Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
1,298
datasets available to search
ShareScore release 0.9.0
Dataset results
1,298 results for “Archive”
FIGURE 31 in An inordinate fondness for inconspicuous brown frogs: integration of phylogenomics, archival DNA analysis, morphology, and bioacoustics yields 24 new taxa in the subgenus Brygoomantis (genus Mantidactylus) from Madagascar
FIGURE 31. Mantidactylus steinfartzi sp. nov. in life, in dorsolateral and ventral view. (a,b) Adult male (photos not corresponding to a voucher in ZSM; possibly deposited in UADBA or MRSN) from Antsahamanara Campsite, Manarikoba Forest, Tsaratanàna Massif, photographed in 2001. Note the relatively small-sized femoral glands, and lower amount of dark pigmentation on throat, compared to its sympatric sister species, M. schulzi (compare Fig. 29; small size possibly due to age effects, given that the holotype of M. steinfartzi sp. nov. has relatively large femoral glands).
FIGURE 43 in An inordinate fondness for inconspicuous brown frogs: integration of phylogenomics, archival DNA analysis, morphology, and bioacoustics yields 24 new taxa in the subgenus Brygoomantis (genus Mantidactylus) from Madagascar
FIGURE 43. Audiospectrogram and corresponding oscillogram of a 1000 ms section of a series of advertisement calls (11 calls displayed) of Mantidactylus katae, recorded on 17 December 1994 at Andasibe (ca 20°C air temperature). Recording bandpassfiltered at 500–6000 Hz.
FIGURE 32 in An inordinate fondness for inconspicuous brown frogs: integration of phylogenomics, archival DNA analysis, morphology, and bioacoustics yields 24 new taxa in the subgenus Brygoomantis (genus Mantidactylus) from Madagascar
FIGURE 32. Audiospectrogram and corresponding oscillogram of one advertisement call of Mantidactylus steinfartzi sp. nov. (second call from a call group containing two calls), recorded on 4 February 2001 at Antsahamanara Campsite, Manarikoba forest, Tsaratanàna Strict Nature Reserve (20°C air temperature). Recording bandpass-filtered at 1500–5000 Hz.
FIGURE 11 in An inordinate fondness for inconspicuous brown frogs: integration of phylogenomics, archival DNA analysis, morphology, and bioacoustics yields 24 new taxa in the subgenus Brygoomantis (genus Mantidactylus) from Madagascar
FIGURE 11. Mantidactylus alutus in life, in dorsolateral and ventral view. (a,b) Adult male from near Lake Mantasoa (ZSM 355/2000), photographed in 2000. (c,d) Adult male from near Antoetra (probably ZMA 19550 = FGMV 2002.50), photographed in 2003. (e) Adult male from Manjakatompo, photographed in 1991. (f) Specimen from Antakasina (this specimen has not been sequenced and its identification is therefore tentative; the locality is thus not included in the species account).
FIGURE 50 in An inordinate fondness for inconspicuous brown frogs: integration of phylogenomics, archival DNA analysis, morphology, and bioacoustics yields 24 new taxa in the subgenus Brygoomantis (genus Mantidactylus) from Madagascar
FIGURE 50. Audiospectrogram and corresponding oscillogram of three advertisement calls of Mantidactylus fergusoni, recorded on 21 December 2001 at Andranofotsy (25.4°C air temperature). Recording bandpass-filtered at 500–8000 Hz.
FIGURE 38 in An inordinate fondness for inconspicuous brown frogs: integration of phylogenomics, archival DNA analysis, morphology, and bioacoustics yields 24 new taxa in the subgenus Brygoomantis (genus Mantidactylus) from Madagascar
FIGURE 38. Specimens assigned to Mantidactylus tripunctatus in life, in dorsolateral view. (a) Probably adult male (based on large tympanum size) from Pic St Louis near Tolagnaro, photographed in 1991. (b) Probably adult male (based on large tympanum size) from Nahampoana, photographed in 1991.
FIGURE 42 in An inordinate fondness for inconspicuous brown frogs: integration of phylogenomics, archival DNA analysis, morphology, and bioacoustics yields 24 new taxa in the subgenus Brygoomantis (genus Mantidactylus) from Madagascar
FIGURE 42. Mantidactylus katae sp. nov. in life, in dorsolateral and ventral view. (a,b) Adult male from Andasibe, photographed in 1995. (c,d) Adult male from An'Ala, photographed in 1996. (e,f) Adult male from Ranomafana, photographed in 2003. Note the large femoral glands, with distal ulcerous macroglands of opposite thighs almost contacting each other medially, which constitutes the main morphological diagnostic character compared to the often syntopic M. betsileanus.
