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Fig. 3 in Associations and a new species of the genus Apatidelia (Trichoptera, Apataniidae) from China
Fig. 3. Apatidelia morsei Xu & Sun sp. nov. A. Fore wing venation. B. Hind wing venation. Scale bar = 0.5 mm.
Supplementary material 1 from: Strzałka B, Jankowiak R, Bilański P, Patel N, Hausner G, Linnakoski R, Solheim H (2020) Two new species of Ophiostomatales (Sordariomycetes) associated with the bark beetle Dryocoetes alni from Poland. MycoKeys 68: 23-48. https://doi.org/10.3897/mycokeys.68.50035
Tables S1–S3
Figure 6 from: Strzałka B, Jankowiak R, Bilański P, Patel N, Hausner G, Linnakoski R, Solheim H (2020) Two new species of Ophiostomatales (Sordariomycetes) associated with the bark beetle Dryocoetes alni from Poland. MycoKeys 68: 23-48. https://doi.org/10.3897/mycokeys.68.50035
Figure 6 Leptographium alneum sp. nov. (CBS 144901) aDryocoetes alni-infested Populus tremula tree b galleries of D. alni with ascomata c ascoma d ascomatal base e ascospores f ostiolar hyphae g–i conidiophores, black arrow indicates barrel-shaped cells j conidiogenous k conidia l club-shape cells m fourteen-day-old culture on MEA. Scale bars: 50 μm (c), 25 μm (d), 10 μm (e), 10 μm (f), 25 μm (g), 25 μm (h), 50 μm (i), 10 μm (j), 10 μm (k), 50 μm (l).
Figure 5 from: Strzałka B, Jankowiak R, Bilański P, Patel N, Hausner G, Linnakoski R, Solheim H (2020) Two new species of Ophiostomatales (Sordariomycetes) associated with the bark beetle Dryocoetes alni from Poland. MycoKeys 68: 23-48. https://doi.org/10.3897/mycokeys.68.50035
Figure 5 Ceratocystiopsis synnemata sp. nov. (NRIF 16918DA=KFL 16918DA) a, b micronematous conidiophores c–e macronematous conidiophores f, g conidiophores aggregate in synnematah conidia i fourteen-day-old culture on MEA. Scale bars: 25 μm (a), 10 μm (b), 25 μm (c–g), 10 μm (h).
Figure 4 from: Strzałka B, Jankowiak R, Bilański P, Patel N, Hausner G, Linnakoski R, Solheim H (2020) Two new species of Ophiostomatales (Sordariomycetes) associated with the bark beetle Dryocoetes alni from Poland. MycoKeys 68: 23-48. https://doi.org/10.3897/mycokeys.68.50035
Figure 4 Phylogram obtained from Maximum Likelihood (ML) analyses of the combined datasets of ITS1-5.8S-ITS2-28S+ACT+TUB2+TEF1-α for selected species of Leptographiumsensu lato. Sequences obtained during this study are presented in bold type. The Bootstrap values ≥ 75% for ML and Maximum Parsimony (MP) analyses are presented at nodes as follows: ML/MP. Bold branches indicate posterior probabilities values ≥ 0.95 obtained from Bayesian Inference (BI) analyses. * Bootstrap values <75%. The tree is drawn to scale (see bar) with branch length measured in the number of substitutions per site. Leptographium flavum and L. vulnerum represents the outgroup in analyses of the combined datasets of ITS1-5.8S-ITS2-28S+ACT+TUB2+TEF1-α.
Figure 1 from: Strzałka B, Jankowiak R, Bilański P, Patel N, Hausner G, Linnakoski R, Solheim H (2020) Two new species of Ophiostomatales (Sordariomycetes) associated with the bark beetle Dryocoetes alni from Poland. MycoKeys 68: 23-48. https://doi.org/10.3897/mycokeys.68.50035
Figure 1 Phylogram obtained from Maximum Likelihood (ML) analyses of the ITS1-5.8S-ITS2-28S data for the Ceratocystiopsis spp. Sequences obtained during this study are presented in bold type. The Bootstrap values ≥ 75% for ML and Maximum Parsimony (MP) analyses are presented at nodes as follows: ML/MP. Bold branches indicate posterior probabilities values ≥ 0.95 obtained from Bayesian Inference (BI) analyses. * Bootstrap values <75%. The tree is drawn to scale (see bar) with branch length measured in the number of substitutions per site. Ophiostoma karelicum and Ophiostoma quercus represent the outgroup.
