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3,481
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3,481 results for “data set”
HNF4a Mediated Formation of Hepatic Progentiors [array expression data set]
GEO Series GSE104612. Homo sapiens. 26 samples. Type: Expression profiling by array.
Transition to naïve human pluripotency mirrors pan-cancer DNA hypermethylation (data set 1)
GEO Series GSE128125. Homo sapiens. 8 samples. Type: Methylation profiling by genome tiling array.
CMV 2b immunoprecipitated small RNAs data set
GEO Series GSE23771. Arabidopsis thaliana. 1 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Risk SNPs mediated promoter-enhancer switching promotes prostate cancer progression through lncRNA PCAT19 (RNA-seq data sets)
GEO Series GSE106774. Homo sapiens. 10 samples. Type: Expression profiling by high throughput sequencing.
This data set is six 30-day ocean state estimation products for LTER-CCE cruises. The time periods of data assimilation fits for each LTER-CCE cruise are the following: 2006: 5/8 - 6/6, 2007: 4/1- 4/30, 2008 : 10/1 - 10/30, 2009 : 4/15 - 5/14, 2011 : 6/17 - 7/16, 2012 : 7/27 - 8/25
Used the sea surface height, sea surface temperature data measured from the space, and in situ temperature and salinity data from varied observational platforms including CCE-LTER cruises, we constrained the numerical ocean circulation model, Regional Ocean Modeling System (ROMS), so that the model simulation closely follows the observed ocean states. Data files are in netcdf format containing longitude, latitude, bathymetry, sea surface height, ocean current, temperature, salinity, density anomaly and surface fluxes. ROMS has a terrain following vertical coordinate and resolves shallow coastal regions better by construction. As a result, the depth of vertical level changes depending on the depth of bathymetry. This data set is the product of the investigations presented in Miller, A. J., H. Song and A. C. Subramanian, 2015: The physical oceanographic environment during the CCE-LTER years: Changes in climate and concepts. Deep-Sea Research II, 112, 6-17. Song, H., A. J. Miller, S. McClatchie, E. D. Weber, K. M. Nieto and D. M. Checkley, 2012: Application of a data-assimilation model to variability of Pacific sardine spawning and survivor habitats with ENSO in the California Current System. Journal of Geophysical Research-Oceans, 117, C03009, doi:10.1029/2011JC007302. We gratefully acknowledge continued funding from NSF (California Current Ecosystem LTER: OCE-0417616 and OCE-1026607) and NOAA (IOOS: NA17RJ1231)
Primary constitutional MLH1 epimutations: a focal epigenetic event [FFPE data sets]
GEO Series GSE107352. Homo sapiens. 51 samples. Type: Methylation profiling by genome tiling array.
Characterization of microRNA-493-5p targets in liver cell lines (2nd set of data)
GEO Series GSE125407. Homo sapiens. 4 samples. Type: Expression profiling by array.
Disruption of the TFAP2A regulatory domain causes Branchio-Oculo-Facial Syndrome (BOFS) and illuminates pathomechanisms for other human neurocristopathies [RNA-seq data set 1]
GEO Series GSE108521. Homo sapiens. 5 samples. Type: Expression profiling by high throughput sequencing.
Loss of TET2 results in DNA methylation changes in mouse GC B-cells (Bisulfite-Seq data set)
GEO Series GSE111698. Mus musculus. 6 samples. Type: Methylation profiling by high throughput sequencing.
Reduced MEK inhibition confers a growth advantage and reduces genomic instability in naïve human ES cells (RNA-seq data set)
GEO Series GSE110805. Homo sapiens. 19 samples. Type: Expression profiling by high throughput sequencing.
CpG island mediated linear and spatial gene partitioning (other data sets)
GEO Series GSE80795. Homo sapiens; Mus musculus. 0 samples. Type: Third-party reanalysis; Other; Methylation profiling by high throughput sequencing.
The neuromuscular junction is a focal point of mTORC1 signaling in sarcopenia [TSCmKO data set].
GEO Series GSE139213. Mus musculus. 40 samples. Type: Expression profiling by high throughput sequencing.
8-oxoG RNA IP data set 2: Air pollution mixture derived from the reaction of 100 ppb acrolein, 97 ppb methacrolein, 44 ppb alpha-pinene and 100 ppb O3 for 1.5 h
GEO Series GSE137017. Homo sapiens. 8 samples. Type: Expression profiling by high throughput sequencing; Other.
Transcriptome RNA Sequencing Data Set of Differential Gene Expression in Salmonella enterica serovar Typhimurium 14028S within Acanthamoeba castellanii, and under Oxidative and Starvation Stress Condi
GEO Series GSE270532. Salmonella enterica subsp. enterica serovar Typhimurium str. ATCC 14028. 22 samples. Type: Expression profiling by high throughput sequencing.
Systems genomics study reveals expression quantitative trait loci, regulator genes and pathways associated with boar taint in pigs (SNP60v2 BeadChip data set)
GEO Series GSE113318. Sus scrofa. 48 samples. Type: Genome variation profiling by SNP array.
Acetaminophen (APAP) Rat Blood Test Gene Expression Data Set
GEO Series GSE5594. Rattus norvegicus. 144 samples. Type: Expression profiling by array.
Learning the cis sequence elements that determine AP-1 monomer specificity (RNA-seq data sets)
GEO Series GSE111855. Mus musculus. 17 samples. Type: Expression profiling by high throughput sequencing; Other.
Acetaminophen (APAP) Rat Liver Test Gene Expression Data Set
GEO Series GSE5595. Rattus norvegicus. 144 samples. Type: Expression profiling by array.
PAtCh-Cap: input strategy for improving analysis of ChIP-exo data sets and beyond
GEO Series GSE79563. Homo sapiens. 7 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
West Africa Coastal Vulnerability Mapping: Demographic and Health Survey Data Sets
The West Africa Coastal Vulnerability Mapping: Demographic and Health Survey Data Sets present grids of maternal education levels and household wealth based on Demographic and Health Survey (DHS) cluster level data for ten West African countries. While the maternal education levels are comparable across countries, owing to different underlying indicators, the household wealth index is not. Education can directly influence risk perception, skills and knowledge and indirectly reduce poverty, improve health, and promote access to information and resources. When facing natural hazards or climate risks, educated individuals, households, and societies are assumed to be more empowered and more adaptive in their response to, preparation for, and recovery from disasters. Education is a key background indicator that helps contextualize a country's health and development situation. The household wealth index is a composite measure of a household's cumulative living standard. The wealth index is calculated using easy-to-collect data on a household's ownership of selected assets, such as televisions and bicycles, materials used for housing construction, and types of water access and sanitation facilities. Bayesian spatial interpolation methods were employed to create country level grids based on DHS cluster point data for each country. Data are from the following dates by country: Benin (2006), Cameroon (2011), Cote d'Ivoire (2012), Ghana (2008), Guinea (2012), Liberia (2011), Nigeria (2010), Sierra Leone (2008), and Togo (1998).
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.