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3,292 results for “DNA Barcode”
Figure 5 from: Miller J, Beentjes K, van Helsdingen P, IJland S (2013) Which specimens from a museum collection will yield DNA barcodes? A time series study of spiders in alcohol. ZooKeys 365: 245-261. https://doi.org/10.3897/zookeys.365.5787
Figure 5 - DNA barcode sequencing success for fresh specimens (collected 2010 or later). A Specimen body size not significantly different for successful vs. failed DNA barcode sequencing attempts (one-way ANOVA, F (1, 216) = 1.45, p = 0.230). Boxes are 25–75% quartiles bisected by the median, whisker lines drawn to the largest/smallest data point less than 1.5 times the box height, outliers less than 3 times the box height shown as circles, more than 3 shown as stars. B Most of the fresh specimens included in this study belonged to one of two clades: Orbiculariae (ORB) or the 'RTA' clade (RTA); only a handful of specimens represented older phylogenetic branches, such as haplogyne (HAP) spiders; no mygalomorph spiders were included; success expressed as a percentage appears on or above each bar. Success rate for Orbiculariae vs. 'RTA' clade specimens not significantly different (χ2 = 2.18, d.f. = 2, N = 220, p = 0.337).
Figure 4 from: Miller J, Beentjes K, van Helsdingen P, IJland S (2013) Which specimens from a museum collection will yield DNA barcodes? A time series study of spiders in alcohol. ZooKeys 365: 245-261. https://doi.org/10.3897/zookeys.365.5787
Figure 4 - A DNA concentration (log10 transformed) for specimens in the time series study that yielded or failed to yield a successful DNA barcode sequence ranked by DNA concentration; symbols as in Figure 3 B Box plot showing difference in DNA concentration for specimens extracted using both destructive and nondestructive methods; species arranged by size (Araneus quadratus, Tegenaria atrica, and Dolomedes plantarius excluded). Sample size in parentheses, boxes are 25–75% quartiles bisected by the median, whisker lines indicate minimum/maximum values (where n > 4).
Figure 13 from: Winterbottom R, Hanner R, Burridge M, Zur M (2014) A cornucopia of cryptic species - a DNA barcode analysis of the gobiid fish genus Trimma (Percomorpha, Gobiiformes). ZooKeys 381: 79-111. https://doi.org/10.3897/zookeys.381.6445
Figure 13 - Left lateral views of freshly collected specimens of 10 of the 11 haplogroups forming the Trimma tevegae group (no image available for Trimma xanthochrum Group 2a, from Ceram), plus the phenetically basal taxon, Trimma habrum. All images by R. Winterbottom, except for C and I (courtesy of Mark V. Erdmann). Standard length, sex, locality and catalogue number given where available. A Trimma habrum, 16.8 male, Penemu I., Raja Ampat, ROM 84881 B Trimma tevegae (Group 1), 14.4 female, Uchelbeluu Reef, Palau, ROM 80390 (note prolapsed intestine) C Trimma gigantum (Group 9), Fam Is., Raja Ampat D Trimma xanthochrum (Group 2c), 19.8 male, Uchelbeluu Reef, Palau, ROM 93075 E Trimma gigantum (Group 8), 27.7 female, Uchelbelu Reef, Palau, ROM 80353 F Trimma xanthochrum (Group 2), 22.0 female, Penemu I., Raja Ampat, ROM 84885 G Trimma xanthochrum (Group 2b), 18.4 female, Rabaul, New Britain, ROM 88170 H Trimma tevegae (Group 5), 22.5 male, Koror, Palau, ROM 80312 I Trimma tevegae (Group 4), SE Misool, Raja Ampat J Trimma caudomaculatum (Group 7), 21.5 female, Rabaul, ROM 92109 (Note broken tip of second spine of first dorsal fin) K Trimma tevegae (Group 6), 16.0 male, Rabaul, ROM 92319 (group 6 is believed to represent the 'true' Trimma tevegae).
