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Fig. 5 in Three new species of Ligophorus Euzet & Suriano, 1977 (Monogenea: Ancyrocephalidae) from Moolgarda buchanani (Bleeker) off Johor, Malaysia based on morphological, morphometric and molecular data

Fig. 5. Sclerotised hard parts of L. liewi, new species (A–F) and L. johorensis, new species (G–L): A & G, dorsal anchors; B & H, dorsal bar; C & I, ventral anchors; D & J, ventral bar (dorsal view); E & K, marginal hook; F & L, male copulatory organ.

Fig. 3 in Three new species of Ligophorus Euzet & Suriano, 1977 (Monogenea: Ancyrocephalidae) from Moolgarda buchanani (Bleeker) off Johor, Malaysia based on morphological, morphometric and molecular data

Fig. 3. Maximum-parsimony (MP) trees generated from (A) 28S dataset and (B) 28S+ITS1 dataset using PAUP* with Ergenstrema mugilis as the outgroup. Percentages of the bootstrap values are shown along the branches. *denotes new species

Fig. 1 in Three new species of Ligophorus Euzet & Suriano, 1977 (Monogenea: Ancyrocephalidae) from Moolgarda buchanani (Bleeker) off Johor, Malaysia based on morphological, morphometric and molecular data

Fig. 1. Principal Component Analysis (PCA) scatterplot of 465 Ligophorus specimens based on all hard parts (marginal hook, anchors, bars and male copulatory organ). Vertical and horizontal bar plots indicate one-dimensional summary of the principal component axes, PC1 and PC2.

Fig. 2 in Three new species of Ligophorus Euzet & Suriano, 1977 (Monogenea: Ancyrocephalidae) from Moolgarda buchanani (Bleeker) off Johor, Malaysia based on morphological, morphometric and molecular data

Fig. 2. Dendrogram of 62 Ligophorus species based on characteristics of all hard parts (anchors, bars and copulatory organ). The arrows on the far right indicate the positions of the three new species: L. liewi, L. johorensis and L. grandis.

Fig. 4 in Three new species of Ligophorus Euzet & Suriano, 1977 (Monogenea: Ancyrocephalidae) from Moolgarda buchanani (Bleeker) off Johor, Malaysia based on morphological, morphometric and molecular data

Fig. 4. Photomicrographs of the sclerotised hard parts Ligophorus liewi, new species (A & B), L. johorensis, new species (C & D) and L. grandis, new species (E & F). A, C & E, anchors and bars; B, D & F, male copulatory organ.

Figure 4 in Mideopsis milankovici sp. nov. a new water mite from Montenegro based on morphological and molecular data (Acariformes, Hydrachnidia, Mideopsidae)

Figure 4 Photographs of dorsal shield (a–d; photographed immediately after dissection) and ejaculatory complex (e–g). a–c, e– Mideopsisg, milankovici sp. nov., Međurječka Rijeka stream, Montenegro: a, e, f – holotype ♂; b, g – paratype ♂; c – paratype ♀. d –M. persicus Pešić & Saboori, 2015, holotype ♂, Firooz Abad, Iran. Scale bar = 100 µm.

Figure 2 in Mideopsis milankovici sp. nov. a new water mite from Montenegro based on morphological and molecular data (Acariformes, Hydrachnidia, Mideopsidae)

Figure 2 Mideopsis milankovici sp. nov., ♂ (a–c, e, holotype; d, paratype), Međurječka rijeka stream, Montenegro. a – dorsal shield; b – ventral shield; c–d, ejaculatory complex; e – palp. Scale bars = 100 µm.

Figure 1 in Mideopsis milankovici sp. nov. a new water mite from Montenegro based on morphological and molecular data (Acariformes, Hydrachnidia, Mideopsidae)

Figure 1 Maximum Likelihood tree based on the barcode region of the COI marker. The numbers near the branches represent the bootstrap probabilities.

Figure 5 in Mideopsis milankovici sp. nov. a new water mite from Montenegro based on morphological and molecular data (Acariformes, Hydrachnidia, Mideopsidae)

Figure 5 Međurječka Rijeka stream, the locus typicus of Mideopsis milankovici sp. nov. (inset). Photo by V. Pešić.

Figure 9 in Phylogenetic relationships of thorny catfishes (Siluriformes: Doradidae) inferred from molecular and morphological data

Figure 9. Unrooted maximum parsimony trees of Doradidae inferred from molecular and morphological data. (A) Molecular tree based on 3833 bp of 12S, 16S and EF1a exons + introns sequence data; the black star indicates the hypothetical attachment point of the root (see Fig. 7). (B) Morphological tree based on 95 morphological characters (Higuchi, 1992); the black star indicates the hypothetical attachment point of the root (see Fig. 1). Numbers at nodes are bootstrap percentages based on 1000 pseudoreplicates. Support values <50% are not shown.

Figure 8 in Phylogenetic relationships of thorny catfishes (Siluriformes: Doradidae) inferred from molecular and morphological data

Figure 8. Maximum likelihood tree of Doradidae inferred from analysis of combined 12S, 16S and EF1a (exons + introns) sequence data. Numbers at nodes represent percentage Bayesian posterior probabilities, ML bootstrap (500 pseudoreplicates) and MP bootstrap (1000 pseudoreplicates). This is an unrooted tree; the black star indicates the hypothetical attachment point of the root (see Fig. 7).

