly ringed with yellow</td><td>Where present, double pupils (silver dots) distinctly ringed with yellow</td><td>Variable across species, either double pupils (silver dots) distinctly ringed with yellow, or single pupil (an elongate silver smudge) indistinctly ringed with orange</td><td>Where present, double pupils (silver dots) distinctly ringed with yellow</td><td>Single pupil (an elongate silver smudge) indistinctly ringed with orange</td><td>Double pupils (silver dots or elongate dashes) distinctly ringed with yellow</td><td>Double pupils (silver dots or elongate dashes) distinctly ringed with yellow</td></tr><tr><th>Male genitalia aedeagus: cornuti</th><td>Variably present</td><td>Present</td><td>Present</td><td>Absent</td><td>Absent</td><td>Present (except in <i>D</i>. <i>andrei</i> and <i>D</i>. <i>probata</i>)</td><td>Absent</td></tr><tr><th>Female genitalia: lamella antevaginalis</th><td>No sclerotized lamella antevaginalis</td><td>Wrinkled, sclerotized lamella antevaginalis</td><td>Sclerotized lamella antevaginalis in some species</td><td>Sclerotized lamella antevaginalis</td><td>No sclerotized lamella antevaginalis</td><td>Sclerotized lamella antevaginalis (except in <i>D</i>. <i>andrei</i> and <i>D</i>. <i>probata</i>)</td><td>Sclerotized ‘spike’-like lamella antevaginalis</td></tr></tbody></table>
SouthAfrica_microbiome_2024: IMTA lab data: metadata encompassing DNA 16sRNA sequencing data
<p><span>Global DNA metadata with sample ID codes and decription of samples </span></p> <p><span>ASV_table. ASV read count table after normalization (2,500 counts per sample). </span></p> <p><span>Taxonomy table from each ASV-sample found</span></p>
Brasil_microbiome_2024: IMTA lab data: metadata encompassing DNA 16sRNA sequencing data
<p><span>Global DNA metadata with sample ID codes and decription of samples </span></p> <p><span> ASV_table. ASV read count table after normalization (2,500 counts per sample). </span></p> <p><span> Taxonomy table from each ASV-sample found</span></p>
FIGURE. Phylogram of Tolypocladium generated from Maximum likelihood analysis of ITS, SSU and LSU sequence data. Purpureocillium lilacinum (CBS 284.36) was selected as an outgroup taxon. The tree topology of the ML analysis was similar to the BI. Maximum likelihood bootstrap values greater than 75 and Bayesian posterior probabilities over 0.90 were indicated above the nodes. The scale bar indicates 0.006 changes. The new species was in blue. in Yunnan-Guizhou Plateau: a mycological hotspot
FIGURE. Phylogram of Tolypocladium generated from Maximum likelihood analysis of ITS, SSU and LSU sequence data. Purpureocillium lilacinum (CBS 284.36) was selected as an outgroup taxon. The tree topology of the ML analysis was similar to the BI. Maximum likelihood bootstrap values greater than 75 and Bayesian posterior probabilities over 0.90 were indicated above the nodes. The scale bar indicates 0.006 changes. The new species was in blue.
FIGURE 2 in A note on the identity of the spikenard (Nardostachys jatamansi, Caprifoliaceae) based on DNA sequence data
FIGURE 2. Sequence alignment data matrixes and unrooted MP tree. a, portions of the alignment matrixes of the rbcL (top panel) and matK (bottom panel) genes showing the variable nucleotide sites. Numbers at the top indicate nucleotide sites. Dots represent nucleotide sequence stretches of varying lengths. Asterisks represented below nucleotide base indicate identity. Numbers within parentheses following species name indicate GenBank accession numbers (the ones in bold represent accession numbers for sequences generated in the present study). b, unrooted MP tree of the ITS region demonstrating the genetic relatedness among the representatives of the genus Nardostachys included in the present study. Numbers on node denote bootstrap values.
Whole exome sequencing data from cholangiocarcinoma
GEO Series GSE220940. Homo sapiens. 14 samples. Type: Other.
H3K9me3 in vitro ChIP-Sequencing data [SCC-25]
GEO Series GSE169421. Homo sapiens. 12 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Illumina sequencing of CRAC data obtained with Ylr419w
GEO Series GSE252043. Saccharomyces cerevisiae. 6 samples. Type: Expression profiling by high throughput sequencing.
FFPE-ATAC and PDX-ATAC sequence data of small cell lung cancer
GEO Series GSE281523. Homo sapiens. 12 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
RNA sequencing data of primary cancer-associated fibroblasts (CAF) isolated from fresh ex vivo germ cell tumor (GCT) patient tissue
GEO Series GSE229047. Homo sapiens. 19 samples. Type: Expression profiling by high throughput sequencing.
Transcriptome sequencing data of goat submandibular glands at different ages
GEO Series GSE144368. Capra hircus. 9 samples. Type: Expression profiling by high throughput sequencing.
Data from: Genome sequences of two diploid wild relatives of cultivated sweetpotato reveal targets for genetic improvement
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16S sequencing data of plankton
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INTEGRATIVE ONCOGENOMIC AND HIGH-THROUGHPUT SEQUENCING ANALYSES OF THE COMMONLY DELETED REGION IN CHROMOSOME 7q32 IN SPLENIC MARGINAL ZONE LYMPHOMA (SNP data)
GEO Series GSE35329. Homo sapiens. 63 samples. Type: Genome variation profiling by SNP array; SNP genotyping by SNP array.
Expression data from A549 cells infected by adenovirus not carrying virus associated sequences in the genome.
GEO Series GSE58605. Homo sapiens. 9 samples. Type: Expression profiling by array.
Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data
GEO Series GSE25341. Homo sapiens. 16 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Deep sequencing data for PAM-SCANR tested CRISPR-Cas systems
GEO Series GSE75718. Escherichia coli; Halalkalibacterium halodurans; Francisella tularensis subsp. novicida; Streptococcus thermophilus. 14 samples. Type: Other.
High throughput sequencing data for Oryza sativa, Chlamydomonas reinhardtii, and Physcomitrella patens
GEO Series GSE266911. Physcomitrium patens; Chlamydomonas reinhardtii; Oryza sativa. 196 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Digital transformation of herbal medicine: Conversion to biological entity data using tonifying herbal medicine-induced transcriptome sequencing_Tonifying_HepG2
GEO Series GSE244707. Homo sapiens. 270 samples. Type: Expression profiling by high throughput sequencing.
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.