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Figs 9-12. Fig. 9 in Molecular and morphological approaches for species delimitation and hybridization investigations of two Cichla species
Figs 9-12. Fig. 9, patterns of PCR-multiplex for the COI mitochondrial gene. Fig. 10, PCR-RFLP patterns of the COI gene with NlaIV enzymes. Fig. 11, patterns of PCR-multiplex for the RAG nuclear gene. Fig. 12, PCR-RFLP patterns of the RAG gene with the BsrI enzyme. The species are indicated as: column 1, Cichla kelberi Kullander & Ferreira, 2006; column 2, Cichla piquiti Kullander & Ferreira, 2006; column 3 and 4, Cichla kelberi; column 5 and 6, Cichla piquiti; column 7 and 8, carijó; M, 1 kb molecular weight marker.
Fig. 8 in Molecular and morphological approaches for species delimitation and hybridization investigations of two Cichla species
Fig. 8. Restriction maps of the COI gene and RAG1 gene for the species Cichla kelberi Kullander & Ferreira, 2006 and Cichla piquiti Kullander & Ferreira, 2006.
Fig. 13 in Molecular and morphological approaches for species delimitation and hybridization investigations of two Cichla species
Fig. 13. Principal Component Analysis (PCA) for Cichla Bloch & Schneider, 1801 specimens using morphological data. Highlight: Cichla kelberi Kullander & Ferreira, 2006, Cichla piquiti Kullander & Ferreira, 2006 and carijó samples distribution.
Figs 4-6. Fig. 4 in Molecular and morphological approaches for species delimitation and hybridization investigations of two Cichla species
Figs 4-6. Fig. 4: Cichla kelberi Kullander & Ferreira, 2006; Fig. 5: Cichla piquiti Kullander & Ferreira, 2006; Fig. 6: carijó.
Fig. 7 in Molecular and morphological approaches for species delimitation and hybridization investigations of two Cichla species
Fig. 7. Recognition and orientation sites of universal and species-specific primers within regions of the mitochondrial (COI) and nuclear (RAG1) genes of Cichla Bloch & Schneider, 1801 species.
Figs. 2, 3. Fig. 2 in Molecular and morphological approaches for species delimitation and hybridization investigations of two Cichla species
Figs. 2, 3. Fig. 2 (adapted of Kullander & Ferreira, 2006), body measures used for morphological analyses of Cichla Bloch & Schneider, 1801 individuals: Standard length (1); head length (2); snout length (3); length of the lower jaw (4); length of the upper jaw (5); orbit diameter (6); head height (7); body height (8); length of pectoral fin (9); length of the dorsal fin spines (10); length of the dorsal fin radius (11); length of caudal peduncle (12); caudal peduncle height (13); and inter-orbital width (14). Fig. 3 (adapted of Kullander & Nijssen 1989): meristic parameters included the following measures. Numbers of dorsal fin spines (ED); dorsal fin radius (RD); upper lateral line scales (LS); lower lateral line scales (LI); pectoral fin radius (RP); and anal fin radius (RA).
Figure 7 in YELLOW WATER LILIES (NUPHAR, NYMPHAEACEAE) IN GREAT BRITAIN: A NEW HYBRID, A REAPPRAISAL OF RECORDS, AND A REVISED STATUS OF N. ADVENA
Figure 7. Sepals of: A, Nuphar advena from NA1 population, Spottiswoode Loch; B, Nuphar × porphyranthera from NH8 population, Oulten Park (left), and NH2 population, Godstone (right); C, N. lutea (no population code), Norbotten, Sweden. Scale bars are approximate (no measurements of the photographed features were taken). Photographs: R. V. Lansdown.
Figure 6. A in YELLOW WATER LILIES (NUPHAR, NYMPHAEACEAE) IN GREAT BRITAIN: A NEW HYBRID, A REAPPRAISAL OF RECORDS, AND A REVISED STATUS OF N. ADVENA
Figure 6. A, Petiole shape of Nuphar advena from NA1 population, Spottiswoode Loch. B, Petiole shape of Nuphar × porphyranthera from NH8 population, Oulten Park (left); NH6 population, Shropham Ponds (centre); and NH1 population, West Hoathly (right). C, Petiole shape of Nuphar lutea (no population code), Elterwater. Scale bars are approximate (no measurements of the photographed features were taken). Photographs: R. V. Lansdown.
Figure 4 in YELLOW WATER LILIES (NUPHAR, NYMPHAEACEAE) IN GREAT BRITAIN: A NEW HYBRID, A REAPPRAISAL OF RECORDS, AND A REVISED STATUS OF N. ADVENA
Figure 4. Habit of Nuphar × porphyranthera, showing decaying leaves in July 2020, from NH4 population, Painshill Park. Photograph: R. V. Lansdown.
Figure 2. A in YELLOW WATER LILIES (NUPHAR, NYMPHAEACEAE) IN GREAT BRITAIN: A NEW HYBRID, A REAPPRAISAL OF RECORDS, AND A REVISED STATUS OF N. ADVENA
Figure 2. A, Flower of Nuphar × porphyranthera with some stamens removed, from NH8 population, Oulton Park, June 2021. B, Sterile stamens of Nuphar × porphyranthera: filament length (fl), anther length (al). C, Fertile stamens of Nuphar advena. Scale bars are approximate (no measurements of the photographed features were taken). Photographs: R. V. Lansdown.
