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501 results for “Phylogenetic tree”
text-fig. 1. Early cladistic hypotheses of the phylogeny of theropod dinosaurs, a, phylogenetic hypothesis of Thulbom (1984). B, the influential hypothesis published by Gauthier (1986). c, composite tree based on Weishampel et al. (1990). in The interrelationships and evolution of basal theropod dinosaurs
text-fig. 1. Early cladistic hypotheses of the phylogeny of theropod dinosaurs, a, phylogenetic hypothesis of Thulbom (1984). B, the influential hypothesis published by Gauthier (1986). c, composite tree based on Weishampel et al. (1990).
Manuscript data for "Iroki: automatic customization and visualization of phylogenetic trees"
<p>Manuscript data for "Iroki: automatic customization and visualization of phylogenetic trees"</p>
Fig. 4 Phylogenetic tree 1 in Evidence from morphological and genetic data confirms that Colossendeis tenera Hilton, 1943 (Arthropoda: Pycnogonida), does not belong to the Colossendeis megalonyx Hoek, 1881 complex
Fig. 4 Phylogenetic tree 1: Large tree: Phylogenetic tree based on maximum likelihood analysis of 545 bases of the CO1 gene of 44 specimens of Colossendeidae. ML bootstrap and Bayesian posterior probability support (if>50/0.5) are drawn on branches. Small tree:
Fig. 3 in Non-ultrametric phylogenetic trees shed new light on Neanderthal introgression
Fig. 3 Neanderthals (red square termed N) and ancient non-African humans (blue square termed H) branching from a common ancestor. Two scenarios are illustrated, each of them relying on a square with distinct molecular clock calibration. Our method suggests what follows: if the split took place 400,000 years ago, the introgression occurred about 40,000 years ago (A); if the split took place 600,000 years ago, the introgression occurred about 75,000 years ago (B)
FIGURE 1. Phylogenetic tree reconstructed from concatenated rpb2 and tef1 in Trichoderma changiae (Hypocreales), a new species isolated from a native orchid in Taiwan
FIGURE 1. Phylogenetic tree reconstructed from concatenated rpb2 and tef1 sequences using Maximum-likelihood analysis. The new species Trichoderma changiae is highlighted in bold blue. Bootstrap values above 50% from RAxML-HPC2 on XSEDE (left) and posterior probabilities above 0.95 from Bayesian analysis (right) are displayed at the nodes. The scale bar represents 0.05 substitutions per nucleotide position. Trichoderma vulgatum was used as the outgroup. "T" denotes type strains.
FIGURE 1. Phylogenetic tree for ITS r in The genus Rhodocollybia (Omphalotaceae, Basidiomycota) in the Republic of Korea
FIGURE 1. Phylogenetic tree for ITS r DNA of the genus Rhodocollybia. New species were indicated in bold.
Supplementary phylogenetic trees of Babesia bigemina based on partial sequences of both genes Rap-1a and gp45, with SH-aLRT support values (%), aBayes support, and ultrafast bootstrap support (%).
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Fig. 3 Most probable tree resulting from a in Phylogenetics and historical biogeography of Encyclia (Laeliinae: Orchidaceae) with an emphasis on the E. adenocarpos complex, a new species, and a preliminary species list for the genus
Fig. 3 Most probable tree resulting from a Bayesian Inference Analysis of Encyclia using a supermatrix of the regions ITS + rpl32-trnL, trnL-F, ycf1. Black dots above the lines represent Posterior Probabilities> 95%. Stars below the lines are bootstrap support> 70%.
FIGURE 1. Phylogenetic tree generated from a in A polyphasic approach to characterise two novel species of Phoma (Didymellaceae) from China
FIGURE 1. Phylogenetic tree generated from a maximum parsimony analysis based on the combined ITS, LSU, TUB and RPB2 sequence alignment. Values above the branches represent parsimony bootstrap support values (>50%). Thickened branches represent significant Bayesian posterior probability (≥95%). Novel sequences are printed in bold and the scale bar indicated 40 changes. The tree is rooted with Phoma paspali (CBS 560.81). An asterisk (*) indicates the ex-type strains.
FIGURE 1. Phylogenetic tree generated from the combined nrSSU, rpb1 and rpb2 in Ophiocordyceps highlandensis, a new entomopathogenic fungus from Yunnan, China
FIGURE 1. Phylogenetic tree generated from the combined nrSSU, rpb1 and rpb2 dataset using ML method. Bootstrap values (≥ 50%) derived from ML analyses and posterior probabilities from Bayesian inference (≥ 0.90) are shown above or beneath the branches at nodes. Ophiocordyceps highlandensis is highlighted in boldface. "Stroma 1" and "Stroma 2" are used to relate individual stromata of the same collection to their corresponding sequence data.
