Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
360
datasets available to search
ShareScore release 0.7.1
Dataset results
360 results for “Microbes”
Mutual reinforcement of pathophysiological host-microbe interactions that maintain steady state conditions of disease
GEO Series GSE59320. Mus musculus. 16 samples. Type: Expression profiling by array.
Spatial coupling of microbes and immune cells in solid malignancies [LCM_stroma_epithelium]
GEO Series GSE155723. Homo sapiens. 16 samples. Type: Expression profiling by high throughput sequencing.
The effects of host-microbe interactions on cervicovaginal epithelial cells
GEO Series GSE234837. Homo sapiens. 81 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Evolutionary innovation through transcription factor rewiring in microbes is shaped by levels of transcription factor activity, expression, and existing connectivity
GEO Series GSE228016. Pseudomonas fluorescens. 15 samples. Type: Expression profiling by high throughput sequencing.
Indigenous gut microbes modulate neural cell state and neurodegenerative disease susceptibility [snRNA-seq]
GEO Series GSE289589. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing.
Host-Microbe Interactions in the Nasal Cavity of Dogs with Chronic Idiopathic Rhinitis
GEO Series GSE255529. Canis lupus familiaris. 12 samples. Type: Expression profiling by high throughput sequencing.
Spatial coupling of microbes and immune cells in solid malignancies [Whole_slides]
GEO Series GSE155722. Homo sapiens. 9 samples. Type: Expression profiling by high throughput sequencing.
Host and Microbe Blood Metagenomics Reveals Key Pathways Characterizing Critical Illness Phenotypes
GEO Series GSE236892. Homo sapiens. 189 samples. Type: Expression profiling by high throughput sequencing.
Tungsten is Utilized for Lactate Consumption and SCFA Production by a Dominant Human Gut Microbe Eubacterium limosum
GEO Series GSE281261. Eubacterium limosum. 12 samples. Type: Expression profiling by high throughput sequencing.
The effects of host-microbe interactions on the transcriptomic signatures of cervicovaginal epithelial cells [RNA-seq]
GEO Series GSE234836. Homo sapiens. 63 samples. Type: Expression profiling by high throughput sequencing.
Chloroplast redox status modulates genome-wide plant responses during plant-microbe interaction
GEO Series GSE92596. Nicotiana tabacum. 8 samples. Type: Expression profiling by array.
Tissue RNAsSeq of germ-free IL10KO versus WT mice in the presence or absence of human gut microbes
GEO Series GSE253945. Mus musculus. 108 samples. Type: Expression profiling by high throughput sequencing.
Spatial coupling of microbes and immune cells in solid malignancies.
GEO Series GSE213736. Mus musculus. 16 samples. Type: Expression profiling by high throughput sequencing.
Therapeutic Delivery of CCL2 Modulates Immune Response and Restores Host-microbe Homeostasis
GEO Series GSE274721. Mus musculus. 12 samples. Type: Expression profiling by high throughput sequencing; Other.
Trans-Golgi protein TVP23B regulates host-microbe interactions via Paneth cell homeostasis and Goblet cell glycosylation
GEO Series GSE224516. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
Integrated Analysis Of Biopsies From Inflammatory Bowel Disease Patients Identifies SAA1 As A Link Between Mucosal Microbes With TH17 And TH22 Cells
GEO Series GSE97012. Homo sapiens. 68 samples. Type: Expression profiling by array.
The Gut Microbe-Derived Metabolite Trimethylamine is a Biomarker of and Therapeutic Target in Alcohol-Associated Liver Disease
GEO Series GSE157681. Mus musculus. 16 samples. Type: Expression profiling by high throughput sequencing.
Next Generation RNA Sequencing - Delineation of Hepatic Transcriptome Governed by Liver Clock and Gut Microbes over Time
GEO Series GSE184303. Mus musculus. 72 samples. Type: Expression profiling by high throughput sequencing.
Microbes modulate sympathetic neurons via a gut-brain circuit
GEO Series GSE145986. Mus musculus. 24 samples. Type: Expression profiling by high throughput sequencing.
Integrated host-microbe metagenomics of cell-free nucleic acid for sepsis diagnosis in critically ill adults [paxgene]
GEO Series GSE189400. Homo sapiens. 221 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.