Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
11,198
datasets available to search
ShareScore release 0.9.0
Dataset results
11,198 results for “organ”
Projects and Organizations in Open Sustainable Technology
<p><strong>A curated database of open technology projects and organisations working for a stable climate, energy supply and natural resources. The dataset was created by the <a href="https://opensustain.tech/">Open Sustainable Technology Initiative</a></strong></p>
Data associated to: Analytical Physical Model for Organic Metal-Electrolyte-Semiconductor Capacitors
<p>Data associated to the manuscript entitled: Analytical Physical Model for Organic Metal-Electrolyte-Semiconductor Capacitors by Larissa Huetter, Adrica Kyndiah and Gabriel Gomila</p>
Dataset: Analytical Physical Model for Electrolyte Gated Organic Field Effect Transistors in the Helmholtz Approximation
<p>Data corresponding to the figures of the manuscript "Analytical Physical Model for Electrolyte Gated Organic Field Effect Transistors in the Helmholtz Approximation" by Larissa Huetter, Adrica Kyndiah and Gabriel Gomila</p>
Data to support the publication "Impact of agricultural management on soil aggregates and associated organic carbon fractions: Analysis of long-term experiments in Europe"
<p><strong>Raw data:</strong> Experimental plot ids and information, mass distribution of all aggregate fractions after wet sieving, Sand content of each fraction to conduct the sand correction, mass distribution of all fractions after isolating the micro-aggregates held within the macroaggregates, yields per treatment, carbon content per fraction (raw data)</p> <p><strong>All data per plot: </strong>SOC content, MAOM and POM content of each fraction presented in the fractionation scheme included in the manuscript, together with the mass of the relative fractions. </p> <p> </p>
A Ligand Field Molecular Mechanics Study of CO2 Induced Breathing in the metal-organic framework DUT-8(Ni)
<p>Raw Data, scripts and processed data for the publication "A Ligand Field Molecular Mechanics Study of CO2 Induced Breathing in metal-organic framework DUT-8(Ni)"</p>
Organic Matter and Decomposition Rate Observational Data from Salt Marshes of North Carolina
<p>This data have been collected from salt marshes in Masonboro Island and Wrightsville Beach in NC, US, in 2015 and 2016.</p> <p>The data include organic matter percent, organic carbon percent, bulk density, decomposition rate, stabilization factor, marsh elevation and vegetation cover all along transects from the channel to the inner marsh.</p>
Dataset underlying the publication: "Organic contaminants in bio-based fertilizer treated soil: Target and suspect screening approaches" DOI: 10.1016/j.chemosphere.2023.139261
<p>Dataset underlying the publication "Organic contaminants in bio-based fertilizer treated soil: Target and suspect screening approaches" DOI: 10.1016/j.chemosphere.2023.139261.</p>
Dataset of imaged commercial and custom-made printing filament materials for Computed Tomography imaging of organ body phantoms
<p>The dataset includes a total of 29 filament materials 7 custom-made materials and the selection of 22 commercially available materials.</p> <p>All the materials were printed with a Longer LK4 Pro printer into cubes with dimensions 20 mm x 20 mm x 10 mm.</p> <p>A part of each filament was grinded into pellets, placed into metallic cylinder container and then were heated up to their melting points to receive a homogeneous cylindrical sample of this material.</p> <p>The cubes and the cylindrical samples were scanned at a clinical CT scanner at three anode voltages (kV) and a slice thickness of 0.6 mm.</p>
Data: Homochiral metal-organic frameworks coated double-plasmon active optical fiber for in-situ enantioselective detection
<p>This dataset is focused on utilization of optical fiber with double-plasmon activity (ensured by a spatially separated gold and silver nanocoating of the fiber core) and subsequent surface grafting by HMOFs for enantioselective capture of organic enantiomers.</p>
