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360
datasets available to search
ShareScore release 0.7.1
Dataset results
360 results for “Microbes”
Autophagy-overactivated composite microbe engineered from oncolytic adenoviruses for the cascade enhancement of cancer immunotherapy
GEO Series GSE225094. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing.
Integrated host-microbe metagenomics of cell-free nucleic acid for sepsis diagnosis in critically ill adults [plasma]
GEO Series GSE189401. Homo sapiens. 138 samples. Type: Expression profiling by high throughput sequencing.
Next Generation Sequencing and Quantitative Analysis of mRNAs in Wild-Type Caenorhabditis elegans Animals Consuming Kombucha Tea-assocaited Microbes
GEO Series GSE236037. Caenorhabditis elegans. 18 samples. Type: Expression profiling by high throughput sequencing.
RNAseq profilings of enteric neurons with microbe stimulations
GEO Series GSE164575. Mus musculus. 25 samples. Type: Expression profiling by high throughput sequencing.
Indigenous gut microbes modulate neural cell state and neurodegenerative disease susceptibility [5xFAD_CD11b+_Bulk_RNA-seq]
GEO Series GSE289590. Mus musculus. 12 samples. Type: Expression profiling by high throughput sequencing.
Protective microbes alter the transcriptional response of Caenorhabditis elegans nematodes to pathogenic infection
GEO Series GSE151731. Caenorhabditis elegans. 45 samples. Type: Expression profiling by high throughput sequencing.
Intrahepatic microbes govern liver immunity by programming NKT cells
GEO Series GSE161876. Mus musculus. 2 samples. Type: Expression profiling by high throughput sequencing.
Gut microbe-derived metabolites drive psoriatic inflammation via modulation of skin Th17 cells
GEO Series GSE298131. Mus musculus. 18 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
The microbiome buffers tadpole hosts from heat stress: a hologenomic approach to understand host-microbe interactions under warming
GEO Series GSE208645. Lithobates clamitans. 20 samples. Type: Expression profiling by high throughput sequencing.
In-vitro response pattern of mesenteric lymph node (MLN) cells to specific gut commensal microbes
GEO Series GSE189176. Mus musculus. 11 samples. Type: Expression profiling by high throughput sequencing.
Spatial coupling of microbes and immune cells in solid malignancies [LCM_cold_hot_tumor_nest]
GEO Series GSE155724. Homo sapiens. 20 samples. Type: Expression profiling by high throughput sequencing.
Composition of colonic microbes in mice deficient in intestinal Treg subsets
GEO Series GSE241887. Mus musculus. 64 samples. Type: Other.
Integrated analysis Of Biopsies From Inflammatory Bowel Disease Patients Identifies SAA1 As A Link Between Mucosal Microbes With TH17 And TH22 Cells [diseased subjects]
GEO Series GSE96665. Homo sapiens. 41 samples. Type: Expression profiling by array.
Soil microbes and plant phenology data and R code
<p>Datasets and R code associated with a manuscript by M. Van Nuland et al. that details how natural soil microbiome variation affects plant biomass growth by mediating spring foliar phenology. Included are bacterial and fungal community and taxonomic datasets, experimental plant phenology datasets, and code to reproduce all data analysis and figures in the associated manuscript.</p>
Long-term persistence of arbuscular mycorrhizal fungi in the rhizosphere and bulk soils of non-host Brassica napus and their networks of co-occurring microbes
<p>Arbuscular mycorrhizal fungi (AMF) are obligate plant symbionts that improve the nutrition and health of their host. Most, but not all crops form a symbiosis with AMF. It is the case for canola (<em>Brasica napus</em>), an important crop in the Canadian prairies that is known to not form this association. From 2008 to 2018, an experiment was replicated at three locations of the Canadian prairies and it was used to assess the impact of canola on the community of AMF naturally occurring in three cropping systems, canola monoculture, canola in a two rotation systems (two-years, canola-wheat and three-years barley-pea-canola). We sampled canola rhizosphere and bulk soils to (i) determine diversity and community structure of AMF, and (ii) assess how these AMF communities interact with other fungi and bacteria. We detected 49 AMF Amplicon Sequence Variant (ASV) in canola rhizosphere and bulk soils, confirming the persistence of a diversified AMF community in canola-planted soil, even after 10 years of canola monoculture, which was unexpected considering that canola is among non-mycorrhizal plants. Network analysis revealed a broad range of potential interactions between canola-associated AMF and some fungal and bacterial taxa. We report for the first time that two AMF, <em>Funneliformis mosseae</em> and <em>Rhizophagus iranicus,</em> shared their bacterial cohort almost entirely in bulk soil. Our results suggest the existence of non species-specific AMF-bacteria or AMF-fungi relationships that could benefit AMF in absence of host plants. The persistence of an AMF community in canola rhizosphere and bulk soils bring a new light on AMF ecology and lead to new perspectives for further studies about AMF and soil microbes interactions and AMF subsistence without mycotrophic host plants.</p>
Prospective Cohort Study of Molecular Mechanism of Lower Respiratory Tract Microbes in Patients With AECOPD
ClinicalTrials.gov study NCT04259736. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Transfer of Strictly Anaerobe Microbes From Mother to Child
ClinicalTrials.gov study NCT04140747. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Establish the Relationship Between Shift in Prescribing Pattern and Associated Shift in Sensitivity Pattern of Causative Microbes in UTI Patients in a Closed Community
ClinicalTrials.gov study NCT03716804. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Impact of Microbe Literacy Initiative on Improved Vaccine Uptake in Peri-urban Slum Areas in Kathmandu, Nepal
ClinicalTrials.gov study NCT05378438. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Infant Microbiota Restoration With Maternal Microbes
ClinicalTrials.gov study NCT07212361. IPD Sharing: NO. Countries: 1. Publications: 0.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.