Find research datasets worth reusing

opencc-by-4.0Jul 2021View details →

Traces of oVOCs from PTR3 during SALTENA, May 2018

Traces of oVOCs from PTR3 during SALTENA, May 2018, interpolated to half hours. The concentrations are given as ppt, and it is the minimal concentration! The concentrations for non-oxidized compounds often require individual calibrations, so I excluded them. If you need any traces of non-oxidized compounds, or if you want to use the data in a publication, please talk to me: Wiebke.Scholz@student.uibk.ac.at A more detailed description can be found in the README.txt

opencc-by-4.0Jul 2021View details →

XRP Ledger Consensus Protocol Traces Dataset

This artifact contains a dataset of log traces produced by the XRP Ledger Consensus Protocol at the debug level (DBG). Each file represents a log traces consisting of the logs produced during one round of the Consensus Protocol.

opencc-by-4.0Aug 2021View details →

Sanger sequencing traces of specific exons of the Sm.TRPM_PZQ gene from schistosome field samples

Praziquantel (PZQ) is the only drug available to treat schistosomiasis, which is caused by schistosome blood flukes. In Schistosoma mansononi, the transient receptor potential (TRP) channel Sm.TRPMPZQ is strongly suspected to be the target of PZQ. Our <a href="https://doi.org/10.1101/2021.06.09.447779">genetic analysis of S. mansoni response to PZQ</a> revealed a QTL on its chromosome 3 which contains the Sm.TRPMPZQ gene, strongly suggesting that Sm.TRPMPZQ could be responsible for PZQ resistance. Therefore, understanding the natural variation in this gene and identifying potential resistance alleles will be a valuable tool for monitoring mass treatment programs aimed at schistosomiasis elimination. We investigated our schistosome collection to examine mutations present in Sm.TRPMPZQ in natural schistosome populations. We analyzed exome sequencing data from 259 miracidia, cercariae or adult parasites from 3 African countries (Senegal, Niger, Tanzania), the Middle East (Oman) and South America (Brazil). We were able to sequence 36/41 exons of Sm.TRPMPZQ from 122/259 parasites on average (s.e. = 18.65). We identified several mutations in critical areas of the channel. However, these mutations were supported by a limited number of reads only and required confirmation by Sanger sequencing. The present dataset corresponds to the sequencing effort done on specific exons which carried the mutations to be confirmed. We generated PCR products which were sequenced on on ABI sequencer using Eurofins Genomics services. The SCF files were then analyzed using PolyPhred (see manuscript for details about PCR conditions and data analysis). The trace files are available in the traces folder. Each filename carries a barcode which corresponds to a combination of sample, exon, and primer. All the combinations and corresponding barcodes are listed in the barcode_list.tsv file. Table header details of the barcode list: <ul> <li>Sample: the name of sample. The sample coding is as follows: species.country_patientID. BR: Brazil, SN: Senegal, NE: Niger, TZ: Tanzania, OM: Oman.</li> <li>Exon: the exon targeted. The exon number corresponds to the exon number of isoform 5 and not the exon number of the gene.</li> <li>Barcode: the barcode provided by Eurofins Genomics.</li> <li>Primer: the primer used for sequencing. F: forward, R: reverse.</li> </ul>

opencc-by-4.0Aug 2019View details →

Text-fig. 2. Soft-tissue imprints and traces of bioerosion on Middle Ordovician cephalopods from Estonia. a: GIT 819-1, Tragoceras falcatum (SCHLOTHEIM, 1820), drag bands; b: GIT 819-1, T. falcatum, pseudosutures; c: GIT 819-2, Estonioceras sp., drag bands; d: GIT 819-3, cf. Anthoceras vaginatum (SCHLOTHEIM, 1820), drag bands; e: GIT 819-4, cf. Orthoceras regulare SCHLOTHEIM, 1820, drag bands; f: Pits on the body chamber of GIT 819-1, T. falcatum. Specimens oriented with aperture downwards. Scale bars 1 mm. in Conch Structures, Soft-Tissue Imprints And Taphonomy Of The Middle Ordovician Cephalopod Tragoceras Falcatum From Estonia