Mud and organic content are strongly correlated with microplastic contamination in a meandering riverbed - Data sets
<p>This is the dataset relating to publication "Microplastics distribution in a meandering riverbed reveasl mud content as a universal normalizer for microplastic contamination in aquatic environments" by Van Daele, M., Van Bastelaere, B., de Clercq, J., Meyer, I., Vercauteren, M. and Asselman, J.</p> <p>It contains the microplastic and sedimentological data that support the findings of that publication, with a seperate file for data obtained from riberbed sediments and the water column. It further contains a file with all source data for the graphs in the figures of the main manuscript and the Supplementary Information<span><span>.</span></span></p>
Dataset for "Contrasting Effects of Organic and Mineral Nitrogen Challenge the N-Mining Hypothesis for Soil Organic Matter Priming"
<p>Dataset for the article:</p> <p>Mason-Jones, K., Schmücker, N., Kuzyakov, Y. (2018) Contrasting Effects of Organic and Mineral Nitrogen Challenge the N-Mining Hypothesis for Soil Organic Matter Priming. Soil Biology and Biochemistry 124, 38-46, https://doi.org/10.1016/j.soilbio.2018.05.024</p>
Supplementary data for "Heterometallic perovskite-type metal-organic framework with an ammonium cation: structure, phonons, and optical response"
<p>Optimised structures of [NH<sub>4</sub>][Na<sub>0.5</sub>M<sub>0.5</sub>(COOH)<sub>3</sub>] (M = Al, Cr)</p> <p>Phonon output for [NH<sub>4</sub>][Na<sub>0.5</sub>Cr<sub>0.5</sub>(COOH)<sub>3</sub>]</p> <p>Gif of the T’(NH<sub>4</sub><sup>+</sup>) mode (no. 23). The c-axis is the vertical direction.</p> <p>For further information please see the associated publication.</p>
Global derived datasets for use in k-NN machine learning prediction of global seafloor total organic carbon
<p>This dataset includes 663 predictor grids used for k-NN global prediction of seafloor total organic carbon.</p> <p>663 predictor grids available in netCDF4 HDF5 file format. Grids are cell-centered sized 4320 x 2160. File names adhere to the naming conventions discussed below. The naming structure is partioned by underscores and periods in the following order: interface to which the gridded values refer to, quantity of values contained within the grid, units and reference values/units (e.g. meters below sea level), data source, statistic calculated (if applicable), grid pitch, and file extension.</p> <p>Possible interfaces from the top – down:</p> <p>SS – Sea surface – atmosphere interface (may also be average of the entire water column)</p> <p>SF – Seafloor – water interface (may also be denoted by GL)</p> <p>GL – Ground level (e.g. bottom of pure liquid, top of dirt)</p> <p>SC – Sediment – crust interface (e.g. sediment above, igneous/metamorphic below)</p> <p>CM – Crust – mantle interface (e.g. Mohorovicic discontinuity)</p> <p>Appropriate reference naming marker (bold), original data source, and date of last access:</p> <p><strong>Becker</strong></p> <p>Becker, J. J., Wood, W. T., & Martin, K. M. (2014). <em>Global crustal heat flow using random decision forest prediction</em>, Abstract NG31A-3788 presented at 2014 Fall Meeting, AGU, San Francisco, California, U.S.A. Last access: 06/23/2015.</p> <p><strong>CRUST1</strong> </p> <p>Pasyanos, M.E., Masters, G., Laske, G. & Ma, Z. (2012). <em>LITHO1.0 - An Updated Crust and Lithospheric Model of the Earth Developed Using Multiple Data Constraints</em>, Abstract T11D-09 presented at 2012 Fall Meeting, AGU, San Francisco, California, U.S.A. Last access: 07/01/2014.</p> <p><strong>CRUST1_NOAA</strong></p> <p> As the NOAA sediment thickness database is globally not complete, data gaps in the NOAA grid with this have been supplemented by the CRUST1 sediment thickness (see above citation).</p> <p>Whittaker, J., Goncharov, A., Williams, S., Müller, R. D., & Leitchenkov, G. (2013) Global sediment thickness dataset updated for the Australian-Antarctic Southern Ocean, <em>Geochemistry, Geophysics, Geosystems. </em>https://doi.org/10.1002/ggge.2018.<em> </em>Last access: 09/02/2018.