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5,805 results for “Data model”
Bibliographic dataset based on Scientometrics, containing provenance information compliant with the OpenCitations Data Model and non disambigued authors
<p>The dataset contains bibliographical information about scholarly works in the journal Scientometrics only if the DOI is known. The data was extracted via Crossref. It is a temporal dataset in which provenance information and change-tracking have been managed by adopting the OpenCitations Data Model. Moreover, the dataset contains information on all the cited academic works. Journals and bibliographic resources always appear unambiguously, without duplicates. On the contrary, the authors have not been disambigued. Finally, heuristics have been applied to recover the DOI of the cited works in case Crossref did not provide such information.</p>
Data base of cycles 1 and 2 of biometric variables of fuzzy model for assessing the development of the radish crop
<p>This data represent the fuzzy model developed of a Rule-Based System (RBS) to evaluation the development of the radish crop in two production cycles, for the irrigation depth at 100% of evapotranspiration. This RBS represents the function <span class="math-tex">\(f:\mathbb{R}\rightarrow\mathbb{R}^{10}\)</span>, where the domain is represented by the Days After Sowing (DAS), and counterdomain is represented by the ten biometric variables, denominated: Number of Leaves (NL), Root Length (RL), Bulb Diameter (BD), Bulb Length (BL), Green Root Weight (GRW), Green Leaf Weight (GLW), Green Bulb Weight (GBW), Dry Root Weight (DRW), Dry Leaf Weight (DLW). </p>
Supplementary data for "Are elevated moist layers a blind spot for hyperspectral infrared sounders? - A model study"
<p>This is the base data for the retrieval of water vapor, temperature and surface temperature based on forward simulated IASI measurements in the spectral bands between 1190-1400 and 645-800 cm-1, as well as 5 channels in the atmospheric window between 901.5 and 1115.75 cm-1.</p> <p>The data includes 1599 atmospheric states over tropical ocean regions, which is a subset of the ECMWF IFS diverse profile database with focus on a broad sampling of humidity states, published by Eresmaa et al. (2014). The full dataset is also available as part of the ARTS (Atmospheric Radiative Transfer Simulator) XML database (https://radiativetransfer.org/tools/). The data also includes the forward modelled spectra in units of brightness temperatures and the associated spectral frequency grid. ARTS is used as the forward model (https://radiativetransfer.org).</p> <p>This dataset is supplementary to the article "Are elevated moist layers a blind spot for hyperspectral infrared sounders? - A model study" that has been submitted to Atmospheric Measurement Techniques (AMT).</p>
Modelled isoscape data for: "Oceanographic and biogeochemical drivers cause divergent trends in the nitrogen isoscape in a changing Arctic Ocean"
<p>The data included in this repository includes the biogeochemical model output of nitrogen isotope fields. These data were generated by simulations with the NEMOv4.0 Ocean General Circulation Model, SI3 sea ice model, and Pelagic Interactions Scheme for Carbon and Ecosystem Studies version 2 (PISCESv2) biogeochemical model. Nitrogen isotopes were integrated within PISCESv2 for the purpoes of this study.</p> <p>All data here are in longitude, latitude and time cordinates. No depth coordinate is provided as all values are averaged over the upper 100 metres of the model.</p> <p> </p> <p>The file names mean the following:<br> </p> <p>ETOPO - refers to how the curvilinear, native grid of the model was re-gridded to a regular 360x180 longitude-latitude grid uisng the etopo60 coordinate system.</p> <p>JRA55 - these are the reanalysis-driven simulations, for which we used the Japanese Atmospheric Reanalysis (JRA55do).</p> <p>future - these are the emissions-driven simulations (historical from 1850-2005, then according to Representative Concentration Pathway 8.5 from 2006-2100.)</p> <p>picontrol - these are parallel to the emissions-driven simulations but do not include the increase in emissions.</p> <p>ndep - refers to if the historical increase in anthropogenic nitrogen deposition was included in the simulation</p> <p>d15Nno3 - isotopic composition of nitrate averaged over the upper 100 metres</p> <p>d15Npom - isotopic composition of particulate organic matter averaged over the upper 100 metres</p> <p>predictors - the average values of salinity, N* and particulate organic matter over the upper 100 metres</p> <p>annualave - annual averages, so that the data are inter-annual</p> <p>1970-1990ave_months - average monthy values over the period 1970-1990.</p>
