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1,582 results for “manuscript”
WRF-Chem output supporting manuscript "Sources of Black Carbon Deposition to the Himalayan Glaciers in Current and Future Climates"
<p>Selected output from WRF-Chem v3.6.1 on black carbon deposition, rainfall, and snowfall over Southeast Asia. These files were used to prepare the figures and tables in the manuscript "Sources of Black Carbon Deposition to the Himalayan Glaciers in Current and Future Climates" by these authors. Files are in NetCDF format and contain metadata describing their contents. The naming convention is:</p> <p>YYYY_MM_EXT_daily_12km_dustfix.nc</p> <p>where YYYY_MM is the simulated year and month and the extensions are:</p> <p>NFC - No Further Control emission scenario</p> <p>MIT - Mitigation emission scenario</p> <p>EN - Simulated El Nino year</p> <p>LN - Simulated La Nina year</p> <p> </p>
Data supporting the manuscript entitled: 'Intermittent soil water stress history favors microbial traits that better mitigate wheat biomass losses during subsequent water stress.'
<p>Data living in this data repository supports the scientific article entitled: Intermittent soil water stress history favors microbial traits that better mitigate wheat biomass losses during subsequent water stress.</p> <p> </p> <p> </p> <p> </p>
Data and code to accompany sugar kelp DEB thermal response manuscript
<p>Data and R code to accompany the manuscript "Improving growth models of cultivated sugar kelp (<em>Saccharina latissima</em>) by accounting for intraspecific variation in thermal tolerance" (Krasnow et al., 2024), published in the Journal of the World Aquaculture Society.</p> <p>Some material was originally created by Celeste Venolia in March 2018-December 2019 for <a href="https://doi.org/10.1016/j.ecolmodel.2020.109151">Venolia et al. (2020)</a>.<br><br></p> <ul> <li>cold_validation.R contains the code to validate DEB kelp model against data from Trømso, Norway</li> <li>venolia_validation.R contains the code to validate the model against the data from Rhode Island, USA, reproducing the analysis from the original paper and producing new estimates with the newly-estimated temperature parameters</li> <li>SolveR_R.R includes the function that is used to solve for the specific growth rate (r)</li> <li>KelpDEB_model.R includes the deSolve-structured function used to run the model</li> </ul> <p>Please use the most recent version (3.1) so that all data/code needed to run the analyses are present.</p>
The CWR richness dataset of manuscript "ENHANCING IN SITU CONSERVATION OF CROP WILD RELATIVES FOR FOOD AND AGRICULTURE IN LITHUANIA"
<p>The CWR National Inventory database has been created by combining data from the Database of EU Habitat Mapping in Lithuania (BIGIS), the Herbarium Database of the Nature Research Centre (BILAS), the Lithuanian Vegetation Database (EU-LT-001), and the Global Biodiversity Information Facility (GBIF). It was used to calculate CWR richness in 4 by 4 kilometres grid cell. The dataset contains three GIS files (.shp) - Boundaries of Lithuania, CWR richness in grid cells and 45 potential genetic reserve sites.</p>
STATA code to reproduce results in the manuscript "Low birth weight risk during COVID-19: Evidence from a nationwide study in India"
<p>This STATA code will reproduce results in the manuscript "Low birth weight risk during COVID-19: Evidence from a nationwide study in India" The users will have to register and access the data from www.dhsprogram.com to run the analysis code. </p>
Source Data for main text and supplemental figures for manuscript "Community assessment of methods to deconvolve cellular composition from bulk gene expression"
<p>Source Data for main text and supplemental figures for manuscript "Community assessment of methods to deconvolve cellular composition from bulk gene expression"</p>
Source data files for manuscript "Closed Magnetic Topology in the Venusian Magnetotail and Ion Escape at Venus"
<p>The zip file contains source data files for all figures in the manuscript "Closed Magnetic Topology in the Venusian Magnetotail and Ion Escape at Venus" published in Nature Communications. DOI: 10.1038/s41467-024-50480-0.</p>
Raw data Manuscript Wouters et al BBA 2023
Open the record for dataset details and reuse information.
