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306 results for “data archive”
Data from: Data management, archiving and sharing for biologists and the role of research institutions in the technology-oriented age
Data are one of the primary outputs of science. Although certain sub-disciplines of biology have pioneered efforts to ensure their long-term preservation and facilitate collaborations, data continue to disappear, owing mostly to technological, regulatory and ideological hurdles. In this review, we describe the important steps towards proper data management and archiving, and provide a critical discussion on the importance of long term data conservation. We then illustrate the rise in data archiving through the Joint Data Archiving Policy and the Dryad Digital Repository. In particular, we discuss data integration and how the limited availability of large scale datasets can hinder new discoveries. Finally, we propose solutions to increase the rate of data preservation. For example, by generating mechanisms insuring proper data management and archiving, by providing training in data management, and by transforming the traditional role of research institutions and libraries as data generators towards managers and archivers.
Data for: Fossil samples archive functional diversity in marine ecosystems: An empirical test from a present-day coastal environment (Tyler and Kowalewski)
<p>Data associated with "Fossil samples archive functional diversity in marine ecosystems: An empirical test from a present-day coastal environment" by Carrie L. Tyler and Michal Kowalewski. Data include GPS coordinates for sample localities, variables quantifying multivariate space for all three assemblages, trait data for all species, and the associated R code (Functional Fidelity.zip). Abundance data is available in Tyler and Kowalewski (2023) <a href="https://doi.org/10.7717/peerj.15574">10.7717/peerj.15574</a> at <strong><a href="https://github.com/tylercl/Multi-Taxic-Fidelity">https://github.com/tylercl/Multi-Taxic-Fidelity</a> </strong>(DOI: 10.5281/zenodo.7871639).</p>
Simulation data archive: The influence of rotational discontinuities on the formation of reconnected structures at collisionless shocks - hybrid simulations
<p>Code and data used in preparation for submission to JGR: Space physics.</p>
Bus Open Data Service GTFS archive
<p>This dataset consists of an archive of timetables data originally published by the <a href="https://www.bus-data.dft.gov.uk/">Bus Open Data Service</a> in the General Transit Feed Specification (GTFS) standard. The information mainly reflects local public transport services, such as bus, tram, and ferry. It covers all regions in Great Britain.</p> <p>The archive is compiled by taking snapshots of the GTFS data published since 2021. From February 2023, regular snapshots have been taken every Saturday and Tuesday. The timetables data provides specific details, such as the number, day, date, route, and time.</p> <p>The time period coverage of this version is from 2021 to 2023, with consistency since February 2023.</p>
Open Language Archive Community (OLAC) Nightly Data Dump (XML) from 1 September 2017
<p>Open Language Archive Community (OLAC) Nightly Data Dump (XML) from 1 September 2017</p>
Figure 5 from: Remsen D, Knapp S, Georgiev T, Stoev P, Penev L (2012) From text to structured data: Converting a word-processed floristic checklist into Darwin Core Archive format. PhytoKeys 9: 1-13. https://doi.org/10.3897/phytokeys.9.2770
Figure 5 - Example of a scientific name entry.
Figure 1 from: Remsen D, Knapp S, Georgiev T, Stoev P, Penev L (2012) From text to structured data: Converting a word-processed floristic checklist into Darwin Core Archive format. PhytoKeys 9: 1-13. https://doi.org/10.3897/phytokeys.9.2770
Figure 1 - A typical species record from the checklist.
Figure 4 from: Remsen D, Knapp S, Georgiev T, Stoev P, Penev L (2012) From text to structured data: Converting a word-processed floristic checklist into Darwin Core Archive format. PhytoKeys 9: 1-13. https://doi.org/10.3897/phytokeys.9.2770
Figure 4 - Data correctly aligned with columns.
Figure 6 from: Remsen D, Knapp S, Georgiev T, Stoev P, Penev L (2012) From text to structured data: Converting a word-processed floristic checklist into Darwin Core Archive format. PhytoKeys 9: 1-13. https://doi.org/10.3897/phytokeys.9.2770
Figure 6 - Synonym records (highlighted) added and linked.
Figure 2 from: Remsen D, Knapp S, Georgiev T, Stoev P, Penev L (2012) From text to structured data: Converting a word-processed floristic checklist into Darwin Core Archive format. PhytoKeys 9: 1-13. https://doi.org/10.3897/phytokeys.9.2770
Figure 2 - Taxon records imported into a database.
Strong intensification of the Arabian Sea oxygen minimum zone in response to Arabian Gulf warming. Data archive.
