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3,655 results for “Structural data”
Data from: Ecosystem engineers shape ecological network structure and stability: a framework and literature review
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Data from: The evolution of protein-coding gene structure in eukaryotes
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Acoustic and fluorescence data from: A marine zooplankton community vertically structured by light across diel to interannual timescales
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Data from: The structure of the Mini-K and K-SF-42: a psychological network approach
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Data and model scripts for "Non-structural carbohydrate dynamics associated with antecedent stem water potential and air temperature in a dominant desert shrub"
<p>Model code and data as used in the first revision submitted to Plant, Cell and Environment, Feb. 2020. </p> <p>Models are coded in JAGS or OpenBUGS and run in R. Three related models are presented:</p> <p>1) "mod_allometry.R" and "jags_allometry.R" run the aboveground biomass allometry model described in Methods S1, utilizing stem and leaf mass data ("data_allometry.Rdata") and the associated initial values ("inits_allometry.Rdata")</p> <p>2) "mod_predawn.R" and "bugs_predawn.R" run the gap-filling model described in Methods S2, utilizing predawn water potential data ("data_predawn.Rdata") and the associated initial values ("inits_predawn.Rdata")</p> <p>3) "mod_NSC.R" and "bugs_NSC.R" run the NSC model described in the main text of the manuscript, utilizing NSC and covariate data ("data_NSC.Rdata") and the associated initial values ("inits_NSC.Rdata")</p>
Macaca mulatta structural and diffusion weighted MRI data
<p> </p> <p>The AMU dataset includes structural and diffusion weighted MRI data from 4 <em>Macaca mulatta</em> monkeys.</p> <p>The data is provided both as a directory structure compressed as <code>all_the_data.zip</code>, and as individual files. The correspondence between the directory structure and the individual files is contained in the file <code>tree.json</code>. The bash command <code>source unflatten.sh</code> can be used to convert the individual files into the original directory structure.</p> <p><strong>Sample Description</strong></p> <ul> <li>Sample size: 4</li> <li>Age distribution: 7-8 years</li> <li>Weight distribution: 7.5-12.5 kgs</li> <li>Sex distribution: 3 male, 1 female</li> </ul> <p>Click <a href="http://fcon_1000.projects.nitrc.org/indi/PRIME/files/amu.csv">here</a> for the full sample description (.csv download)</p> <p><strong>Scan Procedures and Parameters</strong></p> <p><em>Ethics approval:</em> obtained at local Ethics Committee</p> <p><em>Animal care and housing:</em> At Institut de Neurosciences de La Timone</p> <p><em>Any applicable training:</em> N/A</p> <p><strong>Scanning preparations</strong></p> <p><em>Anesthesia procedures:</em> Isoflurane</p> <p><em>Time between anesthesia and scanning:</em> None- anesthesia was performed and monitored during scanning.</p> <p><em>Head fixation:</em> Kopf frame and ear bars</p> <p><em>Position in scanner and procedure used:</em> Sphinx position. <strong>Fiducial marker placed on right side.</strong></p> <p><em>Contrast agent:</em> None</p> <p><strong>During scanning</strong></p> <p><em>Physiological monitoring:</em> Heart rate, respiration</p> <p><em>Additional procedures:</em> Ventilation</p> <p><strong>Scan sequences</strong></p> <ul> <li>Scanner type: Siemens Prisma 3T</li> <li>Head coil: Body transmit array, 11cm loop receiving coil</li> <li>Optimization of the magnetic field prior to data acquisition: Automatic B0 shimming procedures from Siemens</li> <li> </li> <li>Diffusion-weighted: <ul> <li>Diffusion SE-EPI sequence</li> <li>Voxel resolution: 1 x 1 x 1 mm</li> <li>TE: 87.6ms</li> <li>TR: 7520ms</li> <li>64b1000</li> <li>6b300</li> <li>5b0</li> <li>Two repetitions with reversed phase encoding direction</li> </ul> </li> <li>Structural: <ul> <li>T1 <ul> <li>MPRAGE sequence</li> <li>Voxel