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Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
522
datasets available to search
ShareScore release 0.9.0
Dataset results
522 results for “gene regulatory network”
Cell-type specific meQTL extends melanoma GWAS annotation beyond eQTL and identifies a melanocyte gene regulatory network
GEO Series GSE166069. Homo sapiens. 106 samples. Type: Expression profiling by array.
Dynamic gene regulatory networks of human myeloid differentiation [ATAC-seq]
GEO Series GSE79019. Homo sapiens. 96 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Landscape of Monoallelic DNA Accessibility and Gene Regulatory Networks during Reprogramming to Naive Pluripotency and X Chromosome Reactivation [allele-specific analysis]
GEO Series GSE184987. Mus musculus. 47 samples. Type: Expression profiling by high throughput sequencing.
An atlas of gene regulatory networks for T memory cells in youth and old age [RNA-seq]
GEO Series GSE228666. Mus musculus. 9 samples. Type: Expression profiling by high throughput sequencing.
OCEAN-C: mapping hubs of open chromatin interactions across the genome reveals gene regulatory networks
GEO Series GSE100832. Homo sapiens. 8 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other.
A gene regulatory network involving the class II ERF transcriptional repressors in leaf senescence of Arabidopsis thaliana
GEO Series GSE41053. Arabidopsis thaliana. 4 samples. Type: Expression profiling by array.
Histone lactylation couples cellular metabolism with the activation of developmental gene regulatory networks
GEO Series GSE228343. Gallus gallus. 25 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Whole-transcriptome analysis and construction of vernalization-related ceRNA-miRNA-target gene regulatory network in Chinese cabbage (Brassica campestris L. ssp. pekinensis) [seed mRNA]
GEO Series GSE171707. Brassica rapa subsp. pekinensis. 6 samples. Type: Expression profiling by high throughput sequencing.
SCENIC+: identification of enhancers and gene regulatory networks using single-cell multiomics (Cortex)
GEO Series GSE210747. Mus musculus. 10 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Deciphering H3K4me3 Broad Domains Associated With Gene Regulatory Networks and Conserved Epigenomic Landscapes in the Human Brain
GEO Series GSE71238. Homo sapiens. 18 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
Compound mouse mutants of bZIP transcription factors MafG and MafK reveal a regulatory network of non-crystallin genes linled to cataract
GEO Series GSE65500. Mus musculus. 4 samples. Type: Expression profiling by array.
Gain of gene regulatory network interconnectivity at the origin of vertebrates [ATAC-seq]
GEO Series GSE148781. Branchiostoma lanceolatum; Danio rerio. 24 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
An atlas of gene regulatory networks for T memory cells in youth and old age
GEO Series GSE228668. Mus musculus. 33 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Functional signaling and gene regulatory networks between the oocyte and the surrounding cumulus cells
GEO Series GSE99678. Bos taurus. 48 samples. Type: Expression profiling by high throughput sequencing.
Identification of microRNA-dependent gene regulatory networks driving human pancreatic endocrine cell differentiation [RNA-Seq III]
GEO Series GSE135197. Homo sapiens. 14 samples. Type: Expression profiling by high throughput sequencing.
Gene regulatory networks controlling vertebrate retinal regeneration
<p><strong>For the remaining split tarballs 2,3,5-9, please see below for each:</strong></p> <p>https://westus.dl.azure.dnanex.us/F/D/XPFkPpYk76kVy7qqvGVx6VjF4KfzGYG4GpvZj3x0/NorteDame_data2.tar.gz</p> <p>https://westus.dl.azure.dnanex.us/F/D/jP1YK0vF96JVG7Bf2F8B9BZ50QY45zQ4pV02XPg6/NorteDame_data3.tar.gz</p> <p>https://westus.dl.azure.dnanex.us/F/D/JXg3Y4BgjFz9q87Kpvf5J7V2J6B6qzKZYfFJk3vK/NorteDame_data5.tar.gz</p> <p>https://westus.dl.azure.dnanex.us/F/D/7Vy4fbqy20BXYF4Gj8zk3kp2321q0xBqbgqf9V0g/NorteDame_data6.tar.gz</p> <p>https://westus.dl.azure.dnanex.us/F/D/KZ0YXp405XZgv023G6pBzgPjYx8K9Q743XK81PG6/NorteDame_data7.tar.gz</p> <p>https://westus.dl.azure.dnanex.us/F/D/xK9VBPYxPF1VbpzFfpPy8zyg76Bgb2xYKfFpqg5p/NorteDame_data8.tar.gz</p> <p>https://westus.dl.azure.dnanex.us/F/D/ZYp9v7712Zvp9jZp7k746G6VPqkJ09PvPg3ZZJ69/NorteDame_data9.tar.gz</p> <p> </p> <p><strong>See