Figure 3 from: Strzałka B, Jankowiak R, Bilański P, Patel N, Hausner G, Linnakoski R, Solheim H (2020) Two new species of Ophiostomatales (Sordariomycetes) associated with the bark beetle Dryocoetes alni from Poland. MycoKeys 68: 23-48. https://doi.org/10.3897/mycokeys.68.50035
Figure 3 Phylogram obtained from Maximum Likelihood (ML) analyses of the ITS2-28S for selected species of Leptographiumsensu lato. Sequences obtained during this study are presented in bold type. The Bootstrap values ≥ 75% for ML and Maximum Parsimony (MP) analyses are presented at nodes as follows: ML/MP. Bold branches indicate posterior probabilities values ≥ 0.95 obtained from Bayesian Inference (BI) analyses. * Bootstrap values <75%. The tree is drawn to scale (see bar) with branch length measured in the number of substitutions per site. Ophiostoma karelicum and O. quercus represents the outgroup in analyses of ITS2-28S.
Figure 2 from: Strzałka B, Jankowiak R, Bilański P, Patel N, Hausner G, Linnakoski R, Solheim H (2020) Two new species of Ophiostomatales (Sordariomycetes) associated with the bark beetle Dryocoetes alni from Poland. MycoKeys 68: 23-48. https://doi.org/10.3897/mycokeys.68.50035
Figure 2 Phylogram obtained from Maximum Likelihood (ML) analyses of TUB2 data for the Ceratocystiopsis spp. Sequences obtained during this study are presented in bold type. The Bootstrap values ≥ 75% for ML and Maximum Parsimony (MP) analyses are presented at nodes as follows: ML/MP. Bold branches indicate posterior probabilities values ≥ 0.95 obtained from Bayesian Inference (BI) analyses. * Bootstrap values <75%. The tree is drawn to scale (see bar) with branch length measured in the number of substitutions per site.
Combining genome-wide studies of breast, prostate, ovarian and endometrial cancers maps cross-cancer susceptibility loci and identifies new genetic associations
<p>Data set linked to the paper, "Combining genome-wide studies of breast, prostate, ovarian and endometrial cancers maps cross-cancer susceptibility loci and identifies new genetic associations". Pre-print of the paper is here: <a href="https://doi.org/10.1101/2020.06.16.146803">https://doi.org/10.1101/2020.06.16.146803</a>.</p> <p> </p> <p>cross_cancer_sum_stats.txt.gz contains summary genome-wide association statistics for susceptibility to single cancers (breast (BR), prostate (PR), ovarian (OV), endometrial (EN), estrogen receptor (ER)-positive breast (POS), ER-negative breast (NEG), and high-grade serous ovarian (HGS) cancers) and from the cross-cancer meta-analysis (main [main] and subtype-focused [sub]). EA in the header refers to the effect allele, OA is the other allele, EAF is the effect allele frequency in the largest of the single cancer data sets (BR), IMPR2 is the imputation quality in the largest of the single cancer data sets (BR), SE is the standard error, PVAL is the P-value, RE2Cs1 is the RE2C statistic mean effect part, RE2Cs2 is the RE2C statistic heterogeneity part, RE2Cp* is the RE2C* P-value. More on RE2Cp* can be found here: <a href="http://software.buhmhan.com/RE2C/index.php?mid=contact&act=dispBoardWrite">http://software.buhmhan.com/RE2C/index.php?mid=contact&act=dispBoardWrite</a> and in <a href="https://academic.oup.com/bioinformatics/article/33/14/i379/3953957">https://academic.oup.com/bioinformatics/article/33/14/i379/3953957</a> SNP names in cross_cancer_sum_stats.txt.gz include the chromosome and build 37 position.