Code and data for "KGML-ag: A Modeling Framework of Knowledge-Guided Machine Learning to Simulate Agroecosystems: A Case Study of Estimating N2O Emission using Data from Mesocosm Experiments "
<p>This is code and data for manuscript: <br> "KGML-ag: A Modeling Framework of Knowledge-Guided Machine Learning to Simulate Agroecosystems: <br> A Case Study of Estimating N<sub>2</sub>O Emission using Data from Mesocosm Experiments"<br> Licheng Liu, Shaoming Xu, Zhenong Jin*, Jinyun Tang, Kaiyu Guan, Timothy J. Griffis, <br> Matt D. Erickson, Alexander L. Frie, Xiaowei Jia, Taegon Kim, Lee T. Miller, Bin Peng, Shaowei Wu, Yufeng Yang, Wang Zhou, Vipin Kumar</p> <p>All the files belong to Prof. Zhenong Jin, University of Minnesota, UA. jinzn@umn.edu<br> "code" foler includes code for data processing, model training, and results plotting.<br> "trained_model_saved" includes all trained model so you can use to reproduce the results showed in the study;<br> "data" includes all data presented in the study. Finetuning data is refering to Miller, L.T. , Griffis, T. J., Erickson, M. D., Turner, P. A., Deventer, M. J., Chen, Z., Yu, Z., Venterea, R.T., Baker, J. M., and Frie, A. L. (2021). Response of nitrous oxide emissions to future changes in precipitation and individual rain events. Journal of Environmental Quality, In review</p>
Data for "On Ohm's law in reduced plasma fluid models"
<p>Simulation data and post-processing scripts to create the figures in the paper "On Ohm's law in reduced plasma fluid models", published in <em>Plasma Physics and Controlled Fusion</em>.</p> <p>To re-produce the figures, install the Python package `xbout` (using pip: `pip install xbout`; or conda: `conda install xbout`), unzip the file from this archive, and run the script `make_paper_figures.py`. Figure 1 is `finite_Ti_plots/compare-sims_baseall/CoM_midplane0.pdf`; figure 2a is `finite_Ti_plots/compare-sims_base/timestep.pdf`; figure 2b is `finite_Ti_plots/compare-sims_base/rhs_evals.pdf`.</p>
Initial Evaluation Data for SimIMA: A Virtual Simulink Intelligent Modeling Assistant
<p>The following is our initial dataset and evaluation materials corresponding to our development and evaluation of the <a href="https://zenodo.org/record/5123570">Simulink Intelligent Modeling Assistant (SimIMA)</a>. </p> <p>We evaluate SimGestion and SimXample separately. </p> <ul> <li>The directory SimGestion-evaluation contains datasets, evaluation scripts, and log files involved in the evaluation of SimGestion. </li> <li>The directory SimXample-evaluation contains datasets, evaluation scripts, and log files involved in the evaluation of SimXample. </li> </ul> <p>This is v1.0, which is the evaluation associated with the thesis "INTELLIGENT SIMULINK MODELING ASSISTANCE VIA MODEL CLONES AND MACHINE LEARNING" by Bhisma Adhikari @ Miami University , 2021. </p>
Raw data and heatmaps of VLP deposition modeling
<p>Supplementary Information and Raw Data for <a href="https://www.plus.ac.at/biowissenschaften/der-fachbereich/arbeitsgruppen/duschl/members/martin-himly/list-of-publications/">Hofstätter N., Hofer S., Duschl A., and Himly M.<br> Children’s privilege in COVID-19: The protective role of the juvenile lung morphometry and ventilatory pattern on airborne SARS-CoV-2 transmission and severe pulmonary disease (2021). <em>Biomedicines </em>9(10):1414.</a> DOI: <a href="https://doi.org/10.3390/biomedicines9101414">https://doi.org/10.3390/biomedicines9101414</a></p> <p>1. pdf of deposition heatmaps (incl probability values) for 4 different VLP count medium diameters and 3 different age groups upon nose breathing</p> <p>2. pdf of deposition heatmaps (incl probability values) for 4 different VLP count medium diameters and 3 different age groups upon mouth breathing</p> <p>3. xls-formatted file of MPPD-derived deposition raw data sets for 4 different VLP count medium diameters for age group 3 y upon nose breathing</p> <p>4. xls-formatted file of MPPD-derived deposition raw data sets for 4 different VLP count medium diameters for age group 3 y upon mouth breathing</p> <p>5. xls-formatted file of MPPD-derived deposition raw data sets for 4 different VLP count medium diameters for age group 8 y upon nose breathing</p> <p>6. xls-formatted file of MPPD-derived deposition raw data sets for 4 different VLP count medium diameters for age group 8 y upon mouth breathing</p> <p>7. xls-formatted file of MPPD-derived deposition raw data sets for 4 different VLP count medium diameters for age group 21 y upon nose breathing</p> <p>8. xls-formatted file of MPPD-derived deposition raw data sets for 4 different VLP count medium diameters for age group 21 y upon mouth breathing</p>
TIMES-Ireland model: Residential data