resolution: 0.8 x 0.8 x 0.8 mm</li> <li>TE: 2.04ms</li> <li>TR: 2900ms</li> <li>TI: 1000ms</li> </ul> </li> <li>T2 <ul> <li>3D SPACE sequence</li> <li>Voxel resolution: 0.8 x 0.8 x 0.8mm</li> <li>TE: 561ms</li> <li>TR: 3200ms</li> </ul> </li> <li>QSM <ul> <li>3D GRE sequence</li> <li>Voxel resolution: 0.93 x 0.93 x 1mm</li> <li>TE: 2.7-42ms</li> <li>TR: 45ms</li> </ul> </li> </ul> </li> </ul> <p><strong>Personnel</strong></p> <ul> <li>Thomas Brochier<sup>1</sup></li> <li>Pascal Belin<sup>1</sup></li> <li>Frédéric Chavanne<sup>1</sup></li> <li>Lionel Velly<sup>1</sup></li> <li>Clémentine Bodin<sup>1</sup></li> <li>Luc Renaud<sup>1,2</sup></li> <li>Marc Martin<sup>1,2</sup></li> <li>Laurence Boes<sup>1,2</sup></li> <li>Julien Sein<sup>1</sup></li> <li>Bruno Nazarian<sup>1</sup></li> <li>Jean-Luc Anton<sup>1</sup></li> </ul> <p><sup>1</sup>Institut de Neurosciences de la Timone (INT), UMR7289 CNRS & Aix-Marseille Université, Marseille, France<br> <sup>2</sup>Centre d’Exploration Fonctionnelle et de Formation en Primatologie (CE2F-PRIM), UMS5737 CNRS & Aix-Marseille Université, Marseille, France</p> <p><strong>Acknowledgements</strong></p> <p>We gratefully acknowledge the support of French France-Life Imaging (FLI) and Infrastructures en Biologie Santé et Agronomie (IBISA)</p> <p><strong>Funding</strong></p> <p>Project PRIMAVOICE, PI Belin, French Agence Nationale de la Recherche</p> <p>Detailed information can be found at <a href="http://fcon_1000.projects.nitrc.org/indi/PRIME/amu.html">http://fcon_1000.projects.nitrc.org/indi/PRIME/amu.html</a>.</p> <p><strong>Citation</strong></p> <ul> <li>Brochier, T., Belin, P., Chavanne, F., Velly, L., Bodin, C., Renaud, L., Martin, M., Boes, L., Sein, J., Nazarian, B., & Anton, J.-L. (2019). Macaca mulatta structural and diffusion weighted MRI data [Data set]. Zenodo. <a href="https://doi.org/10.5281/ZENODO.3402456">https://doi.org/10.5281/ZENODO.3402456</a>.</li> <li>Milham, M. P., Ai, L., Koo, B., Xu, T., Amiez, C., Balezeau, F., … Schroeder, C. E. (2018). An Open Resource for Non-human Primate Imaging. Neuron, 100(1), 61–74.e2. <a href="https://doi.org/10.1016/j.neuron.2018.08.039">https://doi.org/10.1016/j.neuron.2018.08.039</a>.</li> </ul>
Raw diffraction data for structure of SARS-CoV-2 main protease with PCM-0102535 (ID: mpro-x1493 / PDB: 5RG0)
Raw diffraction data for mpro-x1493 / PDB ID 5RG0 (see: https://www.ebi.ac.uk/pdbe/entry/pdb/5RG0) - SARS-CoV-2 main protease in complex with PCM-0102535 (SMILES:CC(=O)N1CCN(CC1)C(=O)CCl) collected as part of an XChem crystallographic fragment screening campaign on beamline i04-1 at Diamond Light Source. The deposited structure was automatically processed with standard Diamond tools and PanDDA, however the raw data are being made available to allow reanalysis by any interested party. For more details see: https://www.diamond.ac.uk/covid-19/for-scientists/Main-protease-structure-and-XChem.html
Raw diffraction data for structure of SARS-CoV-2 main protease with PCM-0102274 (ID: mpro-x1478 / PDB: 5RFZ)
Raw diffraction data for mpro-x1478 / PDB ID 5RFZ (see: https://www.ebi.ac.uk/pdbe/entry/pdb/5RFZ) - SARS-CoV-2 main protease in complex with PCM-0102274 (SMILES:ClCC(=O)Nc1cccnc1Cl) collected as part of an XChem crystallographic fragment screening campaign on beamline i04-1 at Diamond Light Source. The deposited structure was automatically processed with standard Diamond tools and PanDDA, however the raw data are being made available to allow reanalysis by any interested party. For more details see: https://www.diamond.ac.uk/covid-19/for-scientists/Main-protease-structure-and-XChem.html
Raw diffraction data for structure of SARS-CoV-2 main protease with PCM-0102243 (ID: mpro-x1418 / PDB: 5RFW)
Raw diffraction data for mpro-x1418 / PDB ID 5RFW (see: https://www.ebi.ac.uk/pdbe/entry/pdb/5RFW) - SARS-CoV-2 main protease in complex with PCM-0102243 (SMILES:ClCC(=O)N1CCN(Cc2cccs2)CC1) collected as part of an XChem crystallographic fragment screening campaign on beamline i04-1 at Diamond Light Source. The deposited structure was automatically processed with standard Diamond tools and PanDDA, however the raw data are being made available to allow reanalysis by any interested party. For more details see: https://www.diamond.ac.uk/covid-19/for-scientists/Main-protease-structure-and-XChem.html