</p> <p> </p> <p>main_tetrachoric_corr_matrix.txt and subtype_tetrachoric_corr_matrix.txt provide the tetrachoric correlation matrices used in the main and subtype-focused meta-analyses. These were also used to specify the cryptic.cor argument of the exh.abf function of MetABF. More on MetABF can be found here: <a href="https://github.com/trochet/metabf">https://github.com/trochet/metabf</a> and in <a href="https://onlinelibrary.wiley.com/doi/abs/10.1002/gepi.22202">https://onlinelibrary.wiley.com/doi/abs/10.1002/gepi.22202</a></p> <p> </p> <p>prior_sigmas_for_metabf.txt contains the values used to specify the prior.sigma argument of the exh.abf function in MetABF.</p> <p> </p> <p>The breast cancer data used are described in <a href="https://pubmed.ncbi.nlm.nih.gov/29059683/"><strong>PMID 29059683</strong></a> and can be downloaded from <a href="http://bcac.ccge.medschl.cam.ac.uk/bcacdata/oncoarray/oncoarray-and-combined-summary-result/gwas- summary-results-breast-cancer-risk-2017/">http://bcac.ccge.medschl.cam.ac.uk/bcacdata/oncoarray/oncoarray-and-combined-summary-result/gwas- summary-results-breast-cancer-risk-2017/</a> (this link also includes acknowledgements). The prostate cancer data are described in <a href="https://pubmed.ncbi.nlm.nih.gov/29892016/"><strong>PMID 29892016</strong></a> and can be downloaded from: <a href="http://practical.icr.ac.uk/blog/?page_id=8164">http://practical.icr.ac.uk/blog/?page_id=8164</a> (this link also includes acknowledgements). The ovarian cancer data used are described in <a href="https://pubmed.ncbi.nlm.nih.gov/28346442/"><strong>PMID 28346442</strong></a> and can be downloaded from <a href="https://www.ebi.ac.uk/gwas/studies/GCST004415">https://www.ebi.ac.uk/gwas/studies/GCST004415</a>. The endometrial cancer data are described in <a href="https://pubmed.ncbi.nlm.nih.gov/30093612/"><strong>PMID 30093612</strong></a> and can be downloaded from <a href="https://www.ebi.ac.uk/gwas/studies/GCST006464">https://www.ebi.ac.uk/gwas/studies/GCST006464</a>. These links point to the same data that form the basis of the cross_cancer_sum_stats.txt.gz file.</p> <p> </p> <p><strong>The sample size and precision of the data presented should preclude identification of any individual study participant. However, in downloading these data, you undertake not to attempt to identify individual study participant and not to re-post these data to a third-party website. Please cite the PMIDs highlighted above along with the appropriate acknowledements if you use the cross_cancer_sum_stats.txt.gz file.</strong></p> <p> </p> <p>If you have any questions about this repository, please email Siddhartha Kar at siddhartha dot kar at bristol dot ac dot uk</p>
FIGURE 1 in Two new species of Cryptopontius Giesbrecht, 1899 (Copepoda, Siphonostomatoida Artotrogidae) associated with invertebrates from Northeastern Brazil
FIGURE 1. Sampling site in Periperi Beach, Todos-os-Santos Bay, Salvador, Bahia, Brazil.
Figure 3 from: Jia R-R, Lv S-L, Chai C-Y, Hui F-L (2020) Three new Scheffersomyces species associated with insects and rotting wood in China. MycoKeys 71: 87-99. https://doi.org/10.3897/mycokeys.71.56168
Figure 3 Morphology of S. paraergatensis. A budding cells B ascus and ascospores. Scale bars: 10 μm.
Figure 1 from: Jia R-R, Lv S-L, Chai C-Y, Hui F-L (2020) Three new Scheffersomyces species associated with insects and rotting wood in China. MycoKeys 71: 87-99. https://doi.org/10.3897/mycokeys.71.56168
Figure 1 Maximum parsimony phylogenetic tree generated from analysis of combined ITS and nrLSU sequences dataset for 24 taxa of Scheffersomyces and related Candida species. Saccharomyces cerevisiae CBS 1171T is the out-group taxon. Bootstrap values ≥ 50% for MP/ML analyses are presented at the branches. Scale bar = 20 nucleotide substitutions. The species from this study are indicated in bold letters.