<p>This dataset is contained in a Tableau packaged workbook (.twbx) and uses Ireland's raw Building Energy Rating (BER) csv data, which is downloadable from https://ndber.seai.ie/BERResearchTool/ber/search.aspx and applies filters to this database. Tableau structures the filtered data, so that it can be exported into the residential file (VT_IE_RSD) for use in TIMES Ireland Model (TIM) </p>
Bibliographic dataset based on Scientometrics, including provenance information compliant with the OpenCitations Data Model
<p>The dataset contains bibliographical information about scholarly works in the journal Scientometrics only if the DOI is known. The data was extracted via Crossref. It is a temporal dataset in which provenance information and change-tracking have been managed by adopting the OpenCitations Data Model. Moreover, the dataset contains information on all the cited academic works. Journals, bibliographic resources, and authors always appear unambiguously, without duplicates. Finally, heuristics have been applied to recover the DOI of the cited works in case Crossref did not provide such information.</p> <p>The dataset is distributed as two journal files, one for the data and one for the provenance, readable via the triplestore Blazegraph. There are 4,960,087 data triples and 19,348,027 provenance triples, which corresponds to 1,134,545 entities and 2,696,689 snapshots. Therefore, on average, each entity has two snapshots. Among the data, there are 231,217 agent roles, 221,602 responsible agents, 206,003 bibliographic resources, 142,472 citations, 141,555 bibliographical references, 108,112 identifiers, and 83,584 resource embodiments.</p> <p>The code to generate and modify such collections is available at <a href="https://doi.org/10.5281/zenodo.5579754">https://doi.org/10.5281/zenodo.5579754</a>. </p>
Simulated data from abmAnimalMovement: An R package for simulating animal movement using an agent-based model
<p>Contained here are the data simulated as part of the manuscript: "abmAnimalMovement: An R package for simulating animal movement using an agent-based model" that can be found at: https://github.com/BenMMarshall/abmAnimalMovement (and archived at: https://doi.org/10.5281/zenodo.6951937).</p> <p>- BADGER_locations.csv: A csv file that contains the realised locations of the example badger simulation, where each row is equal to a timestep. Columns include: timestep, the timestep as an integer; x, the x coordinate of the animal; y, the y coordinate of the animal; sl, the step length between locations used during the simulation; sl_rescale the rescale factor required to return step lengths back to the input scale; ta, turning angle between locations in degrees; behave, the behavioural mode the animal was in at a given timestep; chosen, the location chosen out of the number of options available; destination_x and destination_y the point the animal was attracted to at that time (note exploratory behaviour is not subject attraction).</p> <p>- BADGER_options.csv: A csv file that contains the options available to the example badger simulation over the entire simulation duration, where each row is equal to an option repeated for each timestep. Columns include: timestep, the timestep as an integer; oall_x, and oall_y show the x and y coordinates of all the options available to an animal at a timestep; oall_steplengths are the step lengths from the current location compared to all the options.</p> <p>- completelist.RDS: This RDS file contains a list object of length three, where the full simulation outputs from each three examples are stored. Each species slot contains the “locations” dataframe (see description of locations.csv), the "options" dataframe (see description of options.csv), and a nested list containing all the "inputs" used to generate the simulated results (split into subsections: inputs_basic that contains inputs linked to simulation duration and intensity, inputs_destination that contains inputs linked to destination and attraction aspects, inputs_movement that contains inputs linked to movement capacity and behavioural switching, inputs_cycle that contains inputs linked to activity cycling, inputs_layerSeed that contains the environmental matrices and seed). A fourth object is returned called "others" that captures all other outputs, mainly used internally for debugging and checking.</p> <p>- KINGCOBRA_locations.csv: A csv file that contains the realised locations of the example king cobra simulation, where each row is equal to a timestep. The file structure follows the same as the BADGER_options.csv file.