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Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
365
datasets available to search
ShareScore release 0.7.1
Dataset results
365 results for “Spatial modeling”
Spatial Transcriptomics of Controlled vs Uncontrolled Tuberculosis in a Mouse Model
GEO Series GSE292392. Mus musculus. 16 samples. Type: Other.
Spatiotemporal transcriptomic map of glial cell response in a mouse model of acute brain ischemia [spatial transcriptomics]
GEO Series GSE233814. Mus musculus. 5 samples. Type: Expression profiling by high throughput sequencing; Other.
Effects of inhibiting stearoyl-CoA desaturase (SCD) on the spatial transcriptome in a mouse model of Alzheimer's disease (AD)
GEO Series GSE275131. Mus musculus. 4 samples. Type: Other.
Intercellular signaling and synaptic deconstruction uncovered by single-cell and spatial transcriptomics in an AD tauopathy model
GEO Series GSE305314. Rattus norvegicus. 28 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
Microglia - astrocyte cross-talk in the amyloid plaque niche of an Alzheimer’s disease mouse model as revealed by spatial transcriptomics (CosMx)
GEO Series GSE263791. Mus musculus. 2 samples. Type: Other.
Spatially-patterned and functional kidney assembloids recapitulate progenitor self-assembly and enable high-fidelity in vivo disease modeling
GEO Series GSE272707. Homo sapiens. 4 samples. Type: Other.
Spatial transcriptomics dataset of primary tumours from MDA-MB-231 xenograft model
GEO Series GSE300613. Homo sapiens; Mus musculus. 2 samples. Type: Other.
Spatial-temporal tracking of Brca1-driven breast tumorigenesis from sporadic mutant cells with a genetic mosaic mouse model
GEO Series GSE214433. Mus musculus. 12 samples. Type: Expression profiling by high throughput sequencing.
Spatially-patterned and functional kidney assembloids recapitulate progenitor self-assembly and enable high-fidelity in vivo disease modeling
GEO Series GSE262382. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Spatial transcriptomic analysis of a pre-clinical NF1 pseudarthrosis fracture model
GEO Series GSE218046. Mus musculus. 2 samples. Type: Other.
Spatial single cell transcriptomic analysis of a lineage-traceable mouse model of DICER1 Syndrome informs tumor developmental hierarchy [RNA-Seq]
GEO Series GSE309820. Mus musculus. 12 samples. Type: Expression profiling by high throughput sequencing.
Spatial transcriptomic profiling of gene expression alterations following ACBP/DBI inhibition in a MASH-Driven HCC mouse model
GEO Series GSE296545. Mus musculus. 4 samples. Type: Other.
Gene expression profile at single cell level of an orthotopic mouse model with ZEB1 knockdown in the KPC cell line and control group mouse [spatial transcriptomic]
GEO Series GSE281083. Mus musculus. 2 samples. Type: Other.
In vitro Modeling of the Human Dopaminergic System using spatially arranged ventral Midbrain-Striatum-Cortex Assembloids [scRNAseq]
GEO Series GSE219245. Homo sapiens. 2 samples. Type: Expression profiling by high throughput sequencing.
Hydroxyurea protects hippocampal neurons against oxidative, metabolic and excitotoxic stress, and improves spatial memory in a mouse model of Alzheimer’s disease (Rat)
GEO Series GSE111941. Rattus norvegicus. 16 samples. Type: Expression profiling by array.
Integrated Spatial Transcriptomics and Single-Cell RNA Sequencing Reveal Lars2-Mediated Spatiotemporal Dynamics of Myocardial Remodeling in a Mouse Model of Transverse Aortic Constriction (TAC)
GEO Series GSE308859. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing; Other.
Spatial transcriptomics (Visium, Spatial 3' V1, 10x Genomics) analysis of heart tissues in a murine model of Kawasaki disease vasculitis
GEO Series GSE178799. Mus musculus. 2 samples. Type: Other.
Perturb-map coupled with spatial transcriptomics identifies mutation associated gene signatures in a mouse model of lung adenocarcinoma
GEO Series GSE193460. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing; Other.
Spatially-patterned and functional kidney assembloids recapitulate progenitor self-assembly and enable high-fidelity in vivo disease modeling [hKPA_invivo_data]
GEO Series GSE297772. Homo sapiens. 5 samples. Type: Expression profiling by high throughput sequencing.
Tau accumulation induces microglial state alterations in Alzheimer’s disease model mice (Spatial Transcriptomics)
GEO Series GSE270382. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.