Raw diffraction data for structure of SARS-CoV-2 main protease with PCM-0102306 (ID: mpro-x1412 / PDB: 5RFV)
Raw diffraction data for mpro-x1412 / PDB ID 5RFV (see: https://www.ebi.ac.uk/pdbe/entry/pdb/5RFV) - SARS-CoV-2 main protease in complex with PCM-0102306 (SMILES:ClCC(=O)N1CCN(CC1)C(=O)c2cccs2) collected as part of an XChem crystallographic fragment screening campaign on beamline i04-1 at Diamond Light Source. The deposited structure was automatically processed with standard Diamond tools and PanDDA, however the raw data are being made available to allow reanalysis by any interested party. For more details see: https://www.diamond.ac.uk/covid-19/for-scientists/Main-protease-structure-and-XChem.html
Raw diffraction data for structure of SARS-CoV-2 main protease with PCM-0102739 (ID: mpro-x1386 / PDB: 5RFS)
Raw diffraction data for mpro-x1386 / PDB ID 5RFS (see: https://www.ebi.ac.uk/pdbe/entry/pdb/5RFS) - SARS-CoV-2 main protease in complex with PCM-0102739 (SMILES:ClCC(=O)N1CCN(Cc2ccsc2)CC1) collected as part of an XChem crystallographic fragment screening campaign on beamline i04-1 at Diamond Light Source. The deposited structure was automatically processed with standard Diamond tools and PanDDA, however the raw data are being made available to allow reanalysis by any interested party. For more details see: https://www.diamond.ac.uk/covid-19/for-scientists/Main-protease-structure-and-XChem.html
Raw diffraction data for structure of SARS-CoV-2 main protease with PCM-0102389 (ID: mpro-x1358 / PDB: 5RFL)
Raw diffraction data for mpro-x1358 / PDB ID 5RFL (see: https://www.ebi.ac.uk/pdbe/entry/pdb/5RFL) - SARS-CoV-2 main protease in complex with PCM-0102389 (SMILES:Oc1ccccc1NC(=O)C2CCN(CC2)C(=O)CCl) collected as part of an XChem crystallographic fragment screening campaign on beamline i04-1 at Diamond Light Source. The deposited structure was automatically processed with standard Diamond tools and PanDDA, however the raw data are being made available to allow reanalysis by any interested party. For more details see: https://www.diamond.ac.uk/covid-19/for-scientists/Main-protease-structure-and-XChem.html
Raw diffraction data for structure of SARS-CoV-2 main protease with PCM-0103067 (ID: mpro-x1348 / PDB: 5RFJ)
Raw diffraction data for mpro-x1348 / PDB ID 5RFJ (see: https://www.ebi.ac.uk/pdbe/entry/pdb/5RFJ) - SARS-CoV-2 main protease in complex with PCM-0103067 (SMILES:COc1cccc2sc(NC(=O)CCl)nc12) collected as part of an XChem crystallographic fragment screening campaign on beamline i04-1 at Diamond Light Source. The deposited structure was automatically processed with standard Diamond tools and PanDDA, however the raw data are being made available to allow reanalysis by any interested party. For more details see: https://www.diamond.ac.uk/covid-19/for-scientists/Main-protease-structure-and-XChem.html
Raw diffraction data for structure of SARS-CoV-2 main protease with PCM-0102353 (ID: mpro-x1336 / PDB: 5RFI)
Raw diffraction data for mpro-x1336 / PDB ID 5RFI (see: https://www.ebi.ac.uk/pdbe/entry/pdb/5RFI) - SARS-CoV-2 main protease in complex with PCM-0102353 (SMILES:Cc1ccc(C)c(c1)S(=O)(=O)N2CCN(CC2)C(=O)CCl) collected as part of an XChem crystallographic fragment screening campaign on beamline i04-1 at Diamond Light Source. The deposited structure was automatically processed with standard Diamond tools and PanDDA, however the raw data are being made available to allow reanalysis by any interested party. For more details see: https://www.diamond.ac.uk/covid-19/for-scientists/Main-protease-structure-and-XChem.html
Raw diffraction data for structure of SARS-CoV-2 main protease with PCM-0102575 (ID: mpro-x1351 / PDB: 5RFK)