Figure 1 from: Winterbottom R, Hanner R, Burridge M, Zur M (2014) A cornucopia of cryptic species - a DNA barcode analysis of the gobiid fish genus Trimma (Percomorpha, Gobiiformes). ZooKeys 381: 79-111. https://doi.org/10.3897/zookeys.381.6445
Figure 1 - Condensed Neighbour-Joining network of the COI gene based on an analysis of 473 specimens of Trimma. Solid bars represent approximate within group variation. Species names/numbers are followed by the locality of the specimens, with the number of specimens followed by the percentage variation within the group in parentheses. Scale bar: 2% genetic distance. Coloured boxes and their alphabetical notations refer to the sequential groups discussed in the text. Type localities for each species are underlined where such samples were available. "Queensland" is used in lieu of "Great Barrier Reef".
Figure 2 from: Winterbottom R, Hanner R, Burridge M, Zur M (2014) A cornucopia of cryptic species - a DNA barcode analysis of the gobiid fish genus Trimma (Percomorpha, Gobiiformes). ZooKeys 381: 79-111. https://doi.org/10.3897/zookeys.381.6445
Figure 2 - Map of the Indo-Pacific, showing localities where samples were collected. Inset - details of the Raja Ampat islands and Bird's Head region of Papua New Guinea.
Figure 4 from: Winterbottom R, Hanner R, Burridge M, Zur M (2014) A cornucopia of cryptic species - a DNA barcode analysis of the gobiid fish genus Trimma (Percomorpha, Gobiiformes). ZooKeys 381: 79-111. https://doi.org/10.3897/zookeys.381.6445
Figure 4 - Relationships of 54 specimens of the Trimma tevegae – Trimma caudomaculatum group based on COI.
Figure 14 from: Winterbottom R, Hanner R, Burridge M, Zur M (2014) A cornucopia of cryptic species - a DNA barcode analysis of the gobiid fish genus Trimma (Percomorpha, Gobiiformes). ZooKeys 381: 79-111. https://doi.org/10.3897/zookeys.381.6445
Figure 14 - Left lateral views of freshly collected specimens of the four haplogroups forming the Trimma caesiura group (above), and the four haplogroups of the Trimma nasa group (below). All images by R. Winterbottom. Standard length, sex, locality and catalogue number follow the species name. A Trimma caesiura, 24.0 male, Babeldaob I., Palau, ROM 76105 B Trimma naudei, 26.7 male, Comores, ROM 59796 C Trimma naudei, 23.3 female, Nha Trang, Vietnam, ROM 73199 D Trimma lantana, 22.6 male, Helen Reef, Palau, ROM 83077 E Trimma nasa, 19.5 female, Kepotsol I., Raja Ampat, ROM 85321 F Trimma nasa, 22.6 female, New Caledonia, ROM 63925 G Trimma nasa, 16.5 female, Uchelbeluu Reef, Palau, ROM 80392 H Trimma nasa, 16.7 female, Rabaul, New Britain, ROM 92157.
Figures 16-17 from: Huemer P, Karsholt O, Mutanen M (2014) DNA barcoding as a screening tool for cryptic diversity: an example from Caryocolum, with description of a new species (Lepidoptera, Gelechiidae). ZooKeys 404: 91-111. https://doi.org/10.3897/zookeys.404.7234
Figures 16-17 - Female genitalia. 16 Caryocolum amaurella, Finland, slide GU 14/1372 P.Huemer 17 Caryocolum amaurella, Finland, slide GU 14/1371 P.Huemer.