Text-fig. 2. Soft-tissue imprints and traces of bioerosion on Middle Ordovician cephalopods from Estonia. a: GIT 819-1, Tragoceras falcatum (SCHLOTHEIM, 1820), drag bands; b: GIT 819-1, T. falcatum, pseudosutures; c: GIT 819-2, Estonioceras sp., drag bands; d: GIT 819-3, cf. Anthoceras vaginatum (SCHLOTHEIM, 1820), drag bands; e: GIT 819-4, cf. Orthoceras regulare SCHLOTHEIM, 1820, drag bands; f: Pits on the body chamber of GIT 819-1, T. falcatum. Specimens oriented with aperture downwards. Scale bars 1 mm.

opencc-by-4.0Dec 2020View details →

Text-fig. 5. Tumidopteris astra sp. nov., holotype GIN 4851/343h, morphology of sori. a, b: line tracing of the sorus; c: an isolated spore preserved on the sporangium. Scale 500 Μm (a, b), 20 Μm (c). in A New Species Of The Genus Tumidopteris Naugolnykh From The Permian Of The Pechora Cis-Urals, Russia

Text-fig. 5. Tumidopteris astra sp. nov., holotype GIN 4851/343h, morphology of sori. a, b: line tracing of the sorus; c: an isolated spore preserved on the sporangium. Scale 500 Μm (a, b), 20 Μm (c).

Text-fig. 18. Carnivore chewing traces on medial trochlear ridge of humerus 98-594-A-Př (2), for the metrics of this bone see Table 12. in Consumption Of Canid Meat At The Gravettian Předmostí Site, The Czech Republic

Text-fig. 18. Carnivore chewing traces on medial trochlear ridge of humerus 98-594-A-Př (2), for the metrics of this bone see Table 12.

Text-fig. 15. Oblique cut marks on the mid-shaft of tibia 98-596-B (1) Př15/5 83, root traces visible on the shaft, for the metrics of this bone see Table 12. in Consumption Of Canid Meat At The Gravettian Předmostí Site, The Czech Republic

Text-fig. 15. Oblique cut marks on the mid-shaft of tibia 98-596-B (1) Př15/5 83, root traces visible on the shaft, for the metrics of this bone see Table 12.

Text-fig. 12. "Repetitive" marks on humerus P12404 Předmostí 1928, root traces visible on the shaft, for the metrics of this bone see Table 12. in Consumption Of Canid Meat At The Gravettian Předmostí Site, The Czech Republic

Text-fig. 12. "Repetitive" marks on humerus P12404 Předmostí 1928, root traces visible on the shaft, for the metrics of this bone see Table 12.

Text-fig. 3. Schematic position of the human modifications (cut marks, impact marks, ochre traces, inserted bones) recognised on the canid remains from Předmostí, indicated on a wolf skeleton; the frequencies of the modifications are not shown. Modified after © 2003 ArcheoZoo.org / Michel Coutureau (Inrap). in Consumption Of Canid Meat At The Gravettian Předmostí Site, The Czech Republic

Text-fig. 3. Schematic position of the human modifications (cut marks, impact marks, ochre traces, inserted bones) recognised on the canid remains from Předmostí, indicated on a wolf skeleton; the frequencies of the modifications are not shown. Modified after © 2003 ArcheoZoo.org / Michel Coutureau (Inrap).

opencc-by-4.0Dec 2011View details →

Fig. 29. Character trace for Character 4 in Basicranial Morphology And Relationships Of Antillean Heptaxodontidae (Rodentia, Ctenohystrica, Caviomorpha)

Fig. 29. Character trace for Character 4: Absence/presence of pessulus traversing stapedial obturator foramen (0, white; 1, black; vertical striping, equivocality). The wide distribution of the pessulus indicates that it is probably a primitive feature in ctenohystricans. It is highly likely that there are many other occurrences of pessuli in taxa not investigated here. ''Echimyidae'' here refers to Proechimys and Dactylomys only.

