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741 results for “Decay”
Substrate quality drives fungal necromass decay and decomposer community structure under contrasting vegetation types
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Data from: The effect of plant identity and the level of plant decay on molecular gut content analysis in a herbivorous soil insect
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How do species barriers decay? concordance and local introgression in mosaic hybrid zones of mussels
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Data from: Extensive trans-specific polymorphism at the mating type locus of the root decay fungus Heterobasidion
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Data from: Genetics of decayed sexual traits in a parasitoid wasp with endosymbiont-induced asexuality
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Data from: Fine root presence and increased phosphorus availability stimulate wood decay in a Central Amazonian rainforest
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Data from: Neutral and selection-driven decay of sexual traits in asexual stick insects
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Data from: Gauging scale effects and biogeographical signals in similarity distance decay analyses: an Early Jurassic ammonite case study
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Metabolic responses of two pioneer wood decay fungi to diurnally cycling temperature
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Data from: Horizontal gene acquisitions, mobile element proliferation, and genome decay in the host - restricted plant pathogen Erwinia tracheiphila
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Figure 1 from: Tennakoon DS, Thambugala KM, Jeewon R, Hongsanan S, Kuo C-H, Hyde KD (2019) Additions to Chaetothyriaceae (Chaetothyriales): Longihyalospora gen. nov. and Ceramothyrium longivolcaniforme, a new host record from decaying leaves of Ficus ampelas. MycoKeys 61: 91-109. https://doi.org/10.3897/mycokeys.61.47056
Figure 1 RAxML tree based on a combined dataset of ITS, LSU and SSU partial sequences of 45 taxa. Bootstrap support values for maximum likelihood (ML and, maximum parsimony (MP) values higher than 60 % and Bayesian posterior probabilities (BYPP) greater than 0.90 are given above each branch respectively. The new isolates are in red. Ex-type strains are in bold. The tree is rooted by Leptoxyphium fumago (CBS 123.26) and L. madagascariense (CBS 124766).
Figure 3 from: Tennakoon DS, Thambugala KM, Jeewon R, Hongsanan S, Kuo C-H, Hyde KD (2019) Additions to Chaetothyriaceae (Chaetothyriales): Longihyalospora gen. nov. and Ceramothyrium longivolcaniforme, a new host record from decaying leaves of Ficus ampelas. MycoKeys 61: 91-109. https://doi.org/10.3897/mycokeys.61.47056
Figure 3 Longihyalospora ampeli (MFLU 19-0824, holotype). a Host leaf b appearance of colony (black spots) on leaf c ring of setae around the pellicle d mycelial pellicle with setae e mycelial pellicle cells f, g vertical section through ascoma h section of peridium i–m asci n–r ascospores s ascospore stained in Indian ink showing a mucilaginous sheath. Scale bars: 100 µm (c), 75 µm (d), 20 µm (e, f), 50 µm (g), 10 µm (h), 50 µm (i–m), 20 µm (n–s).
Figure 2 from: Tennakoon DS, Thambugala KM, Jeewon R, Hongsanan S, Kuo C-H, Hyde KD (2019) Additions to Chaetothyriaceae (Chaetothyriales): Longihyalospora gen. nov. and Ceramothyrium longivolcaniforme, a new host record from decaying leaves of Ficus ampelas. MycoKeys 61: 91-109. https://doi.org/10.3897/mycokeys.61.47056
Figure 2 Ceramothyrium longivolcaniforme (MFLU19-0823, new host record). a, b Appearance of colony (black spots) on host leaf c mycelial pellicle d vertical section through ascoma e section of peridium f–i asci j–m ascospores n ascospore stained in Indian ink showing mucilaginous sheath o germinating ascospore p, q colony from above and below. Scale bars: 50 µm (d), 10 µm (e), 20 µm (f–i), 10 µm (j–o).
