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763 results for “Mitochondrial DNA”
FIGURE 6 in Mitochondrial DNA sequence analysis of the spectacled salamander, Salamandrina terdigitata (Urodela: Salamandridae), supports the existence of two distinct species
FIGURE 6. Palaeogeographic scenario (Scenario B). (1) The Tyrrhenian basin in the Tortonian time (modified from OrszagSperber et al., 1993) with a land bridge connecting Sardinia with the peninsula. (2) Separation of the CalabroPeloritan massif (CPm) from Sardinia (modified from Duermeijer et al., 1998). Arrows hypothesize dispersal routes. See the text for comments.
FIGURE 5 in Mitochondrial DNA sequence analysis of the spectacled salamander, Salamandrina terdigitata (Urodela: Salamandridae), supports the existence of two distinct species
FIGURE 5. Palaeogeographic scenario (Scenario A). The Italian Peninsula in the Pliocene (modified from Pinna, 1989). Black triangles: sampling sites of Salamandrina populations included in the PER clade. Black stars: sampling sites of Salamandrina populations included in the TER clade. See text for details and confront to the Fig. 1.
FIGURE 4 in Mitochondrial DNA sequence analysis of the spectacled salamander, Salamandrina terdigitata (Urodela: Salamandridae), supports the existence of two distinct species
FIGURE 4. Haplotype network of Salamandrina terdigitata, reconstructed using parsimony probability as implemented in TCS. Each circle in the network corresponds to one observed haplotype. Size of circles is proportional to the number of individuals (in parentheses) carrying a given haplotype. The three letters codes of the populations are indicated; numbered codes in italic mean different individuals when more than one haplotype was found in a population.
FIGURE 3 in Mitochondrial DNA sequence analysis of the spectacled salamander, Salamandrina terdigitata (Urodela: Salamandridae), supports the existence of two distinct species
FIGURE 3. Maximum likelihood tree for Salamandrina terdigitata samples plus outgroup, based on combined 12S, 16S and cytb. HKY85+ model (ln = 2864.386; shape parameter = 0.1203) was assumed. Numbers in boxes (from top to bottom) are bootstrap support values for ML (100 replicates), MP (1000 replicates) and NJ (1000 replicates) and posterior probability percentages in the Bayesian analysis (2 million generators). Specimens are identified by code of sampling locality (as in Tab.1) and by a progressive number.
FIGURE 1. A in Mitochondrial DNA sequence analysis of the spectacled salamander, Salamandrina terdigitata (Urodela: Salamandridae), supports the existence of two distinct species
FIGURE 1. A female specimen of Salamandrina terdigitata from Lepini Mountains (Latium, Central Italy).
FIGURE 2 in Detection of two cryptic taxa in Meristogenys amoropalamus (Amphibia, Ranidae) through nuclear and mitochondrial DNA analyses
FIGURE 2. Distributions of haplotype frequencies of POMC for three lineages of M. cf. amoropalamus. The size of each circle indicates the number of samples examined from each locality. 1, Wario; 2, Poring, 3, Mesilau; 4, Kamborangah; 5, Liwagu; 6, Bundu Tuhan; 7, Mahua. KNP and CRNP indicate Kinabalu National Park and Crocker Range National Park, respectively.
FIGURE 1 in Detection of two cryptic taxa in Meristogenys amoropalamus (Amphibia, Ranidae) through nuclear and mitochondrial DNA analyses
FIGURE 1. Neighbor-joining tree of a 963-bp sequence of mitochondrial 12S rRNA and Cytb (left) and 1313-bp sequences of nuclear POMC, Rag-1, and rhodopsin (right) for species of Meristogenys. Numbers above or below branches represent bootstrap support for the NJ/MP inference for the respective clade (both 1000 replicates). Nodes with asterisks indicate significant support (>95%) by Bayesian inference. Lineage names were designated by Shimada et al. (2007) and the present study. The haplotypes of M. cf. amoropalamus are given using the locality name; Bu: Bundu Tuhan, Ka: Kamborangah, Li: Liwagu, Ma: Mahua, Me: Mesilau, Po: Poring, Wa: Wario. The number of adult and larval specimens of each haplotype of M. cf. amoropalamus is shown in parenthesis.
Figure 7. Mitochondrial DNA gene tree estimated for Acanthocercus atricollis using a in Lifting the blue-headed veil - integrative taxonomy of the Acanthocercus atricollis species complex (Squamata: Agamidae)
Figure 7. Mitochondrial DNA gene tree estimated for Acanthocercus atricollis using a portion of the 16S gene. The support for branches from BI and ML are shown on each branch, respectively. The *BEAST species tree is shown in the top left with posterior probability values on branches.
Figure 2 in Complete mitochondrial genome of Tetraophasis szechenyii Madarász, 1885 (Aves: Galliformes: Phasianidae), and its genetic variation as inferred from the mitochondrial DNA Control Region
Figure 2. Median-joining network of all the control region haplotypes found in Tetraophasis szechenyii. Notes: Missing haplotypes in the network are represented by black dots; circle sizes are proportional to the number of individuals sharing the same haplotypes (n); each mutation step is shown as a short line connecting neighbouring haplotypes; numbers of mutations between haplotypes are indicated near branches if greater than 1.