<p>This archive contains netCDF files corresponding to datasets used in the Geophysical Research Letters paper entitled<br> "Strong intensification of the Arabian Sea oxygen minimum zone in response to Arabian Gulf warming" by Zouhair Lachkar, Marina Levy and Shafer Smith.</p> <p>Archives are presented for the control simulation and perturbation simulations (AG^1C, AG^2C, AG^2C*, AG^4C and AG^Dry-Gulf) <br> corresponding to data sources used to produce figures in the main manuscript as well as figures presented in the Supporting Information (simulations corresponding to the sensitivity of Gulf warming to winter warming and increased salinity as well as Red Sea warming experiments). </p> <p>The data is in standard netCDF file format, which is readily readable using standard netCDF tools. Variables, dimensions and units are described in the netcdfs metadata.</p>
Data archive for the 2021 Ms 6.0 Luxian earthquake
<p>Data archive for the 2021 Ms 6.0 Luxian earthquake</p>
FAOSTAT AgLU data Archive (unused)
<p>This repository contains data files needed to run the gcamdata-faostat (v1.0) package. All the data are publicly available from FAOSTAT and they are downloaded from <a href="https://www.fao.org/faostat/en/#data">FAOSTAT</a> in October 2022. This repo serves as an archive of the source data as FAOSTAT continues updating the data. These data are used in gcamdata-faostat (v1.0) to generate data used in the <em>aglu/FAO</em> folder in <em>gcamdata </em>and the archive ensures the processing is reproducible.</p> <p> </p>
Data from: Data management, archiving and sharing for biologists and the role of research institutions in the technology-oriented age
Open the record for dataset details and reuse information.
Data from: Using archived television video footage to quantify phenology responses to climate change
Open the record for dataset details and reuse information.
Data from: Selective depletion of rRNA enables whole transcriptome profiling of archival fixed tissue
Open the record for dataset details and reuse information.
Gene profiling using archival formalin-fixed paraffin-embedded breast cancer specimens can generate informative microarray data: A comparison with matched fresh fine needle aspiration biopsy samples (
GEO Series GSE23385. Homo sapiens. 25 samples. Type: Expression profiling by array.
Raw data for: Identifying archived insect bulk samples using DNA metabarcoding: A case study using the long-term Rothamsted Insect Survey
<p>These are the raw files from the Illumina MiSeq for the 12 libraries sequenced.</p>
Urban-PLUMBER: Flux tower data archive - 16 of the 20 sites from "Harmonized gap-filled dataset from 20 urban flux tower sites"
<p>Note: This dataset has been superseded by the <a href="http:// https://doi.org/10.5281/zenodo.6590886">full open access version</a> which includes all 20 sites described in the manuscript</p> <blockquote> <p>"Harmonized gap-filled dataset from 20 urban flux tower sites".</p> </blockquote> <p>See: <a href="https://doi.org/10.5281/zenodo.6590886">https://doi.org/10.5281/zenodo.6590886</a></p>
ROSAT All-Sky Survey Archival Data
This database table contains the list German ROSAT All-Sky Survey observations which were obtained during the ROSAT All-Sky Survey phase (1990 July 30 to 1991 Jan 25) and which have become available to the public. These data were obtained in scanning mode and therefore an individual dataset covers a much larger area of the sky than do pointed moded observations. In addition all these data were obtained with PSPC-C, while all pointed mode observations after the end of the All-Sky Survey were obtained with PSPC-B. For each observation listed in this database table, the instrument used, processing site, and coordinates of the field center are given, as well as the ROSAT observation request number (ROR), actual exposure time, date the observation took place, and more. For details about the ROSAT instruments, consult the ROSAT Mission Description (NASA Research Announcement for ROSAT, Appendix F and its addendum) and the ROSAT GSFC GOF website at <a href="http://heasarc.gsfc.nasa.gov/docs/rosat/rosgof.html">http://heasarc.gsfc.nasa.gov/docs/rosat/rosgof.html</a> for more information. For more information about the ROSAT All Sky Survey, see the ROSAT All Sky Survey page at <a href="http://www.xray.mpe.mpg.de/cgi-bin/rosat/rosat-survey">http://www.xray.mpe.mpg.de/cgi-bin/rosat/rosat-survey</a>. This database table was created at the HEASARC in March 2002, based on information provided by Max-Planck-Institut fuer extraterrestrische Physik at <a href="http://wave.xray.mpe.mpg.de/">http://wave.xray.mpe.mpg.de/</a>. This is a service provided by NASA HEASARC .
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.