Figure 3 in YELLOW WATER LILIES (NUPHAR, NYMPHAEACEAE) IN GREAT BRITAIN: A NEW HYBRID, A REAPPRAISAL OF RECORDS, AND A REVISED STATUS OF N. ADVENA
Figure 3. Anther and filament lengths of Nuphar lutea (n = 30 from 3 populations), N. advena (n = 10 from 1 population) and their hybrid Nuphar × porphyranthera (n = 100 from 10 populations).
Figure 8 in YELLOW WATER LILIES (NUPHAR, NYMPHAEACEAE) IN GREAT BRITAIN: A NEW HYBRID, A REAPPRAISAL OF RECORDS, AND A REVISED STATUS OF N. ADVENA
Figure 8. Flowers and stamens of: A, Nuphar advena from NA1 population, Spottiswoode Loch; B, Nuphar × porphyranthera from NH8 population, Oulten Park (left), and NH1 population, West Hoathly (right); C, N. lutea (no population code), Elterwater (left) and Pop1 population, Ashtead (right). Scale bars are approximate (no measurements of the photographed features were taken). Photographs: R. V. Lansdown.
Figure 5 in YELLOW WATER LILIES (NUPHAR, NYMPHAEACEAE) IN GREAT BRITAIN: A NEW HYBRID, A REAPPRAISAL OF RECORDS, AND A REVISED STATUS OF N. ADVENA
Figure 5. Nuphar × porphyranthera: A, leaf shape from NH12 population, Auchnagairn House; B, leaf shape from NH6 population, Shropham Ponds; C, habit from NH12 population in drying-out pond, Auchnagairn House. Photographs: R. V. Lansdown.
Figure 10 in YELLOW WATER LILIES (NUPHAR, NYMPHAEACEAE) IN GREAT BRITAIN: A NEW HYBRID, A REAPPRAISAL OF RECORDS, AND A REVISED STATUS OF N. ADVENA
Figure 10. Nuphar lutea leaves: A, in July 2021 with a high proportion of emergent leaves, from Pop5 population, Carlingwark Loch, England; B, in August 2020 with a mixture of emergent and floating leaves, from Pop1 population, Ashtead Park, England; C, in July 2021 with submerged and floating leaves, from (no population code) Elterwater, England. Photographs: R. V. Lansdown.
Figure 1 in YELLOW WATER LILIES (NUPHAR, NYMPHAEACEAE) IN GREAT BRITAIN: A NEW HYBRID, A REAPPRAISAL OF RECORDS, AND A REVISED STATUS OF N. ADVENA
Figure 1. Location of the 26 Nuphar advena records in the Botanical Society of Britain & Ireland database. Populations sampled for genetic analysis are marked with a triangle.
Figure 9 in YELLOW WATER LILIES (NUPHAR, NYMPHAEACEAE) IN GREAT BRITAIN: A NEW HYBRID, A REAPPRAISAL OF RECORDS, AND A REVISED STATUS OF N. ADVENA
Figure 9. Habit of Nuphar advena, showing leaves in July 2021, from NA1 population, Spottiswoode Loch. Photograph: R. V. Lansdown.
»halb und halb« – Hybride Edition als Kompromiss? Appendix zur Dissertationsschrift
<p>This is the Appendix of the PhD thesis of Dennis Ried. It contains the digital parts of the thesis (Thesis will be published under DOI: <a title="PhD Thesis of Dennis Ried" href="https://doi.org/10.30819/5730" target="_blank" rel="noopener">10.30819/5730</a>).</p>
(08)-Strobl2021A-DS0003 – Tribolium castaneum Gruul #1 hybrid line long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy
<p>(08)-Strobl2021A-DS0003 – <em>Tribolium castaneum</em> Gruul #1 hybrid line long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy</p>
Hybrid iterating-averaging low photon budget Gabor holographic microscopy - dataset
<p>Dataset (Matlab files) containing holograms employed in:<br><br>M. Rogalski, P. Arcab, E. Wdowiak, J. Á. Picazo-Bueno, V. Micó, M. Józwik, and M. Trusiak, “Hybrid iterating-averaging low photon budget Gabor holographic microscopy,” Submitted 2024<br><br>This dataset should be used together with the codes present at:<br><a href="https://github.com/MRogalski96/IGA" target="_blank" rel="noopener">https://github.com/MRogalski96/IGA</a></p>
Datasets for paper "Frequent Ancient Hybridization Shape the Confounding Phylogeny of Pandanales"
<p><span>The phylogeny of Pandanales, an order of monocots comprising five distinct families (Cyclanthaceae, Pandanaceae, Stemonaceae, Triuridaceae, and Velloziaceae), has long been contentious, particularly concerning the placement of Triuridaceae. Previous phylogenetic studies have produced conflicting results, partly due to the limited scope of molecular data. In this study, we leveraged large-scale transcriptome sequencing from 17 Pandanales species and three outgroup samples, combined with whole-genome data for Acanthochlamys bracteata, to conduct a comprehensive phylogenetic analysis. Using both concatenation and coalescent-based methods, we generated a well-supported phylogeny for the group, revealing significant gene tree-species tree discordance. Our hybridization analyses revealed that ancient hybridization played a crucial role in shaping the evolutionary history of the Pandanaceae and Triuridaceae, providing a compelling explanation for the conflicting phylogenetic results in earlier studies. Additionally, whole-genome duplication (WGD) analyses identified five distinct WGD events across the order, suggesting these events played a critical role in the ecological diversification of the families. Our findings resolve key phylogenetic conflicts in Pandanales and underscore the importance of integrating hybridization detection and WGD analysis in understanding plant evolutionary history.</span></p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.