Figure 1 in Complete mitochondrial genome of Tetraophasis szechenyii Madarász, 1885 (Aves: Galliformes: Phasianidae), and its genetic variation as inferred from the mitochondrial DNA Control Region
Figure 1. Molecular phylogenetic tree derived from the complete DNA sequences of 12 mitochondrial protein-coding genes using Bayesian inference and maximum likelihood analyses. Notes:The numbers beside the nodes are Bayesian posterior probabilities (≥ 0.9 retained) and bootstrap proportions of maximum likelihood analyses calculated with 100 replicates (≥ 50% retained); Anas platyrhynchos and Alectura lathami were set as outgroups; *clades not supported by Bayesian inference.
Figure 3. Ninety-five per cent maximum parsimony networks obtained for the 12 in Mitochondrial DNA genetic variation and phylogeography of the recently described vole species Proedromys liangshanensis Liu, Sun, Zeng and Zhao, 2007 (Rodentia: Arvicolinae)
Figure 3. Ninety-five per cent maximum parsimony networks obtained for the 12 haplotypes in Proedromys liangshanensis. Circle sizes are proportional to haplotype frequencies.
Figure 2 in Mitochondrial DNA genetic variation and phylogeography of the recently described vole species Proedromys liangshanensis Liu, Sun, Zeng and Zhao, 2007 (Rodentia: Arvicolinae)
Figure 2. Bayesian inference tree using the TrN+I model depicting the relationship of Proedromys liangshanensis. The phylogenetic tree was rooted using Microtus kikuchii. Numbers represent node supports inferred from Bayesian posterior probabilities, neighbour joining and maximum parsimony bootstrap analyses.
Figure 4 in Mitochondrial DNA genetic variation and phylogeography of the recently described vole species Proedromys liangshanensis Liu, Sun, Zeng and Zhao, 2007 (Rodentia: Arvicolinae)
Figure 4. Expected (solid line) and observed (broken lines) mismatch distribution of Proedromys liangshanensis.
Figure 1 in Mitochondrial DNA genetic variation and phylogeography of the recently described vole species Proedromys liangshanensis Liu, Sun, Zeng and Zhao, 2007 (Rodentia: Arvicolinae)
Figure 1. Sampling localities of Proedromys liangshanensis. The filled circles represent the 12 haplotypes.
FIGURE 42 in <p><strong>Revision and phylogeny of the caddisfly subfamily </strong><strong>Protoptilinae (Trichoptera: Glossosomatidae) </strong><strong>inferred from adult morphology and mitochondrial DNA</strong></p>
FIGURE 42. Constraint trees of alternative hypotheses for Protoptilinae phylogeny used for Bayesian topological incongruence tests of SUBSET COMBO, SUBSET MORPH, and SUBSET COI datasets. A—(Tolhuaca (other Protoptilinae)): Tolhuaca is constrained to the outgroup and a monophyletic Protoptilinae includes the Asian clade. B—(Asian (other Protoptilinae)): The Asian clade is constrained to the outgroup and a monophyletic Protoptilinae includes Tolhuaca.
FIGURE 41 in <p><strong>Revision and phylogeny of the caddisfly subfamily </strong><strong>Protoptilinae (Trichoptera: Glossosomatidae) </strong><strong>inferred from adult morphology and mitochondrial DNA</strong></p>
FIGURE 41. Constraint trees of alternative hypotheses for Protoptilinae phylogeny used for Bayesian topological incongruence tests of TOTAL COMBO and TOTAL MORPH datasets. A—(Tolhuaca (other Protoptilinae)): Tolhuaca is constrained to the outgroup and a monophyletic Protoptilinae includes the Asian clade. B—(Asian (other Protoptilinae)): The Asian clade is constrained to the outgroup and a monophyletic Protoptilinae includes Tolhuaca.
FIGURE 40 in <p><strong>Revision and phylogeny of the caddisfly subfamily </strong><strong>Protoptilinae (Trichoptera: Glossosomatidae) </strong><strong>inferred from adult morphology and mitochondrial DNA</strong></p>
FIGURE 40. Phylogeny of protoptiline caddisflies based on Bayesian analysis of SUBSET COI dataset (25 taxa, 658 characters) under a GTR + I + Γ model. Posterior probability values are indicated above internodes.
FIGURE 39 in <p><strong>Revision and phylogeny of the caddisfly subfamily </strong><strong>Protoptilinae (Trichoptera: Glossosomatidae) </strong><strong>inferred from adult morphology and mitochondrial DNA</strong></p>
FIGURE 39. Phylogeny of protoptiline caddisflies based on Bayesian analysis of SUBSET MORPH dataset (25 taxa, 99 characters) under an Mk + Γ model. Posterior probability values are indicated above internodes.
FIGURE 37 in <p><strong>Revision and phylogeny of the caddisfly subfamily </strong><strong>Protoptilinae (Trichoptera: Glossosomatidae) </strong><strong>inferred from adult morphology and mitochondrial DNA</strong></p>
FIGURE 37. Phylogeny of protoptiline caddisflies based on Bayesian analysis of SUBSET COMBO dataset (25 taxa, 757 characters) under the models Mk + Γ (morphological data partition) and GTR + I + Γ (COI data partition). Posterior probability values are indicated above internodes.
FIGURE 38 in <p><strong>Revision and phylogeny of the caddisfly subfamily </strong><strong>Protoptilinae (Trichoptera: Glossosomatidae) </strong><strong>inferred from adult morphology and mitochondrial DNA</strong></p>
FIGURE 38. Phylogeny of protoptiline caddisflies based on parsimony analysis of SUBSET MORPH dataset (25 taxa, 99 characters). Strict consensus of 12 equally parsimonious trees (Length: 218; CI: 0.569; RI: 0.752; RC: 0.428). Bootstrap values ≥50% are indicated above internodes.
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International Brain Laboratory public data
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OpenNeuro
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