Supporting Information Proteins Manuscript (Irfan Khawar)
<p><span>This file is basically a Supporting information (SI) of my research paper. It consists of all the tables of the datasets for Chicken protein-water, Fish protein-water, Combined Muscle protein-water, and Bovine serum albumin-water partitioning. It also consists of the R codes used to generate figures and results. Supporting information is available free of charge (section 3 in SI).</span></p>
Supplemental file for the manuscript "Utility of salivary cortisol and cortisone in the diagnostics of adrenal insufficiency"
<p>Supplemental file for the manuscript "Utility of salivary cortisol and cortisone in the diagnostics of adrenal insufficiency"</p>
Figure 3 in "Poissons de Concarneau", an unpublished manuscript on ichthyological observations in southern Brittany, France, in 1878-1886 by Charles Robin, Georges Pouchet, Laurent Chabry, Alfred Giard and Jules Bonnier
Figure 3. – Example of the manuscript of Robin et al. (1886), page 244 "Poissons de Concarneau" (Fishes of Concarneau), and page 226: "Squales apportés au marché de Concarneau" (Sharks landed at the fish market of Concarneau).
Figure 2 in "Poissons de Concarneau", an unpublished manuscript on ichthyological observations in southern Brittany, France, in 1878-1886 by Charles Robin, Georges Pouchet, Laurent Chabry, Alfred Giard and Jules Bonnier
Figure 2. – The identified authors of "Poissons de Concarneau" (1878-1886). A: Charles Robin (1821-1885); B: Georges Pouchet (1833- 1894); C: Laurent Chabry (1855-1893); D: Alfred Giard (1846-1908); E: Jules Bonnier (1859-1908).
Figure 1 in "Poissons de Concarneau", an unpublished manuscript on ichthyological observations in southern Brittany, France, in 1878-1886 by Charles Robin, Georges Pouchet, Laurent Chabry, Alfred Giard and Jules Bonnier
Figure 1. – Map of the Bay of La Forêt and the Glénan Islands in Southern Brittany (France) with the location of the Marine Station of Concarneau.
Dataset for the manuscript: "Elevated-Mn ChemCam Targets Illuminating Mn Redox Cycling and Diagenesis in the Bradbury Rise, Gale Crater, Mars"
<p><span>The dataset for the manuscript titled, “Elevated-Mn ChemCam Targets Illuminating Mn Redox Cycling and Diagenesis in the Bradbury Rise, Gale Crater, Mars” consists of a single CSV file. This CSV contains 1,539 rows, with one ChemCam observation point per row. The observation points in this file are from the ChemCam rock targets between martian solar days (sols) 1 and 600 of the MSL <em>Curiosity</em> rover mission that have at least one observation point with > 0.2 wt% MnO. Metadata and compositional data are provided for each row. The metadata includes the LIBS spectrum filename; the name of the target to which the observation point belongs; the class into which we grouped the target; the spacecraft clock value (timestamp) for the observation point; the sol on which the observation was taken; and the ChemCam sequence identifier; the observation point number within the sequence; the ChemCam-to-target distance (in meters); the laser power used for the LIBS measurements; the spectrum totals; and a binary column indicating whether the observation point has > 0.2 wt% MnO. The compositional data includes the oxide chemistry (oxide wt.%), RMSEP accuracy, and shot-to-shot standard deviation, for the major oxides SiO2, TiO2, Al2O3, FeOT, MgO, CaO, Na2O, K2O, as well as for MnO; the sum of oxides for each observation point is also provided.</span></p>
Draft version of poposed images and plotting code of manuscript: Stray light correction and enhancement of nocturnal low-light image of early-morning-orbiting Fengyun-3E satellite
<p>This documentation provides a detailed description of the folder structure and image contents uploaded to the website. It aims to help users understand the purpose and organization of the files. The corresponding manuscript is titled,<strong><em> Stray light correction and enhancement of nocturnal low-light image of early-morning-orbiting Fengyun-3E satellite</em></strong>.</p>
Data from the manuscript: "Few-femtosecond electron transfer dynamics in photoionized donor-pi-acceptor molecules"
Open the record for dataset details and reuse information.