Supplementary material 1 from: Elsayed AK, Skuhravá M, Ohta K, Yoshida S, Tokuda M (2020) Revision of the birch-associated genus Massalongia (Diptera, Cecidomyiidae), with description of a new species from Japan and a taxonomic key to worldwide species. ZooKeys 958: 1-27. https://doi.org/10.3897/zookeys.958.54300
Video S1
Figures 25-29 from: Elsayed AK, Skuhravá M, Ohta K, Yoshida S, Tokuda M (2020) Revision of the birch-associated genus Massalongia (Diptera, Cecidomyiidae), with description of a new species from Japan and a taxonomic key to worldwide species. ZooKeys 958: 1-27. https://doi.org/10.3897/zookeys.958.54300
Figures 25-29 Massalongia bachmaieri. 25 ventral view of mouthparts 26 ventral view of female flagellomere V. 27 ventral view of male flagellomere III 28 wing 29 tarsomere V and acromere. Scale bars: 50 µm.
Figures 33-35 from: Elsayed AK, Skuhravá M, Ohta K, Yoshida S, Tokuda M (2020) Revision of the birch-associated genus Massalongia (Diptera, Cecidomyiidae), with description of a new species from Japan and a taxonomic key to worldwide species. ZooKeys 958: 1-27. https://doi.org/10.3897/zookeys.958.54300
Figures 33-35 Massalongia bachmaieri. 33 male terminalia 34 ventral view of gonostylus 35 ventral view of male hypoproct and aedeagus. Scale bars: 50 µm.
Figures 30-32 from: Elsayed AK, Skuhravá M, Ohta K, Yoshida S, Tokuda M (2020) Revision of the birch-associated genus Massalongia (Diptera, Cecidomyiidae), with description of a new species from Japan and a taxonomic key to worldwide species. ZooKeys 958: 1-27. https://doi.org/10.3897/zookeys.958.54300
Figures 30-32 Massalongia bachmaieri.30–31 terminal part of female abdomen (arrow in Fig. 31 indicate the dorsal sclerite on the protrusible portion) 32 protrusible portion of ovipositor. Scale bars: 50 µm.
Figures 14-18 from: Elsayed AK, Skuhravá M, Ohta K, Yoshida S, Tokuda M (2020) Revision of the birch-associated genus Massalongia (Diptera, Cecidomyiidae), with description of a new species from Japan and a taxonomic key to worldwide species. ZooKeys 958: 1-27. https://doi.org/10.3897/zookeys.958.54300
Figures 14-18 Massalongia nakamuratetsui sp. nov. 14 terminal part of female abdomen (arrow indicate the dorsal sclerite on the protrusible portion) 15 protrusible portion of ovipositor 16 male terminalia 17 ventral view of gonostylus 18 ventral view of male hypoproct. Scale bars: 50 µm.
Figures 19-21 from: Elsayed AK, Skuhravá M, Ohta K, Yoshida S, Tokuda M (2020) Revision of the birch-associated genus Massalongia (Diptera, Cecidomyiidae), with description of a new species from Japan and a taxonomic key to worldwide species. ZooKeys 958: 1-27. https://doi.org/10.3897/zookeys.958.54300
Figures 19-21 Pupa of Massalongia nakamuratetsui sp. nov. 19 ventral view of head 20 prothoracic spiracle 21 dorsal view of terminal part of abdomen (arrows indicate dorsal spines). Scale bars: 50 µm.
Figures 22-24 from: Elsayed AK, Skuhravá M, Ohta K, Yoshida S, Tokuda M (2020) Revision of the birch-associated genus Massalongia (Diptera, Cecidomyiidae), with description of a new species from Japan and a taxonomic key to worldwide species. ZooKeys 958: 1-27. https://doi.org/10.3897/zookeys.958.54300
Figures 22-24 Larva of Massalongia nakamuratetsui sp. nov. 22 spatula 23 ventral view of terminal abdominal segments 24 dorsal view of terminal abdominal segments. Scale bars: 50 µm.
Figures 12-13 from: Elsayed AK, Skuhravá M, Ohta K, Yoshida S, Tokuda M (2020) Revision of the birch-associated genus Massalongia (Diptera, Cecidomyiidae), with description of a new species from Japan and a taxonomic key to worldwide species. ZooKeys 958: 1-27. https://doi.org/10.3897/zookeys.958.54300
Figures 12-13 Terminal part of female abdomen of Massalongia nakamuratetsui sp. nov. 12 dorso-lateral view 13 ventro-lateral view. Scale bars: 50 µm.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.