FIGURE 41 in An inordinate fondness for inconspicuous brown frogs: integration of phylogenomics, archival DNA analysis, morphology, and bioacoustics yields 24 new taxa in the subgenus Brygoomantis (genus Mantidactylus) from Madagascar
FIGURE 41. Audiospectrogram and corresponding oscillogram of a 1000 ms section of one advertisement call (call curation 1530 ms) of Mantidactylus jonasi sp. nov., recorded on 20 June 2009 at the western slope of the Makira Massif (air temperature estimated at 20–25°C). Recording bandpass-filtered at 900–6000 Hz.
FIGURE 33 in An inordinate fondness for inconspicuous brown frogs: integration of phylogenomics, archival DNA analysis, morphology, and bioacoustics yields 24 new taxa in the subgenus Brygoomantis (genus Mantidactylus) from Madagascar
FIGURE 33. Preserved holotype specimens of newly named species in the M. betsileanus clade. Scale bars equal 5 mm.
FIGURE 39 in An inordinate fondness for inconspicuous brown frogs: integration of phylogenomics, archival DNA analysis, morphology, and bioacoustics yields 24 new taxa in the subgenus Brygoomantis (genus Mantidactylus) from Madagascar
FIGURE 39. Audiospectrogram and corresponding oscillogram of a 1000 ms section of one advertisement call (call duration 1545 ms) of Mantidactylus tripunctatus, recorded February 1991 near Tolagnaro. Recording bandpass-filtered at 1200–4100 Hz.
FIGURE 34 in An inordinate fondness for inconspicuous brown frogs: integration of phylogenomics, archival DNA analysis, morphology, and bioacoustics yields 24 new taxa in the subgenus Brygoomantis (genus Mantidactylus) from Madagascar
FIGURE 34. Mantidactylus betsileanus in life, in anterior, dorsolateral, and ventral view. (a,b,c) Adult male from Andasibe, photographed in 1991. (d) Adult male from Andasibe, photographed in situ in a small cavity next to a swamp where it was emitting its call, photographed in 1991. (e,f) Adult male from Mahasoa, photographed in 2008. (g,h) Adult male from Andasibe, photographed in 1995. Note in the ventral views the relatively small femoral glands, with the distal ulcerous macroglands placed at considerable distances from each other, which constitutes a typical character state of this species; and in the frontal view (a), the white dot on the snout tip which is typical for this and several allied species.
FIGURE 10 in An inordinate fondness for inconspicuous brown frogs: integration of phylogenomics, archival DNA analysis, morphology, and bioacoustics yields 24 new taxa in the subgenus Brygoomantis (genus Mantidactylus) from Madagascar
FIGURE 10. Mantidactylus curtus in life, in dorsolateral and ventral view. (a,b) Female specimen (ZSM 768/2001 = FGMV 2001.489) from Itremo, photographed in 2001 (note the almost complete absence of femoral glands). (c,d) Probable female (note small femoral glands) from Antoetra, photographed in 2003. (e,f), Probable female (ZSM 758/2001 = FGMV 2001.423; note rather small femoral glands) from Mount Ibity/Col des Tapias, photographed in 2001.
FIGURE 8 in An inordinate fondness for inconspicuous brown frogs: integration of phylogenomics, archival DNA analysis, morphology, and bioacoustics yields 24 new taxa in the subgenus Brygoomantis (genus Mantidactylus) from Madagascar
FIGURE 8. Heat map of Brygoomantis species distribution overlap (plotted as minimum convex polygons). This map is only based on species that are recorded from more than two localities (i.e. those for which a polygon could be plotted).
FIGURE 4 in An inordinate fondness for inconspicuous brown frogs: integration of phylogenomics, archival DNA analysis, morphology, and bioacoustics yields 24 new taxa in the subgenus Brygoomantis (genus Mantidactylus) from Madagascar
FIGURE 4. Network based on sequences of the nuclear-encoded Rag-1 gene (alignment length 351 bp) from 265 specimens of Brygoomantis. The network was built from phased alleles, i.e. each sample is represented twice. The size of circles is proportional to the number of sequences with the same allele. Small black dots represent hypothetical haplotypes (not sampled or extinct) separating sampled haplotypes, when they differ by more than one mutational step.
FIGURE 7 in An inordinate fondness for inconspicuous brown frogs: integration of phylogenomics, archival DNA analysis, morphology, and bioacoustics yields 24 new taxa in the subgenus Brygoomantis (genus Mantidactylus) from Madagascar
FIGURE 7. Mantidactylus subgenus Brygoomantis species distribution based on verified records, divided by clade (Mantidactylus stelliger sp. nov. is presented alongside the inaudax clade for practicality). Colours for species correspond to those in Figs 2 and 4. Inset map shows the geographic regions of Madagascar identified by Boumans et al. (2007), referred to throughout the text.