Raw diffraction data for mpro-x1351 / PDB ID 5RFK (see: https://www.ebi.ac.uk/pdbe/entry/pdb/5RFK) - SARS-CoV-2 main protease in complex with PCM-0102575 (SMILES:ClCC(=O)N1CCC(CC1)NC(=O)c2ccccc2) collected as part of an XChem crystallographic fragment screening campaign on beamline i04-1 at Diamond Light Source. The deposited structure was automatically processed with standard Diamond tools and PanDDA, however the raw data are being made available to allow reanalysis by any interested party. For more details see: https://www.diamond.ac.uk/covid-19/for-scientists/Main-protease-structure-and-XChem.html
Raw diffraction data for structure of SARS-CoV-2 main protease with PCM-0102539 (ID: mpro-x1374 / PDB: 5RFM)
Raw diffraction data for mpro-x1374 / PDB ID 5RFM (see: https://www.ebi.ac.uk/pdbe/entry/pdb/5RFM) - SARS-CoV-2 main protease in complex with PCM-0102539 (SMILES:Cc1ccc(cc1)N(C2CS(=O)(=O)C=C2)C(=O)CCl) collected as part of an XChem crystallographic fragment screening campaign on beamline i04-1 at Diamond Light Source. The deposited structure was automatically processed with standard Diamond tools and PanDDA, however the raw data are being made available to allow reanalysis by any interested party. For more details see: https://www.diamond.ac.uk/covid-19/for-scientists/Main-protease-structure-and-XChem.html
Raw diffraction data for structure of SARS-CoV-2 main protease with PCM-0102277 (ID: mpro-x1334 / PDB: 5RFH)
Raw diffraction data for mpro-x1334 / PDB ID 5RFH (see: https://www.ebi.ac.uk/pdbe/entry/pdb/5RFH) - SARS-CoV-2 main protease in complex with PCM-0102277 (SMILES:ClCC(=O)N1CCN(Cc2ccc(Cl)s2)CC1) collected as part of an XChem crystallographic fragment screening campaign on beamline i04-1 at Diamond Light Source. The deposited structure was automatically processed with standard Diamond tools and PanDDA, however the raw data are being made available to allow reanalysis by any interested party. For more details see: https://www.diamond.ac.uk/covid-19/for-scientists/Main-protease-structure-and-XChem.html
Raw diffraction data for structure of SARS-CoV-2 main protease with PCM-0102372 (ID: mpro-x1311 / PDB: 5RFG)
Raw diffraction data for mpro-x1311 / PDB ID 5RFG (see: https://www.ebi.ac.uk/pdbe/entry/pdb/5RFG) - SARS-CoV-2 main protease in complex with PCM-0102372 (SMILES:ClCC(=O)N(C1CS(=O)(=O)C=C1)c2ccccc2) collected as part of an XChem crystallographic fragment screening campaign on beamline i04-1 at Diamond Light Source. The deposited structure was automatically processed with standard Diamond tools and PanDDA, however the raw data are being made available to allow reanalysis by any interested party. For more details see: https://www.diamond.ac.uk/covid-19/for-scientists/Main-protease-structure-and-XChem.html
Raw diffraction data for structure of SARS-CoV-2 main protease with PCM-0102704 (ID: mpro-x1308 / PDB: 5RFF)
Raw diffraction data for mpro-x1308 / PDB ID 5RFF (see: https://www.ebi.ac.uk/pdbe/entry/pdb/5RFF) - SARS-CoV-2 main protease in complex with PCM-0102704 (SMILES:ClCC(=O)N1CCN(CC1)S(=O)(=O)c2ccc(Cl)cc2) collected as part of an XChem crystallographic fragment screening campaign on beamline i04-1 at Diamond Light Source. The deposited structure was automatically processed with standard Diamond tools and PanDDA, however the raw data are being made available to allow reanalysis by any interested party. For more details see: https://www.diamond.ac.uk/covid-19/for-scientists/Main-protease-structure-and-XChem.html
Raw diffraction data for structure of SARS-CoV-2 main protease with Z1400780201 (ID: mpro-x1093 / PDB: 5RF7)
Raw diffraction data for mpro-x1093 / PDB ID 5RF7 (see: https://www.ebi.ac.uk/pdbe/entry/pdb/5RF7) - SARS-CoV-2 main protease in complex with Z1400780201 (SMILES:CN1CCN(CC1)C(=O)CC1=CNC2=NC=CC=C12) collected as part of an XChem crystallographic fragment screening campaign on beamline i04-1 at Diamond Light Source. The deposited structure was automatically processed with standard Diamond tools and PanDDA, however the raw data are being made available to allow reanalysis by any interested party. For more details see: https://www.diamond.ac.uk/covid-19/for-scientists/Main-protease-structure-and-XChem.html
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.