<br>KINGCOBRA_options.csv: A csv file that contains the options available to the example king cobra simulation over the entire simulation duration, where each row is equal to an option repeated for each timestep. The file structure follows the same as the BADGER_options.csv file.</p> <p>- VULTURE_locations.csv: A csv file that contains the realised locations of the example vulture simulation, where each row is equal to a timestep. The file structure follows the same as the BADGER_locations.csv file.<br>VULTURE_options.csv: A csv file that contains the options available to the example vulture simulation over the entire simulation duration, where each row is equal to an option repeated for each timestep. The file structure follows the same as the BADGER_locations.csv file.</p> <p>- eg_landscapedata_completelist.RDS: This RDS file contains the landscape matrices required for recreating the simulated outputs described in the manuscript named above. It is a list of three objects ("shelter", "forage", "movement"), each a numeric matrix of equal size, with values describing the quality of each landscape characteristic.</p> <p>- argument_table.csv: Descriptive table of the simulation inputs used in the walk-through manuscript.</p>
R code and data for "Flake selection and scraper retouch probability: an alternative model for explaining Middle Paleolithic assemblage retouch variability"
<p>R code and data used for "Flake selection and scraper retouch probability: an alternative model for explaining Middle Paleolithic assemblage retouch variability" (Archaeological and Anthropological Sciences, Volume 10, Issue 7, pp 1791–1806)</p>
Raw data from Qin et al. (2018) "Modeling the kinetics of hydrogen formation by zerovalent iron: Effects of sulfidation on micro- and nano-scale particles"
<p>Raw hydrogen concentration vs. time data from Qin, H., X. Guan, J. Z. Bandstra, R. L. Johnson, and P. G. Tratnyek (2018) “Modeling the kinetics of hydrogen formation by zerovalent iron: Effects of sulfidation on micro- and nano-scale particles” Environ. Sci. Technol. 52(23): 13887-13896. [10.1021/acs.est.8b04436]</p> <p>This manuscript reports a large set of new concentration vs. time data for dihydrogen (H2) produced by corrosion of granular zerovalent iron (i.e., the hydrogen evolution reaction, HER) in aqueous media relevant to groundwater remediation. Four alternative kinetic models are evaluated by fitting the data using global non-linear regression. Details are given in the main text and supporting information of the (open access) manuscript. </p> <p>The data provided here are in two formats: (i) a .csv file that contains only data and labels, and (ii) a .pxp file that includes the data and graphs (without fits) in the same layout as figures in the original manuscript. The .pxp file was prepared with Igor Pro 8.02 (https://www.wavemetrics.com).</p>
A compositional model of the Earth's mantle transition zone from SS and PP data
<p>This dataset provides the thermochemical model of the Earth's mantle transition zone obtained from the inversion of travel-times and amplitudes of seismic waves reflected at mineralogical phase transitions (PP and SS precursors).</p> <p>3 columns : latitude (degree), longitude (degree), potential temperature Tpot (Kelvin), basalt fraction (min 0.0, max 1.0)</p>
Data accompanying the article "Arctic sea ice mass balance in a new coupled ice-ocean model using a brittle rheology framework"
<p><em>Amonthly_files.tar.gz</em> contains the gridded monthly averaged quantities used in the manuscript Arctic sea ice mass balance in a new coupled ice-ocean model using a brittle rheology framework" for each year between 2000 and 2018.</p> <p>Files containing "simba" in their name contain quantities related to the sea ice mass balance (volume of melt/growth...)</p> <p>Files containing "icemod" in their name contain other quantities related to sea ice properties (thickness, concentration...)</p> <p>In case information is missing, do not hesitate to contact guillaume.boutin@nersc.no , heather.regan@nersc.no or einar.olason@nersc.no</p> <p>This research has been funded by the Norwegian Research Council (Nansen Legacy: grant no. 27673, FRASIL: grant no. 263044, and ARIA: grant no. 302934), JPI Climate and JPI Oceans (MEDLEY project, under agreement with the Norwegian Research Council, grant no 316730), and by Copernicus Marine Environment Monitoring Service (CMEMS) WIzARd project. CMEMS is implemented by Mercator Ocean in the framework of a delegation agreement with the European Union<br> Copernicus Marine Environment Monitoring Services (contract no.<br> 69), and the European Space Agency through the Cryosphere Virtual Laboratory (CVL, grant no. 4000128808/19/I-NS).</p>
Supporting Data -- Evaluating Mask R-CNN Models to Extract Terracing across Oceanic High Islands: an example from Sāmoa.
