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373
datasets available to search
ShareScore release 0.7.1
Dataset results
373 results for “Nanopore”
Long-read transcriptome profiling of the rat hippocampal neurons in primary culture at different time points after activation using Nanopore sequencing
GEO Series GSE218694. Rattus norvegicus. 20 samples. Type: Expression profiling by high throughput sequencing.
High-throughput error corrected Nanopore single cell transcriptome sequencing
GEO Series GSE130708. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing.
Catalytic activity of nuclear METTL3 promotes functional m6A modifications that drive retinal development [Nanopore-seq]
GEO Series GSE287489. Mus musculus. 2 samples. Type: Other.
Robust methylation based classification of brain tumors using nanopore sequencing
GEO Series GSE209865. Homo sapiens. 415 samples. Type: Methylation profiling by high throughput sequencing; Other.
Nanopore PCR-free direct cDNA sequencing on a murine model of endotoxin-indcued acute kidney injury
GEO Series GSE244942. Mus musculus. 17 samples. Type: Expression profiling by high throughput sequencing.
Interferon inducible pseudouridine modification in human mRNA by quantitative nanopore profiling (Illumina)
GEO Series GSE180655. Drosophila melanogaster; human feces metagenome; Saccharomyces cerevisiae; Caenorhabditis elegans; Homo sapiens. 1 samples. Type: Other.
Transfer learning enables identification of multiple types of RNA modification using nanopore direct RNA sequencing
GEO Series GSE227087. Oryza sativa; synthetic construct. 8 samples. Type: Expression profiling by high throughput sequencing.
Unraveling the whole genome DNA methylation profile of zebrafish kidney marrow through Oxford Nanopore sequencing
GEO Series GSE232842. Danio rerio. 12 samples. Type: Methylation profiling by high throughput sequencing.
scNanoATAC-seq: Long-read Single-cell ATAC-seq by Oxford Nanopore Technologies Sequencing
GEO Series GSE194024. Mus musculus; Homo sapiens. 17 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Dataset for the manuscript of the "Experimental investigation on the movability of water in shale nanopores:A case study of Carboniferous shale from the Qaidam Basin, China"
<p>Dataset for the manuscript of the "Experimental investigation on the movability of water in shale nanopores:A case study of Carboniferous shale from the Qaidam Basin, China"</p>
Supplementary Dataset to the manuscript: High intra-laboratory reproducibility of nanopore sequencing in bacterial species
<p>This repo contains the assembly files generated with long read only approach versus combined short and long read approach</p> <ul> <li>Genome assemblies (Chromosome only) using long read only approach</li> <li> <p>Genome assemblies (Chromosome only) using combined short and long read approach</p> </li> </ul>
Coral: a dual context-aware basecaller for nanopore direct RNA sequencing - DRS test dataset
<p>Raw RNA sequencing data from Oxford Nanopore. The dataset is comprised of 100k randomly selected reads.</p> <p>Zebrafish's original data is from ENA accession ERX9536682. </p>
The effect of water vapor on methane adsorption in the nanopores of shale
<p>The effect of water vapor on methane adsorption in the nanopores of shale</p>
Fast and Accurate Breast Cancer Diagnosis Using Nanopore Sequencing in Tanzania (Fast-ABCD Sequencing)
ClinicalTrials.gov study NCT06633276. IPD Sharing: UNDECIDED. Countries: 1. Publications: 0.
Nanopore Sequencing in Ophthalmology
ClinicalTrials.gov study NCT05372861. IPD Sharing: NO. Countries: 1. Publications: 0.
Application of Nanopore Sequencing in Newly Diagnosed Acute Myeloid Leukemia Patients With Bloodstream Infection
ClinicalTrials.gov study NCT05016752. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Analysis of HIV-1 transcriptome in different cell models with nanopore sequencing [HIVTCD4_A2018]
GEO Series GSE138423. Homo sapiens. 3 samples. Type: Expression profiling by high throughput sequencing.
Spatially coordinated heterochromatinization of long synaptic genes in fragile X syndrome [Nanopore]
GEO Series GSE218679. Homo sapiens. 23 samples. Type: Other.
A streamlined nanopore-compatible 5PSeq protocol for rapid phenotypic antimicrobial sensitivity testing (FigS4B-C_mixed_illumina)
GEO Series GSE312901. Staphylococcus aureus; Enterococcus faecalis; Bacillus subtilis; Clostridioides difficile. 4 samples. Type: Other.
m6ATM: a deep learning framework for demystifying m6A epitranscriptome via Nanopore long read RNA-seq data
GEO Series GSE265754. synthetic construct. 3 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.