FIGURE 6 in An inordinate fondness for inconspicuous brown frogs: integration of phylogenomics, archival DNA analysis, morphology, and bioacoustics yields 24 new taxa in the subgenus Brygoomantis (genus Mantidactylus) from Madagascar
FIGURE 6. Overview of morphometrics of Mantidactylus (Brygoomantis) species. Points and boxplots are coloured by sex (purple = female, blue = male), with sample size per sex given beside the taxon names. Species are arranged according to the main clades to which they belong according to our phylogenomic analysis. SVL is repeated in the upper and lower panels to enable the reader to access relevant information quickly.
FIGURE 5 in An inordinate fondness for inconspicuous brown frogs: integration of phylogenomics, archival DNA analysis, morphology, and bioacoustics yields 24 new taxa in the subgenus Brygoomantis (genus Mantidactylus) from Madagascar
FIGURE 5. Maximum-Likelihood tree based on a partitioned analysis of 12,818 nuclear-encoded markers obtained via the FrogCap strategy, calculated with IQ-tree, for 58 representative individuals of species-level lineages in the subgenus Mantidactylus (Brygoomantis). Note that three species are missing from this analysis (M. bletzae sp. nov., M. marintsoai sp. nov., and M. riparius sp. nov.) and the identity of the two samples of M. katae sp. nov. in this tree is uncertain. For those lineages that previously (Perl et al. 2014; Vieites et al. 2009) had candidate species numbers assigned, these are reported in parenthesis after the name used in the classification proposed herein. All branches were fully supported by SH-like approximate likelihood ratio tests with 1000 pseudoreplicates (100% support, symbolized by black dots at nodes). The tree was rooted with Mantidactylus grandidieri (subgenus Mantidactylus) as outgroup (removed from graphical representation for better visualization of ingroup relationships), with the inclusion of M. melanopleura (subgenus Chonomantis) as hierarchical outgroup. Red arrows in the M. curtus clade indicate the two reticulation events detected by a Phylonetworks analysis performed separately for this clade (note that the topology recovered by this analysis in the Phylonetworks analysis differs in the position of M. bourgati; see original results of the Phylonetworks analysis in Zenodo repository, DOI 10.5281/zenodo.668741
FIGURE 2 in An inordinate fondness for inconspicuous brown frogs: integration of phylogenomics, archival DNA analysis, morphology, and bioacoustics yields 24 new taxa in the subgenus Brygoomantis (genus Mantidactylus) from Madagascar
FIGURE 2. Maximum Likelihood tree of 1305 sequences of a fragment of the 16S rRNA gene (alignment length 519 bp) from a RAxML analysis. Numbers at nodes are bootstrap proportions in percent (100 ML fast bootstrap replicates); not shown if <50%. A sequence of Mantidactylus melanopleura was used as the outgroup (removed from the tree after analysis for better graphical representation). Note that some of the 'Museomics' sequences (obtained by targeted capture from historical type specimens) are represented twice, after assembly with different reference sequences. Some sequences in the analysis (several 'Museomics' sequences as well as others obtained from Illumina sequencing) only partially covered the fragment analysed (226 sequences <300 bp). We emphasize that this tree is based on a single short mitochondrial marker and therefore is unlikely to represent the deep relationships among lineages correctly; for such relationships, refer to the phylogenomic tree (Fig. 5).
FIGURE 1 in An inordinate fondness for inconspicuous brown frogs: integration of phylogenomics, archival DNA analysis, morphology, and bioacoustics yields 24 new taxa in the subgenus Brygoomantis (genus Mantidactylus) from Madagascar
FIGURE 1. Graphic scheme indicating (a) regions of the body and (b) morphometrics measurements of Mantidactylus specimens of the subgenus Brygoomantis (exemplified by a specimen of M. ulcerosus), as referred to in the descriptions of morphology and tables throughout the manuscript. Labels in (a) refer to regions of the body and not necessarily to anatomical features. Femoral gland terminology as explained in the text. Measurement abbreviations in (b) are explained in the text; FORL (stretched forelimb length), HIL (stretched hindlimb length), and FOTL (foot length including tarsus) are not shown.
FIGURE 3 in An inordinate fondness for inconspicuous brown frogs: integration of phylogenomics, archival DNA analysis, morphology, and bioacoustics yields 24 new taxa in the subgenus Brygoomantis (genus Mantidactylus) from Madagascar
FIGURE 3. Distribution of uncorrected pairwise genetic distances for a fragment of the mitochondrial 16S rRNA gene, in an alignment of 976 sequences, complete or almost complete for 488 bp.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.