opencc-by-4.0Dec 2011View details →

Fig. 27. Character trace for Character 1 in Basicranial Morphology And Relationships Of Antillean Heptaxodontidae (Rodentia, Ctenohystrica, Caviomorpha)

Fig. 27. Character trace for Character 1: Absence/presence of tympanic fenestra (0, white; 1, grey; 2, black). With this topology, C1:2, isolated, suture-delimited aperture emerges as a diagnostic feature of extant Chinchillidae + Amblyrhiza, with no examples of convergence and with Dinomys and Eumegamys showing an alternative state. Placing Amblyhiza among octodontoids as a relative of Geocapromys, as some authors have suggested, seems unparsimonious in light of the fact that in this superfamily neither this state nor (with the exception of Octodon) the less derived state, C1:1, notch only (bridged or unbridged), is known to occur. In this and the following figure ''Echimyidae'' refers to the four representative taxa of spiny rats selected for study (Echimys, Proechimys, Lonchothrix, Dactylomys), which are invariant for the characters traced.

opencc-by-4.0Nov 2021View details →

Synthetic dataset for mobile wireless networks with SUMO -- aggregated traces

Aggregated dataset from a published wireless dataset generator base in SUMO mobility model.    This work was supported by national funds through Fundação para a Ciência e a Tecnologia (FCT) with reference UIDB/50021/2020 and SFRH/BD/132053/2017.

opencc-by-4.0Oct 2021View details →

Microscale termophoresis fluorescence time traces testing the interaction between human survivin and a peptide derived from hSgol2

Microscale termophoresis fluorescence time traces testing the interaction between human survivin and a peptide derived from hSgol2 ( sequence: ECQVKKVNKMTSKSKKRKTS). Survivin was chemically labelled and titrated with different concentrations of hSgol2 peptide.

opencc-by-4.0Oct 2021View details →

Genetic Algorithm-Based Fuzzy Inference System for Describing Execution Tracing Quality - Collected Data

The deposited data files were used to perform the analysis introduced in the paper: Tamas Galli, Francisco Chiclana and Francois Siewe, "Genetic Algorithm Based Fuzzy Inference System for Describing Execution Tracing Quality", Mathematics, MDPI, 2021. The data were collected through an online questionnaire. The questionnaire has been exported in pdf format and uploaded as file: form_data_collection.pdf. The paper above introduces the steps of analysing, processing the data, constructing, pre-validating the model. The final validation was done over the online questionnaire exported and uploaded in pdf format as form_model_validation.pdf. Questionnaire Part 1, data file: all_usecases_wide.csv The CSV file contains the responses for each use case of part 1 of the online questionnaire enclosed. The columns contain the assigned values from the respondents, on a scale [0; 100]. The following variables are linked to each use case: Accuracy, Legibility, DesignAndImplementation, and Security. These form the input variables of execution tracing quality, while the variable Quality designates the quality of execution tracing. Each fifth column is followed by a column UseCase to designate the use case which is described by the previous five columns. The definitions of the variables can be found in the questionnaire. Questionnaire Part 2, data file: all_real_projects_scores.csv The CSV file contains the responses for real projects in part 2 of the online questionnaire enclosed. The columns contain the assigned values from the respondents, on a scale [0; 100]. Six variables are linked to each response: Accuracy, Legibility, DesignAndImplementation, and Security, which form the input variables of execution tracing quality, while the variable Quality designates the quality of execution tracing. In addition, the variable Type indicates the type of the project, such as server application, desktop application, web UI, mobile application, or embedded application. The definitions of the variables can be found in the questionnaire. Questionnaire Part 3, data file: all_extrem_values_wide.csv The CSV file contains the assigned execution tracing quality value to the provided combination of extreme input values in part 3 of the online questionnaire enclosed. The column IDs represent the question IDs in the survey. The definitions of the variables can be found in the questionnaire.

opencc-by-4.0May 2022View details →

Ray Tracing-Based Delay Model for Compensating Gravitational Deformations of VLBI Radio Telescopes (Data Set)