Figure 2. Proposed 12S in Phylogenetic relationships of thorny catfishes (Siluriformes: Doradidae) inferred from molecular and morphological data

Figure 2. Proposed 12S rRNA secondary structure model for Doradidae. Single bases enclosed in squares indicate positions thought to be involved in the decoding mechanism.

Figure 1 in Phylogenetic relationships of thorny catfishes (Siluriformes: Doradidae) inferred from molecular and morphological data

Figure 1. Higuchi's (1992) phylogeny of Doradidae based on osteological characters. Subfamilies are labelled on the right. Unpublished genus–group names are indicated by A, B and C.

opencc-by-4.0May 2005View details →

Figure 4 in Phylogenetic relationships and evolution of Orbiniidae (Annelida, Polychaeta) based on molecular data

Figure 4. Most parsimonious tree (tree length = 2641, CI = 0.5388) of the maximum parsimony analysis of the combined dataset. The values at each node represent the MP bootstrap support. Taxa which are discussed in detail in the discussion are in bold type.

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Figure 3 in Phylogenetic relationships and evolution of Orbiniidae (Annelida, Polychaeta) based on molecular data

Figure 3. Maximum likelihood tree of the mitochondrial 16S rRNA gene dataset based on the GTR + G model of sequence evolution (–lnL = 3943.65274). The first value at each node represents the ML bootstrap support, the second the Bayesian posterior probability. Taxa which are discussed in detail in the discussion are in bold type.

dryad40/100

Data from: Molecular and morphological evidence reveals a new species of Antiphytum (Echiochiloideae, Boraginaceae) from Guerrero, Mexico

Molecular and morphological evidence supports a new species in the genus Antiphytum from the Sierra Madre del Sur, in the state of Guerrero, Mexico, here described as A. brevicalyx. This species is unique in the genus by possessing a calyx shorter than the corolla tube at anthesis; it is similar to A. floribundum in inflorescence arrangement, but differs from that species in lacking a basal leaf rosette and having appendages on the corolla throat. According to phylogenetic analysis of nuclear ITS and plastid ndhF-rpl32 sequences representing seven of the eight North American species of the genus besides the proposed new species, accessions of A. brevicalyx form a well-defined clade within Antiphytum, corroborating its distinctive morphology. However, the analyses do not resolve the phylogenetic position of A. brevicalyx within the genus.

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Replication Data for: Geometry-Complete Perceptron Networks for 3D Molecular Graphs

Included are preprocessed data files for the Newtonian many-body systems modeling task described in our accompanying manuscript.

Data for "Transferring Chemical and Energetic Knowledge Between Molecular Systems With Machine Learning"

Data used in the paper "Transferring Chemical and Energetic Knowledge Between Molecular Systems With Machine Learning." The following is a description of each file: - ala_dipep_full.zip contains the JSON files for alanine dipeptide - ala_dipep_full.txt contains the free energy values for alanine dipeptide - trialanine.zip contains the JSON files for trialanine - trialanine.txt contains the free energy values for trialanine - decaalanine.zip contains the JSON files for decaalanine, broken into groups   Each JSON file contains the following properties: - atom_types: describing the short strings used for various types of atoms via their mass and radius. - atoms: describing each individual atom, with their type via the short string in atom_types, their partial charge, and coordinates. - angles: describing the angles formed between three atoms, their atom indices, as well as their angular value. - dihedrals: describing the dihedrals formed between four atoms, their atom indices, as well as their dihedral value. - bonds: describing the existence of pairwise bonds between atoms via a binary number. - van_der_waals: describing the van der Waals forces between pairs of atoms. - coulomb: describing the Coulomb forces between pairs of atoms.

Fig. 4 in Six new species of Zaischnopsis Ashmead (Hymenoptera: Chalcidoidea: Eupelmidae) from China based on morphological and molecular data

Fig. 4. Zaischnopsis pacis Jiang & Peng sp. nov. A. Body, lateral view. B. Mesosoma, dorsal view. C. Head, front view. D. Head, dorsal view. E. Fore wing. F. Antenna. G. Mesosoma, lateral view. H. Head, lateral view.

Fig. 8. SEM photos. A‒C in Six new species of Zaischnopsis Ashmead (Hymenoptera: Chalcidoidea: Eupelmidae) from China based on morphological and molecular data

Fig. 8. SEM photos. A‒C. Parascrobal region, show sculpture and setae. A. Zaischnopsis covid Jiang & Peng sp. nov. B. Z. campaniformis Tang & Peng sp. nov. C. Z. pacis Jiang & Peng sp. nov. D‒J. Seta of gena. D. Z. covid. E‒F. Z. fuscolivida Tang & Peng sp. nov. G. Z. lii Jiang & Peng sp. nov. H. Z. pacis. I. Z. campaniformis. J. Z. zhongi Jiang & Peng sp. nov. K‒O. Z. lii. K. Mesosoma. L. Setae of anterior convex region of mesoscutal medial lobe. M. Setae of posterior depressed region of mesoscutal medial lobe. N. Setae of mesoscutal lateral lobe. O. Setae of axilla.