the following visualizations to explore the findings:</strong></p> <p> *<a href="https://viz.stjude.cloud/hyde-lab/visualization/mouse-retinal-development-single-cell-rnaseq-analysis~70">Mouse Retinal Development Single Cell RNAseq analysis</a></p> <p> * <a href="https://viz.stjude.cloud/hyde-lab/visualization/retinal-regeneration-single-cell-of-mouse-retina-following-nmda-treatment~74">Retinal Regeneration Single Cell of Mouse retina following NMDA treatment</a></p> <p> * <a href="https://viz.stjude.cloud/hyde-lab/visualization/retinal-regeneration-single-cell-of-mouse-trajectory-of-muller-glia-in-response-to-nmda-treatment~76">Retinal Regeneration Single Cell of Mouse Trajectory of Muller glia in response to NMDA treatment</a></p> <p> * <a href="https://viz.stjude.cloud/hyde-lab/visualization/retinal-regeneration-single-cell-of-mouse-retina-following-light-damage~75">Retinal Regeneration Single Cell of Mouse Retina following light damage</a></p> <p> * <a href="https://viz.stjude.cloud/hyde-lab/visualization/retinal-regeneration-single-cell-of-mouse-trajectory-of-muller-glia-in-response-to-light-damage~77">Retinal Regeneration Single Cell of Mouse Trajectory of Muller glia in response to light damage</a></p> <p> * <a href="https://viz.stjude.cloud/hyde-lab/visualization/mouse-and-zebrafish-retinal-development-rnaseq-with-fpkm~51">Mouse and Zebrafish retinal development RNAseq with FPKM</a></p> <p> * <a href="https://viz.stjude.cloud/hyde-lab/visualization/retinal-regeneration-single-cell-of-chick-retina-following-nmdagrowth-factor-gf-insulinfgf-treatment~73">Retinal Regeneration Single cell of Chick Retina following NMDA/growth factor (GF, insulin+FGF) treatment</a></p> <p> * <a href="https://viz.stjude.cloud/colleen-reilly/visualization/retinal-regeneration-single-cell-of-zebrafish-retina-development~78">Retinal Regeneration Single Cell of Zebrafish Retina development</a></p> <p> * <a href="https://viz.stjude.cloud/hyde-lab/visualization/retinal-regeneration-single-cell-of-chick-trajectory-of-muller-glia-in-response-to-nmdagf-treatment~83">Retinal Regeneration Single Cell of Chick Trajectory of Muller glia in response to NMDA/GF treatment</a></p> <p> * <a href="https://viz.stjude.cloud/hyde-lab/visualization/retinal-regeneration-single-cell-of-zebrafish-retina-following-light-damage~80">Retinal Regeneration Single Cell of Zebrafish Retina following light damage</a></p> <p> * <a href="https://viz.stjude.cloud/hyde-lab/visualization/retinal-regeneration-single-cell-of-zebrafish-retina-following-nmda-treatment~79">Retinal Regeneration Single Cell of Zebrafish Retina following NMDA treatment</a></p> <p> * <a href="https://viz.stjude.cloud/colleen-reilly/visualization/retinal-regeneration-single-cell-of-zebrafish-retina-following-tnf-and-the-gamma-secretase-inhibitor-ro4929097-tr-treatment~81">Retinal Regeneration Single Cell of Zebrafish Retina following TNFɑ and the gamma secretase inhibitor RO4929097 (T+R) treatment</a></p> <p> * <a href="https://viz.stjude.cloud/hyde-lab/visualization/retinal-regeneration-single-cell-of-zebrafish-trajectory-of-muller-glia-in-response-to-nmda-light-damage-and-tr-treatments~82">Retinal Regeneration Single Cell of Zebrafish Trajectory of Muller glia in response to NMDA, light damage and T+R treatments</a></p> <p> </p>
A validated gene regulatory network and GWAS identifies early regulators of T-cell associated diseases
GEO Series GSE60680. Homo sapiens. 151 samples. Type: Expression profiling by array.
Unraveling the Gene Regulatory Networks of the Global Regulators VeA and LaeA in Aspergillus nidulans [ChIP-seq]
GEO Series GSE217819. Aspergillus nidulans. 12 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
A spatio-temporally constrained gene regulatory network directed by PBX1/2 acquires limb patterning specificity via HAND2 [ChIP-seq]
GEO Series GSE197856. Mus musculus. 16 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Landscape of Monoallelic DNA Accessibility and Gene Regulatory Networks during Reprogramming to Naive Pluripotency and X Chromosome Reactivation [10X]
GEO Series GSE153845. Mus musculus. 2 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.