Figures 10-13 from: Huemer P, Karsholt O, Mutanen M (2014) DNA barcoding as a screening tool for cryptic diversity: an example from Caryocolum, with description of a new species (Lepidoptera, Gelechiidae). ZooKeys 404: 91-111. https://doi.org/10.3897/zookeys.404.7234
Figures 10-13 - Details of male genitalia (vinculum-valva-complex). 10 Caryocolum crypticum sp. n., paratype, Italy, slide GU 86/041 P.Huemer 11 Caryocolum crypticum sp. n., paratype, Italy, slide GEL 1215 P.Huemer 12 Caryocolum amaurella, Finland, slide GU 14/1373 P.Huemer 13 Caryocolum amaurella, Finland, slide GU 14/1374 P.Huemer.
Figures 2-5 from: Huemer P, Karsholt O, Mutanen M (2014) DNA barcoding as a screening tool for cryptic diversity: an example from Caryocolum, with description of a new species (Lepidoptera, Gelechiidae). ZooKeys 404: 91-111. https://doi.org/10.3897/zookeys.404.7234
Figures 2-5 - Adults. 2 Caryocolum crypticum sp. n., holotype 3 Caryocolum crypticum sp. n., paratype, female, Greece 4 Caryocolum amaurella, male, Finland 5 Caryocolum amaurella, male, Austria.
Figure 1 from: Huemer P, Karsholt O, Mutanen M (2014) DNA barcoding as a screening tool for cryptic diversity: an example from Caryocolum, with description of a new species (Lepidoptera, Gelechiidae). ZooKeys 404: 91-111. https://doi.org/10.3897/zookeys.404.7234
Figure 1 - Neighbour-joining tree (Kimura 2 parameter, built with MEGA 5; cf. Tamura et al. 2011), with only sequences longer than 500 bp considered. The width of the triangles represents the sample size, and the depth the genetic variation within the cluster. Currently recognized conspecific taxa with maximum divergence greater than 3% are shown as separate clades. Source: DNA Barcode data from BOLD (Barcode of Life Database, cf. Ratnasingham and Hebert 2007).
Figures 8-9 from: Huemer P, Karsholt O, Mutanen M (2014) DNA barcoding as a screening tool for cryptic diversity: an example from Caryocolum, with description of a new species (Lepidoptera, Gelechiidae). ZooKeys 404: 91-111. https://doi.org/10.3897/zookeys.404.7234
Figures 8-9 - Male genitalia. 8 Caryocolum amaurella (Hering), Finland, slide GU 14/1373 P.Huemer; 9 Caryocolum amaurella, Finland, slide GU 14/1374 P.Huemer.
Figures 14-15 from: Huemer P, Karsholt O, Mutanen M (2014) DNA barcoding as a screening tool for cryptic diversity: an example from Caryocolum, with description of a new species (Lepidoptera, Gelechiidae). ZooKeys 404: 91-111. https://doi.org/10.3897/zookeys.404.7234
Figures 14-15 - Female genitalia. 14 Caryocolum crypticum sp. n., holotype, slide GEL 1234 P.Huemer 15 Caryocolum crypticum sp. n., paratype, Italy, slide GEL 1232 P.Huemer.
Figures 6-7 from: Huemer P, Karsholt O, Mutanen M (2014) DNA barcoding as a screening tool for cryptic diversity: an example from Caryocolum, with description of a new species (Lepidoptera, Gelechiidae). ZooKeys 404: 91-111. https://doi.org/10.3897/zookeys.404.7234
Figures 6-7 - Male genitalia. 6 Caryocolum crypticum sp. n., paratype, Italy, slide GU 86/041 P.Huemer 7 Caryocolum crypticum sp. n., paratype, Italy, slide GEL 1215 P.Huemer.
Figure 2 from: Carvalho-Batista A, Negri M, Pileggi LG, Castilho AL, Costa RC, Mantelatto FL (2014) Inferring population connectivity across the range of distribution of the stiletto shrimp Artemesia longinaris Spence Bate, 1888 (Decapoda, Penaeidae) from DNA barcoding: implications for fishery management. In: Wehrtmann IS, Bauer RT (Eds) Proceedings of the Summer Meeting of the Crustacean Society and the Latin American Association of Carcinology, Costa Rica, July 2013. ZooKeys 457: 271-288. https://doi.org/10.3897/zookeys.457.6569
Figure 2 - Dendrogram based on Neighbor-Joining distance method of COI gene sequences of individuals of Artemesia longinaris. Localities represent the analyzed specimens. Numbers are bootstrap support values (1000 replicates); values below 50% are not shown.