Figure 1 from: Xu X-L, Yang C-L, Jeewon R, Wanasinghe DN, Liu Y-G, Xiao Q-G (2020) Morpho-molecular diversity of Linocarpaceae (Chaetosphaeriales): Claviformispora gen. nov. from decaying branches of Phyllostachys heteroclada. MycoKeys 70: 1-17. https://doi.org/10.3897/mycokeys.70.54231
Figure 1 Phylogram of RAxML analysis based on a combined ITS, LSU, SSU and TEF-1α sequence dataset within order Chaetosphaeriales. Bootstrap support values for maximum likelihood (ML, left) greater than 70% and Bayesian posterior probabilities (PP, right) equal to or greater than 0.95 are indicated at the nodes. The tree is rooted to Gelasinospora tetrasperma (CBS 178.33) and Sordaria fimicola (CBS 508.50). All sequences from ex-type strains are in bold. The newly-generated sequence is in red.
Figure 2 from: Xu X-L, Yang C-L, Jeewon R, Wanasinghe DN, Liu Y-G, Xiao Q-G (2020) Morpho-molecular diversity of Linocarpaceae (Chaetosphaeriales): Claviformispora gen. nov. from decaying branches of Phyllostachys heteroclada. MycoKeys 70: 1-17. https://doi.org/10.3897/mycokeys.70.54231
Figure 2 Claviformispora phyllostachydis (SICAU 16-0007, holotype) a, bStromata on host substrate c section through ascoma with ascomata d ostiole with periphyses e peridium f paraphyses g–j asci k–o ascospores p germinated ascospore q, r colony on PDA after 7 days. Scale bars: 2 mm (a), 500 μm (b), 100 μm (c), 20 μm (d, e), 10 μm (f–p).
Supplementary material 1 from: Xu X-L, Yang C-L, Jeewon R, Wanasinghe DN, Liu Y-G, Xiao Q-G (2020) Morpho-molecular diversity of Linocarpaceae (Chaetosphaeriales): Claviformispora gen. nov. from decaying branches of Phyllostachys heteroclada. MycoKeys 70: 1-17. https://doi.org/10.3897/mycokeys.70.54231
Figure S1
Supplementary material 2 from: Xu X-L, Yang C-L, Jeewon R, Wanasinghe DN, Liu Y-G, Xiao Q-G (2020) Morpho-molecular diversity of Linocarpaceae (Chaetosphaeriales): Claviformispora gen. nov. from decaying branches of Phyllostachys heteroclada. MycoKeys 70: 1-17. https://doi.org/10.3897/mycokeys.70.54231
Figure S2
Fossil microbodies are melanosomes: evaluating and rejecting the 'fossilised decay-associated microbes' hypothesis
<p>Melanosomes are membrane-bound organelles of varying geometry, commonly found within a range of vertebrate tissues, that contain the pigment melanin. Melanosomes have been identified in the fossil record in many exceptionally preserved fossils allowing reconstructions of the coloration of many extinct animals. However, these microstructures have also been interpreted as "microbial cells" or melanin producing bacteria based on their geometric similarities to melanosomes. Here we test these two conflicting hypotheses experimentally. Our results demonstrate multiple lines of evidence that these fossil microbodies are indeed melanosomes: the geometry of decay-associated microbes differs significantly from fossil microbodies; fossil microbodies are very strongly localized to in vivo melanized tissues and are absent in tissues typically unmelanized in vivo, in all fossils examined regardless of lithology or age. On the basis of these results, as well as a thorough review of existing literature on melanin like pigments, we are able to rule out a bacterial origin for fossil microbodies and demonstrate that fossil microbodies associated with exceptional vertebrate fossils are in fact preserved melanosomes.</p>
Data and code from: Long-term effects of colonization-extinction dynamics of generalist versus specialist wodd-decaying fungi
<p>Data and scripts required to fit colonization-extinction models and to run simulations presented in Moor et al. 2020 J Ecol.</p> <p>Scripts use RData files; data is also available i CSV file format.</p>
Revealing the Social Aspects of Design Decay: A Retrospective Study of Pull Requests.
<p>Video presentation of the paper Revealing the Social Aspects of Design Decay: A Retrospective Study of Pull Requests for the SBES 2020.</p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.