The precision and the reliability of very long baseline interferometry (VLBI) depend on several factors. Apart from fabrication discrepancies or meteorological effects, gravity-induced deformations of the receiving unit of VLBI radio telescopes are identified as a crucial error source biasing VLBI products and obtained results such as the scale of a realized global geodetic reference frame. Gravity-induced deformations are systematical errors and yield signal path variations (SPVs). In 1988, Clark and Thomsen derived a VLBI delay model, which was adopted by the International VLBI Service for Geodesy and Astrometry (IVS) to reduce these systematic errors. However, the model parametrizes the SPV by a linear substitute function and considers only deformations acting rotationally symmetrically. The aim of this investigation is to derive the signal path variations of a legacy radio telescope and a modern broadband VGOS-specified radio telescope and to study the effect of nonrotationally symmetric deformation patterns. For that purpose, SPVs are obtained from a nonlinear spatial ray tracing approach. For the first time, a tilt and a displacement of the subreflector perpendicular to the optical axis of the feed unit is taken into account. The results prove the commonly used VLBI delay model as a suitable first-order delay model to reduce gravity-induced deformations.

FIG. 7 in New data on the Permian ecosystem of the Rodez Basin: ichnofauna (traces of protostomians, tetrapods and fishes), jellyfishes and plants from Banassac-Canilhac (Lozère, southern France)

FIG. 7. — Slab showing the co-occurrence of tetrapod swimming tracks (Characichnos isp.) and fish trails (Undichna cf. britannica Higgs, 1988): A, photograph; B, interpretative sketch showing tetrapod swimming tracks (in red) and fish trails (in black); C, interpretative sketch showing only tetrapod swimming tracks; D, interpretative sketch showing only fish trails; E-G, details of fish trails. M486_2022.1.8. Scale bars: 2 cm.

FIG. 3 in New data on the Permian ecosystem of the Rodez Basin: ichnofauna (traces of protostomians, tetrapods and fishes), jellyfishes and plants from Banassac-Canilhac (Lozère, southern France)

FIG. 3. — Jellyfish and protostomian traces: A, B, Medusina atava (Pohlig, 1892) Walcott,1898,photograph (A) and interpretative sketch (B), specimen M486_2022.1.9; C, D, Diplopodichnus biformis Brady, 1947 (Di.) and Scoyenia gracilis White, 1929 (Sc.); photograph (C) and interpretative sketch, specimen M486_2022.1.2. Abbreviations: Ma., manubrium; Ra., radial canals; Ve., velum. Scale bars: 1 cm.

FIG. 2 in New data on the Permian ecosystem of the Rodez Basin: ichnofauna (traces of protostomians, tetrapods and fishes), jellyfishes and plants from Banassac-Canilhac (Lozère, southern France)

FIG. 2. — Stratigraphic section of Le Bousquet and location of the fossiliferous bed. Abbreviations: Thi., thickness; Lith., lithology.

FIG. 6 in New data on the Permian ecosystem of the Rodez Basin: ichnofauna (traces of protostomians, tetrapods and fishes), jellyfishes and plants from Banassac-Canilhac (Lozère, southern France)

FIG. 6. — Ichniotherium isp.: A, B, pes/manus set, photograph (A) and interpretative sketch (B). Convex hyporeliefs, M486_2022.1.4B. Abbreviations: p., pes track; m., manus track. Scale bars: 1 cm.

FIG. 5 in New data on the Permian ecosystem of the Rodez Basin: ichnofauna (traces of protostomians, tetrapods and fishes), jellyfishes and plants from Banassac-Canilhac (Lozère, southern France)

FIG. 5. — Batrachichnus salamandroides Geinitz, 1861: A, B, slab bearing a trackway with pes (p.) and manus (m.) track (a pes/manus set in visible in the bottom part of the picture), and co-occurring with a conifer leafy axis (c) (cf. Walchia, in the top of the picture), photograph (A) and interpretative sketch (B); C-E, pes track, photograph (C), digital elevation model in false colours (D) and interpretative sketch (E). Convex hyporeliefs, M486_2022.1.6B. Scale bars: 1 cm.