Figure 4 from: Carvalho-Batista A, Negri M, Pileggi LG, Castilho AL, Costa RC, Mantelatto FL (2014) Inferring population connectivity across the range of distribution of the stiletto shrimp Artemesia longinaris Spence Bate, 1888 (Decapoda, Penaeidae) from DNA barcoding: implications for fishery management. In: Wehrtmann IS, Bauer RT (Eds) Proceedings of the Summer Meeting of the Crustacean Society and the Latin American Association of Carcinology, Costa Rica, July 2013. ZooKeys 457: 271-288. https://doi.org/10.3897/zookeys.457.6569
Figure 4 - Haplotype network of Artemesia longinarisaccording to Median-Joining analysis. Each circle represent one haplotype found in the localities (53 haplotypes in 60 specimens). The size of the circle of each haplotype is proportional to its frequency in the sample. Each small dash represents a mutational step.
Figure 1 from: Carvalho-Batista A, Negri M, Pileggi LG, Castilho AL, Costa RC, Mantelatto FL (2014) Inferring population connectivity across the range of distribution of the stiletto shrimp Artemesia longinaris Spence Bate, 1888 (Decapoda, Penaeidae) from DNA barcoding: implications for fishery management. In: Wehrtmann IS, Bauer RT (Eds) Proceedings of the Summer Meeting of the Crustacean Society and the Latin American Association of Carcinology, Costa Rica, July 2013. ZooKeys 457: 271-288. https://doi.org/10.3897/zookeys.457.6569
Figure 1 - Southwest Atlantic collection sites. Map showing the localities of the specimens of Artemesia longinaris analyzed: 1 Macaé, Brazil 2 Ubatuba, Brazil 3 Santos, Brazil 4 Cananéia, Brazil 5 São Francisco do Sul, Brazil 6 Rio Grande, Brazil 7 Mar del Plata, Argentina. The gray band indicates the complete geographical distribution of Artemesia longinaris.
Figure 3 from: Carvalho-Batista A, Negri M, Pileggi LG, Castilho AL, Costa RC, Mantelatto FL (2014) Inferring population connectivity across the range of distribution of the stiletto shrimp Artemesia longinaris Spence Bate, 1888 (Decapoda, Penaeidae) from DNA barcoding: implications for fishery management. In: Wehrtmann IS, Bauer RT (Eds) Proceedings of the Summer Meeting of the Crustacean Society and the Latin American Association of Carcinology, Costa Rica, July 2013. ZooKeys 457: 271-288. https://doi.org/10.3897/zookeys.457.6569
Figure 3 - Phylogram for individuals of Artemesia longinaris inferred from Maximum Likelihood analysis of COI gene sequences. Localities represent analyzed specimens. Numbers are bootstrap support values (1000 replicates); values below 50% are not shown.
Figure 3 from: van der Bank H, Greenfield R (2015) A pioneer survey and DNA barcoding of some commonly found gastropod molluscs on Robben Island. ZooKeys 481: 15-23. https://doi.org/10.3897/zookeys.481.8188
Figure 3 - A parsimonious bootstrap (50% majority-rule) consensus tree obtained for the marine snails, using Semimytilus algosus as the outgroup.
Figure 2 from: van der Bank H, Greenfield R (2015) A pioneer survey and DNA barcoding of some commonly found gastropod molluscs on Robben Island. ZooKeys 481: 15-23. https://doi.org/10.3897/zookeys.481.8188
Figure 2 - A parsimonious bootstrap (50% majority-rule) consensus tree obtained for the land snails, using Semimytilus algosus as the outgroup.
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