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295
datasets available to search
ShareScore release 0.9.0
Dataset results
295 results for “Structure prediction”
Operon mRNAs are organized into ORF-centric structures that predict translation efficiency
GEO Series GSE77617. Escherichia coli. 17 samples. Type: Expression profiling by high throughput sequencing; Other.
Interferon responsive high endothelial venules drive tumor tertiary lymphoid structure formation and predict response to anti-PD-1 immunotherapy in nasopharyngeal carcinoma
GEO Series GSE289272. Homo sapiens. 55 samples. Type: Other.
Alterations in serum microRNA in humans with alcohol use disorders impact cell proliferation and cell death pathways and predict structural and functional changes in brain [rat miRNA 2.0]
GEO Series GSE71653. Rattus norvegicus; synthetic construct. 38 samples. Type: Non-coding RNA profiling by array.
Alterations in serum microRNA in humans with alcohol use disorders impact cell proliferation and cell death pathways and predict structural and functional changes in brain [mouse NSC miRNA 2.0]
GEO Series GSE71652. synthetic construct; Mus musculus. 18 samples. Type: Non-coding RNA profiling by array.
Predicting modulaters of TE-driven chromatin 3D structure
GEO Series GSE248863. Homo sapiens. 20 samples. Type: Expression profiling by high throughput sequencing; Other.
Fluo-Cast-Bright: A Deep Learning Pipeline for the Non-Invasive Prediction of Chromatin Structure and Developmental Potential in Live Oocytes
GEO Series GSE266845. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing.
Alterations in serum microRNA in humans with alcohol use disorders impact cell proliferation and cell death pathways and predict structural and functional changes in brain [miRNA 3.0]
GEO Series GSE71537. synthetic construct; Homo sapiens. 30 samples. Type: Non-coding RNA profiling by array.
PfamSDB, The structural database of Pfam seeds made by cutting the Full-Length Alphafold predicted structures
Open the record for dataset details and reuse information.
Predicting modulaters of TE-driven chromatin 3D structure (RNA-seq)
GEO Series GSE248861. Homo sapiens. 10 samples. Type: Expression profiling by high throughput sequencing.
In depth mechanistic analysis including high-throughput RNA sequencing in the prediction of functional and structural cardiotoxicants using hiPSC cardiomyocytes
GEO Series GSE244740. Homo sapiens. 3072 samples. Type: Expression profiling by high throughput sequencing.
Structure classification of glass-forming liquids by graph neural networks: Explaining predictions with the Self-Attention mechanism
<p>This repository includes the dataset and Python scripts used in the article, "Structure classification of glass-forming liquids by graph neural networks: Explaining predictions with the Self-Attention mechanism". The repository also includes source data of figures in the article.</p>
dataset for "Rapid Prediction of Liquid Structure from a Single Molecular Configuration Using Deep Learning"
<p>The data sets are used to train, validate, and test the PointNet-MD model for rapid prediction of radial distribution functions for different liquids. Details about this work can be found in the <a href="https://pubs.acs.org/doi/10.1021/acs.jcim.3c00472">paper</a> entitled <a href="https://pubs.acs.org/doi/10.1021/acs.jcim.3c00472"><em><span>Rapid Prediction of a Liquid Structure from a Single Molecular Configuration Using Deep Learning</span></em></a>. </p>
Chromatin structure predicts survival in glioma patients
GEO Series GSE295378. Homo sapiens. 38 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
RBP Footprint Grand Challenge: An evaluation of novel computational approaches to RNA-binding protein target prediction from structural data
GEO Series GSE227455. Homo sapiens. 4 samples. Type: Expression profiling by high throughput sequencing; Other.
Predicting modulaters of TE-driven chromatin 3D structure (HiC)
GEO Series GSE248860. Homo sapiens. 10 samples. Type: Other.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.