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2,142 results for “by contact”
Mapping cis-regulatory chromatin contacts in neural cells links neuropsychiatric disorder risk variants to target genes
<p>ATAC-seq peaks are in narrowPeak format. RNA-seq results are organized according to cell type. The normalized RPKM is reported for each gene in GENCODE 19. All data was mapped to hg19.</p>
FD questionnaire: contacts and answers
<p>Responses of different Water Authorities on a questionnaire about the implementation process of the Floods Directive across Europe.</p>
Figure 1 in The Leluh Royal Tombs and Pre-Contact Mortuary Patterns on Kosrae Island, Micronesia
Figure 1. Kosrae's Location In Eastern Micronesia (Cordy 1993:Fig. 1).
Figure 7. A in Mollusk Foraging and Gendered Labor at Litekyan (Ritidian) During the Spanish Contact Period in Guam
Figure 7. A representative sample of one of the excavated units. (Photo by Rico Roldan)
Figure 1 in Mollusk Foraging and Gendered Labor at Litekyan (Ritidian) During the Spanish Contact Period in Guam
Figure 1. Map of the Mariana Islands chain (Carson 2015:5).
Figure 4 in Mollusk Foraging and Gendered Labor at Litekyan (Ritidian) During the Spanish Contact Period in Guam
Figure 4. Photograph of the completed excavation of latte set 1 (Photo courtesy of Hiro Kurashina).
Figure 3 in Mollusk Foraging and Gendered Labor at Litekyan (Ritidian) During the Spanish Contact Period in Guam
Figure 3. Painting by J.A. Pellion (1819). Village life in Guam.
Figure 8 in Mollusk Foraging and Gendered Labor at Litekyan (Ritidian) During the Spanish Contact Period in Guam
Figure 8. Rank order analysis of Latte 1 and Latte 2 mollusks.
Social contact data for the BHDSS and FWHDSS in the Gambia (2022)
<p>Social contact data for people in the <span>Basse and Fuladu West Health and Demographic Surveillance Systems</span> (BHDSS and FWDHSS) in the Gambia. Participants reported all their direct contacts in the 24 hours preceding the survey. This survey was conducted in 2022. Data is formatted to be used in the <em>socialmixr</em> package in <em>R</em>.</p> <p>Note, for a subset of school-going participants, school contacts were observed in the classroom for a two hour period. The list of participants needs to be filtered accordingly to ensure the correct denominators are applied when calculating contact rates.</p>
In-vivo video microscopy of the rupturing process of thin blood vessels in transparent fish during contact with a blunt indenter
<p>To clarify the mechanism of bruise injuries caused by blunt impact, in vivo microscopy was performed. A flat ended indenter made of transparent acrylic was loaded onto the lateral side of the tail region of anesthetized fish. The process of the rupture of thin blood vessels was recorded in two specimens.</p> <p>This data set includes two types of files; (1) mp4 files of the in vivo microscopy; (2) pdf files to explain the mp4 files.</p> <p><span>The mp4 files are the original data of “Fujikawa, T., Yamada, Y. In vivo video microscopy of the rupturing process of thin blood vessels to clarify the mechanism of bruising caused by blunt impact: an animal study. BioMed Eng OnLine 23, 94 (2024). https://doi.org/10.1186/s12938-024-01284-2.”</span></p>
Dataset of the article: "The social dimension of equine welfare: social contact positively affects the emotional state of stalled horses"
<p>Here are the data used in the analyses of the manuscript "The social dimension of equine welfare: social contact positively affects the emotional state of stalled horses.".<br>Experiment 1: Observations in the individual stall<br>Experiment 2: Observations during horse grooming<br>Experiment 3: Judgement bias test</p>
Machine learning reveals the diversity of human 3D chromatin contact patterns (example predictions genome wide)
<p>Example data for the paper: Machine learning reveals the diversity of human 3D chromatin contact patterns</p> <p>GitHub: https://github.com/erin-n-gilbertson/3DGenome-diversity/tree/main</p> <p>biorXiv: https://www.biorxiv.org/content/10.1101/2023.12.22.573104v1.full</p> <p>Manuscript accepted at Molecular Biology and Evolution</p> <p>Of primary interest will be the example predictions genome wide for hg38 reference, human-archaic hominin ancestor and most divergent 1KG individual per genome along with the Jupyter notebook tutorial for making your own Akita predictions given any input 1MB sequence.</p> <div> <ul> <li>bin: contains python script for and qsub array shell script for generating example predictions. These scripts can be modified to take in any fasta files as input.</li> <li>akita_predictions: contains both Akita prediction output arrays and SVG files with predicted contact maps for the hg38 reference, human-archaic hominin ancestor and most divergent 1KG individual in each of 4,873 1MB windows</li> <li>anc_window_spearman.csv: spearman correlation between each 1KG individual and the ancestor for each 1MB window. To calculate 3D divergence subtract these values from 1.