Data and results for manuscript "Imaging groundwater infiltration dynamics in karst vadose zone with long-term ERT monitoring"
<p>This data set contains raw and inverted data from an Electrical Resistivity Tomography (ERT) monitoring experiment conducted over a period of three years at the Rochefort Cave Laboratory (RCL) site in South Belgium. It highlights variable hydrodynamics in the karst vadose zone of Lorette Cave. More conventional hydrological measurements (drip discharge monitoring, soil moisture and water conductivity data sets) are also included in the package, which aims at provide a thorough understanding of the groundwater infiltration. Seasonal changes affect all the imaged areas leading to increases in resistivity in spring/summer attributed to enhanced evapotranspiration, whereas winter is characterised by a general decrease in resistivity associated with a groundwater recharge of the vadose zone. This study provides detailed images of the sources of drip discharge spots traditionally monitored in caves and aims to support modelling approaches of karst hydrological processes.</p>
Copepod diapause duration estimation code for manuscript: Lipid load triggers migration to diapause in Arctic Calanus copepods - insights from underwater imaging
<p>This is a script and data upload by Frederic Maps (Université Laval) which creates figure 10 as well as other exploratory plots for publication Schmid, Maps, Fortier 2018: Lipid load triggers migration to diapause in Arctic Calanus copepods - insights from underwater imaging, to be published in the journal of plankton research (JPR).</p>
Data File for Manuscript "Comprehensive Molecular Simulation on Triple Negative Breast Cancer Transcriptomics Features of mir-145 and 3' UTR of ARF6 mRNA"
<p>This is a data file for the manuscript "Comprehensive Molecular Simulation on Triple Negative Breast Cancer Transcriptomics Features of mir-145 and 3’ UTR of ARF6 mRNA". It comprises of molecular docking (AUTODOCK VINA 4) and dynamics data (NAMD and VMD).</p>
Supplementary files for the manuscript "Assembly of Long Error-Prone Reads Using Repeat Graphs"
<p>Supplementary files for the manuscript "Assembly of Long Error-Prone Reads Using Repeat Graphs"</p> <p> </p> <p>Contents<br> ---------</p> <p>* `human_assemblues` - Flye assemblies of the human ONT sequencing data + QUAST benchmarking<br> of Flye, Canu and MaSuRCA assemblies. Scripts for assembly graph analysis are also included.</p> <p>* `nctc_assemblis` - Flye assemblies of the NCTC 21 bacterial dataset.</p> <p>* `yeast_assemblies` - working directories Flye, Canu, Falcon, Hinge and Miniasm assemblies of <br> yeast PB and ONT datasets + final assemblies + quast report. Some large files <br> (such as read alignments) were deleted.</p> <p>* `worm_assemblies` - working directories Flye, Canu, Falcon, Hinge and Miniasm assemblies of <br> the c. elegans dataset + final assemblies + quast report. Some large files <br> (such as read alignments) were deleted. `tandem_misassemblies` directory contain<br> the detailed analysis of nine tandem misassemblies. We recommend "gepard" dot-plotter for visualization.</p> <p>* `metagenome_assemblies` - Flye and Canu assemblies of a PacBio mock metagenome dataset.<br> In addition to metagenome assemblies, each bacteria was reassembled separately to<br> estimate the rate of divergence between the target genomes and the available references.</p> <p>* `simulated_data` - two assemblies of the simulated data illustrating Figure 1 (from Appendix I),<br> as well as simulated unbridged repeats benchmark.</p> <p><br> Software versions and parameters<br> --------------------------------</p> <p>* Flye - 2.3.5 (commit 20afeda)<br> * Canu - 1.7.1 (commit dfa60b8)<br> * Falcon - 0.3.0 (FALCON-Integrate commit 7498ef9)<br> * HINGE - 0.5.0 (commit 79fdf66)<br> * Miniasm - 0.2-r168-dirty (commit 40ec280) / Minimap2 2.8-r711-dirty (commit 8fc5f8d)<br> * Quast - 5.0.0 (commit de6973bb)</p> <p>Flye and Canu were run with the default parameters. The config files / scripts for<br> Falcon, HINGE and Miniasm could be found in the 'asm_config' archive folder.</p> <p>The HUMAN (but not the HUMAN+) assembly was generated with the earlier <br> Flye version 2.3.2 (released on Feb 20 2018) to provide a fair comparison <br> with the Canu and MaSuRCA assemblies (which were not updated since the release of Flye 2.3.2).<br> We note that the HUMAN assembly using the latest Flye version 2.3.5 has <br> NGA50 = 7.3 Mb and improves over the Flye 2.3.2 assembly (NGA50 = 6.3Mb). <br> HUMAN+ was assembled using the latest Flye and Canu versions (as of September 2018).</p> <p>The code for unbridged repeat resolution is currently available <br> in a separate 'flye-trestle' branch (commit 6100d32)</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.