<p>This dataset provides supplemental information for the manuscript, "Diverse terracing practices revealed by automated lidar analysis across the Sāmoan islands", submitted to Archaeological Prospection. The dataset contains a trained Mask R-CNN deep learning model designed for detecting archaeological terracing features on the islands of American Samoa, associated training data, and the raw and cleaned output of detected terraces.</p>
Data for the publication "Addressing complexity in global aerosol climate model cloud microphysics"
<p>This repository contains the data for the paper:</p> <p>Authors: Ulrike Proske, Sylvaine Ferrachat, and Ulrike Lohmann<br> Titel: Addressing complexity in global climate model cloud microphysics<br> Date: 2022</p> <p>Note that the scripts can be found in the accompanying package (https://doi.org/10.5281/zenodo.7375978).</p>
Processed Synthetic Real-World Data for tristate modelling
<p>This model learning dataset is created out of the <a href="https://zenodo.org/record/7409763">Raw Synthetic RWD</a> raw dataset, including some of the original attributes. It is distributed in JOBLIB files, where .joblib files contain the vectors and _ids.joblib contain the ID of the person from which each vector is extracted.</p> <p>This is useful in case it is needed to map the vectors to metadata about the people that are found in the original raw dataset. Note that corresponds to , or , depending on the dataset.</p> <p>The split is roughly 60% of the people are in the training dataset, and 20% in each of the validation and the testing datasets. The input attributes are the age, the short-term averages and the trends of the current week’s BMI, steps walked, calories burned, sleep quality, mood and water consumption, as well as the previous week’s short-term average and trend of the answer to the health self-assessment question.</p> <p>The outcome to be predicted is a tristate quantized version of the health self-assessment answer to be given in the current week. The dataset is normalized based on the training set. The means and standard deviations used can be found in the train_statistics.joblib file. Finally, the output_descriptions.joblib file contains descriptions of the outcomes to be predicted (not actually needed, since included here).</p>
Processed Synthetic Real-World Data for binary modelling
<p>This model learning dataset is created out of the <a href="https://zenodo.org/record/7409763">Raw Synthetic RWD</a> raw dataset, including some of the original attributes. It is distributed in JOBLIB files, where .joblib files contain the vectors and _ids.joblib contain the ID of the person from which each vector is extracted.</p> <p>This is useful in case it is needed to map the vectors to metadata about the people that are found in the original raw dataset. Note that corresponds to , or , depending on the dataset. The split is roughly 60% of the people are in the training dataset, and 20% in each of the validation and the testing datasets. The input attributes are the age, the short-term averages and the trends of the current week’s BMI, steps walked, calories burned, sleep quality, mood and water consumption, as well as the previous week’s short-term average and trend of the answer to the health self-assessment question.</p> <p>The outcome to be predicted is the binary quantized health self-assessment answer to be given in the current week. The dataset is normalized based on the training set. The means and standard deviations used can be found in the train_statistics.joblib file. Finally, the output_descriptions.joblib file contains descriptions of the outcomes to be predicted (not actually needed, since included here).</p>
Atmospheric clumped O2 isotope composition simulation data and analysis scripts from EMAC/aMC models
<p>This publication contains source code, data and analysis scripts/results of the simulations presented in the following manuscript:</p> <blockquote> <p>Laskar, A.H., G.A. Adnew, S.S. Gromov, R. Peethambaran, B. Steil, J. Lelieveld, T. Blunier and T. Röckmann (2022). "Large variations in atmospheric oxidants and temperature during the Holocene" (in review)</p> </blockquote> <p> </p> <p><strong>EMAC simulations analysis</strong></p> <p>The analysis contains integrals of species burdens and other atmospheric physicochemical parameters obtained with the clumped isotopes of oxygen (CIO)-enabled ECHAM/MESSy Atmospheric Chemistry model (EMAC, see <a href="https://www.messy-interface.org">MESSy consortium website</a> for more information) model in various climate states. Simulations were performed in 2021–2022 at the <a href="https://www.dkrz.de">German Climate Computing Centre</a> (DKRZ) with the support of the <a href="https://www.palmod.de">PalMod project</a>.