</li> <li>basenji: basenji dir from their github, necessary in the directory to run predictions - https://github.com/calico/basenji/tree/master</li> <li>genomes: fasta genomes for hg38 reference and human-archaic hominin ancestor used to make akita predictions</li> <li>divergent_windows: variants and expected divergence distributions for 392 more divergent than expected windows. Defined in the manuscript as windows where 3D divergence between 1KG indiivudals and the ancestor is greater than what would be expected based on sequence divergence. See manuscript Fig. S9 for more details. </li> <li>windows.txt: 4,873 1MB genomic windows with 100% coverage in hg38 used for Akita predictions</li> <li>making_examples.ipynb: jupyter notebook with tutorial instructions for making Akita predictions on any human genome sequence.</li> </ul> <br><br></div>
GS_EgoExo_Plaster Turning on Wheel_ML_EN 1 - audio_contact
<p>GS_EgoExo_Plaster Turning on Wheel_ML_EN 1 - audio_contact</p>
CLDF dataset underlying the study "First steps towards the detection of contact layers in Bangime: a multi-disciplinary, computer-assisted approach" from 2022
<p>Cite the source of the dataset as:</p> <blockquote> <p>Hantgan, Abbie and Babiker, Hiba and List, Johann-Mattis (2022): First steps towards the detection of contact layers in Bangime: a multi-disciplinary, computer-assisted approach [version 2; peer review: 2 approved]. Open Research Europe 2022, 2:10.</p> </blockquote>
Experimental and theoretical data to study intrusion pressure and contact angle for a lyophobic material, Cu2L
<p>/* **********<br>/* This work is licensed under a Creative Commons Attribution 4.0 International License.<br>/* **********<br> </p> <p>Open access to theoretical and experimental data generated by the project Electro-Intrusion (101017858, Horizon 2020, European Union). Research pertaining to Task 3.1 (WP3).<br>Underlying data for the publication Merchiori, S. et al. Counterintuitive Trend of Intrusion Pressure with Temperature in the Hydrophobic Cu2(tebpz) MOF. Small 2024, 20,2402173. https://doi.org/10.1002/smll.202402173. Data related to Figures 1, 2.</p>
Three-point contact data for "Multi-contact statistics distinguish models of chromosome organization"
<p>Three-point contact data for the publication "Multi-contact statistics distinguish models of chromosome organization".</p>
Parental population range expansion before secondary contact promotes heterosis
<p>Population genomic analysis of hybrid zones is instrumental to our understanding of the evolution of reproductive isolation. Many temperate hybrid zones are formed by the secondary contact between two parental populations that have undergone post-glacial range expansion. Here we show that explicitly accounting for historical parental isolation followed by range expansion prior to secondary contact is fundamental for explaining genetic and fitness patterns in these hybrid zones. Specifically, ancestral population expansion can result in allele surfing where neutral or slightly deleterious mutations drift to high frequency at the expansion front. If these surfed deleterious alleles are recessive, they can contribute to substantial heterosis in hybrids produced at secondary contact, counteracting negative effects of Bateson-Dobzhansky-Muller incompatibilities (BDMIs) hence weakening reproductive isolation. When BDMIs are linked to such recessive deleterious alleles the fitness benefit of introgression at these loci can facilitate introgression at the BDMIs. The extent to which this occurs depends on the strength of selection against the linked deleterious alleles and the distribution of recombination across the chromosome. Finally, surfing of neutral loci can alter the expected pattern of population ancestry, thus accounting for historical population expansion is necessary to develop accurate null genomic models of secondary-contact hybrid zones.</p>
Data for "Quantized critical supercurrent in SrTiO3-based quantum point contacts"
<p>Spreadsheets containing raw data, axis and trace labels necessary to reproduce all figures in the submitted manuscript "Quantized critical supercurrent in SrTiO<sub>3</sub>-based quantum point contacts".</p> <p> </p>
Fig. 35 in Hybridization Among Western Whiptail Lizards (Cnemidophorus Tigris) In Southwestern New Mexico: Population Genetics, Morphology, And Ecology In Three Contact Zones
Fig. 35. Ventral views of the same lizards arranged in the same sequence as in figure 34.
Fig. 3. The contact region. Numbers designate collecting sites. Compare with figure 49 in Hybridization Among Western Whiptail Lizards (Cnemidophorus Tigris) In Southwestern New Mexico: Population Genetics, Morphology, And Ecology In Three Contact Zones
Fig. 3. The contact region. Numbers designate collecting sites. Compare with figure 49.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.