FIGURE 1. Phylogenetic tree generated from a in Dictyosporium wuyiense sp. nov. from Wuyi Mountain China
FIGURE 1. Phylogenetic tree generated from a maximum likelihood analysis based on the ITS1-5.8S-ITS2 rDNA sequence showing the relationships of D. wuyiense with cheiroid conidia to other members of Dictyosporiaceae. Bootstrap confidence values ≥ 70% are shown inside the branches. The tree was rooted to C. triseriale.
FIGURE 1 in South American Fomitiporia (Hymenochaetaceae, Basidiomycota) 'jump on' exotic living trees revealed by multi-gene phylogenetic analysis
FIGURE 1. One of the five 50% majority-rule consensus trees from Bayesian inference of combined ITS, nLSU and tef1-α sequences. BPP is shown above branches. Brown boxes shows two sister clades: Fomitiporia neotropica and Fomitiporia impercepta, clustered together (BPP=0.77). Exotic trees are noted in red and native trees in green. T=type, ARG=Argentina, GUF=French Guiana, BRA=Brasil.
FIGURE 2 in South American Fomitiporia (Hymenochaetaceae, Basidiomycota) 'jump on' exotic living trees revealed by multi-gene phylogenetic analysis
FIGURE 2. Fomitiporia impercepta (CORDC00005289): a. pore surface; b. tube layers. Fomitiporia neotropica (CORDC00005290): c. pore surface; d. tube layers.
Halamphora witkowskii alignment and phylogenetic tree
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FIGURE 4. Phylogenetic relationships among the Desmarestia species. A. The neighbor-joining tree was constructed using 2,000 in Desmarestia japonica subsp. angustifolia (Desmarestiales, Phaeophyceae), a new subspecies from Korea
FIGURE 4. Phylogenetic relationships among the Desmarestia species. A. The neighbor-joining tree was constructed using 2,000 bootstrap replicates.
FIGURE 1. Phylogenetic tree inferred from a in Dictyosporella hydei sp. nov., an asexual species from freshwater habitats in China
FIGURE 1. Phylogenetic tree inferred from a maximum likelihood analysis based on LSU sequences of 26 strains representing the species of Dictyosporella and their related species. The RAxML bootstrap support values (MLBS)> 75 and Bayesian posterior probabilities (BPP)> 0.90 are given on the nodes (MLBS/BPP). The tree is rooted to Dothidea berberidis (CBS 187.58). The type strains were marked with a "T".
FIGURE 2. Phylogenetic tree generated from a in Two new species of Barssia from China
FIGURE 2. Phylogenetic tree generated from a maximum likelihood analysis based on ITS+nrLSU combined sequences, showing the phylogenetic relationships of the new species. Tuber anniae and T. bellisporum are the outgroups. Likelihood bootstrap support values (≥ 70%) and Bayesian posterior probabilities values (≥ 0.95) are indicated above the nodes as BS/PP. Novel sequences are printed in bold.
FIGURE 1. Phylogenetic tree generated from a in Two new species of Barssia from China
FIGURE 1. Phylogenetic tree generated from a maximum likelihood analysis based on nrLSU sequences, showing the phylogenetic relationships of the new species. Tuber anniae and T. bellisporum are the outgroups. Likelihood bootstrap support values (≥ 70%) and Bayesian posterior probabilities values (≥ 0.95) are indicated above the nodes as BS/PP. Novel sequences are printed in bold.
FIGURE 3. Phylogenetic tree constructed using 54 in New findings of Coprinellus species (Psathyrellaceae, Agaricales) in China
FIGURE 3. Phylogenetic tree constructed using 54 ITS sequences, with three species of Psathyrella as outgroup for RAxML phylogram and MrBayes analyses. Maximum Likelihood support values (>90) and posterior probabilities (>0.90) are shown on each branch (ML/ PP).
FIGURE 1. Phylogenetic tree inferred from a in Junewangia aquatica (Junewangiaceae), a new species from freshwater habitats in China
FIGURE 1. Phylogenetic tree inferred from a maximum likelihood analysis based on a concatenated alignment of SSU, ITS and LSU sequences of 17 strains representing Junewangia species and other Acrodictys-like species. The RAxML bootstrap support values (MLBS) and Bayesian posterior probabilities (BPP) are given at the nodes (MLBS/BPP). The tree is rooted to Orbilia vinosa (CBS 917.72).
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Allen Brain Atlas
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.