</p> <p>Analysis data is stored in human/machine-readable file <code>D36-EMAC-analysis.dat</code>, please refer to its header for variables description, etc.</p> <p>Additional (to those presented in the manuscript) analysis plots from EMAC data analysis are available in <code>D36-EMAC-analysis.vsz</code> (see the hardcopy in <code>D36-EMAC-analysis.pdf</code>) prepared using the <a href="https://veusz.github.io">Veusz</a> software.</p> <p> </p> <p><strong>2BM/MC (two-box Monte-Carlo) model code, simulation data and analysis</strong></p> <p>2BM/MC code/simulation setup is implemented within the advanced Monte-Carlo framework (aMC) and is available in the <a href="https://gitlab.com/sergey.gromov/amc/-/tree/vpCIO">respective repository</a>. A copy of the source code used to perform simulations is provided here (see <code>aMC-vpCIO.tar.gz</code> archive).</p> <p>2BM/MC output is stored in the <a href="https://www.unidata.ucar.edu/software/netcdf/">netCDF format</a> (ver. 4) and can be read in by any compatible software. The output contains probe statistics (reference <em>probed</em> distributions of the variables) in <code>vpCIO-probe_stat-*.nc</code> and resulting statistics (distributions <em>matching</em> given criteria, i.e. changes to the Δ36 signature vs. PD conditions) in <code>vpCIO-delta-*.nc</code> files, respectively.</p> <p>We use <a href="https://ferret.pmel.noaa.gov">NOAA Ferret</a> software to derive additional statistics of the third parameter (viz. average STE (<em>S</em>) changes) over the obtained 2D frequency histograms of other parameters (viz. changes to equilibration rate (<em>Req)</em> and temperature (<em>Teq</em>)). The scripts exemplifying this calculation are presented in <code>D36-vpCIO-analysis__proc*</code> files, which output results/overview plots in <code>vpCIO-delta-*__proc.nc</code> and <code>vpCIO-delta-*.gif</code> files.</p> <p>The analysis of the 2BM/MC simulation is available in <code>D36-vpCIO-analysis.vsz</code> script (see the hardcopy in <code>D36-vpCIO-analysis.pdf</code>) prepared using the <a href="https://veusz.github.io">Veusz</a> software. Note that some plots require the abovementioned third-parameter statistics as input.</p> <p><strong>Performing simulations with 2BM/MC</strong></p> <p>In order to perform simulations (e.g. with altered parameters), please follow the <a href="https://gitlab.com/sergey.gromov/amc/-/tree/vpCIO#integrating-your-code-building-executing">respective guide</a> for and build the <code>aMC-vpCIO</code> model. A typical sequence of shell commands to build and run 2BM/MC (which is referred to as <code>vpCIO</code> generic model within the <code>aMC</code>) is:</p> <pre><code># clone the distribution and check-out `vpCIO` branch or particular commit referenced in the repository history [user@pc]/~> git clone https://gitlab.com/sergey.gromov/amc.git [user@pc]/~> cd amc [user@pc]/~/amc> git checkout vpCIO # or unpack the source code available in this publication: [user@pc]/~> tar -xvf `aMC-vpCIO.tar.gz` [user@pc]/~> cd amc # build the aMC/vpCIO model executable # (note that you need at least a GCC or Intel compiler suite and respective netCDF v.4 library Fortran interface available in your environment): [user@pc]/~/amc> make vpCIO # adjust model setup (see the `vpCIO/amc.nml` namelist) ... # perform simulation [user@pc]/~/amc> cd vpCIO [user@pc]/~/amc/vpCIO> ./xamc # calculate additional statistics/produce overview with NOAA Ferret: [user@pc]/~/amc/vpCIO> ferret -gif -script D36-vpCIO-analysis__proc.jnl MH [user@pc]/~/amc/vpCIO> ./D36-vpCIO-analysis__proc</code></pre> <p>Note that output files contain the build timestamp and repository commit hash for the code used in the simulation, e.g.:</p> <pre><code>[user@pc]/~/amc/vpCIO> ncdump -h ./vpCIO-delta-dMH.nc | grep 'build' :build = "vpCIO@https://gitlab.com/sergey.gromov/amc__aMC_v1.9-110-g2566229@2022-12-09T16:43:12+01:00__built@2022-12-09T16:48:03+01:00__<user>@<email.com>" ;</code></pre> <p> </p> <p>Please contact Sergey Gromov ( sergey.gromov (at) mpic.de ) for additional information and access to the original experiment data.</p> <p> </p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.