</p> <p><strong>GVP</strong></p> <p>Global Volcanism Program (2013) Volcanoes of the World. In E. Venzke (ed.). (Vol. 4.7.3). Smithsonian Institution. https://doi.org/10.5479/si.GVP.VOTW4-2013. Last access: 09/22/2014.</p> <p><strong>ETOPO2v2</strong></p> <p>National Geophysical Data Center (2006). 2-minute Gridded Global Relief Data (ETOPO2) v2. National Geophysical Data Center, NOAA. DOI: 10.7289/V5J1012Q. Last access: 02/06/2013.</p> <p><strong>PLATES</strong></p> <p>Coffin, M.F., Gahagan, L.M., & Lawver, L.A. (1998). Present-day Plate Boundary Digital Data Compilation. University of Texas Institute for Geophysics Technical Report (No. 174, pp. 5). Last access: 09/15/2014.</p> <p><strong>ONRL</strong></p> <p>Ludwig,W., Amiotte-Suchet, P., & Probst, J. L. (2011). ISLSCP II Global River Fluxes of Carbon and Sediments to the Oceans. In F. G. Hall, G. Collatz, B. Meeson, S. Los, E. Brown de Colstoun, and D. Landis (Eds.), <em>ISLSCP Initiative II Collection</em>. Oak Ridge National Laboratory Distributed Active Archive Center, Oak Ridge, Tennessee, U.S.A. http://dx.doi.org/10.3334/ORNLDAAC/1028. Last Access: 02/15/2015.</p> <p><strong>Muller</strong></p> <p>Müller, R. D., Sdrolias, M., Gaina, C., & Roest, W. R. (2008). Age, spreading rates, and spreading asymmetry of the world’s ocean crust, <em>Geochemistry, Geophysics, Geosystems</em>, 9(4), Q04006. https://doi.org/10.1029/2007GC001743. Last accessed: 07/19/2011.</p> <p><strong>Woa13x</strong></p> <p>Boyer, T.P., Antonov, J. I., Baranova, O. K., Coleman, C., Garcia, H. E., Grodsky, A., et al. (2013) World Ocean Database 2013. In S. Levitus, A. Mishonov (Ed.), <em>NOAA Atlas NESDIS 72, Technical Ed</em>. Silver Spring, MD. http://doi.org/10.7289/V5NZ85MT. Last Access: 09/18/2014.</p> <p><strong>KIM</strong></p> <p>Kim, S.S. & Wessel, P. (2011). New global seamount census from the altimetry-derived gravity data, <em>Geophysical Journal International</em>, 186, 615-631. https://doi.org/10.1111/j.1365-246X.2011.05076.x. Last access: 09/22/2014.</p> <p><strong>HYCOM</strong></p> <p>The 1/12 deg global HYCOM+NCODA Ocean Reanalysis was funded by the U.S. Navy and the Modeling and Simulation Coordination Office. Computer time was made available by the DoD High Performance Computing Modernization Program. The output is publicly available at https://hycom.org/publications/acknowledgements/ocean-reanalysis-data.Last access: 03/19/2014.</p> <p><strong>NCEDC</strong></p> <p>NCEDC (2016). Northern California Earthquake Data Center. UC Berkeley Seismological Laboratory. Dataset. doi:10.7932/NCEDC. Last access: 09/21/2014.</p> <p><strong>Wei2010</strong></p> <p>Wei, C.-L., Rowe, G. T., Escobar-Briones, E., Boetius, A., Soltwedel, T., Caley, M. J., et al.(2010). Global patterns and predictions of seafloor biomass using random forests. <em>PLoS ONE</em>,5(12), e15323. https://doi.org/10.1371/journal.pone.0015323 Last access: 06/20/2016.</p> <p><strong>NGA_egm2008</strong></p> <p>Pavlis, N.K., Holmes, S. A., Kenyon, S. C., & Factor, J. K. (2008). <em>The</em> <em>EGM2008 Global Gravitational Model</em>, Abstract 2008AGUFM.G22A..01P presented at the 2008 General Assembly of the European Geosciences Union, Vienna, Austria. Last access: 07/10/2014.</p> <p><strong>WAVEWATCH3</strong></p> <p>The 1/12 deg global HYCOM+NCODA Ocean Reanalysis was funded by the U.S. Navy and the Modeling and Simulation Coordination Office. Computer time was made available by the DoD High Performance Computing Modernization Program. The output is publicly available at https://hycom.org/publications/acknowledgements/ocean-reanalysis-data. Last access: 03/19/2014.</p> <p>Updated global seafloor porosity grid using our k-nearest neighbors algorithm using 5 nearest neighbors. Observed data used for prediction from Martin et al. (2015). </p> <p>Martin, K. M., Wood, W. T., & Becker, J. J. (2015). A global prediction of seafloor sediment porosity using machine learning. <em>Geophysical Research Letters</em>, 42(24), 10640. https://doi.org/10.1002/2015GL065279</p> <p>Other grids which have been generated by empirical means are latitude (and derivatives), longitude (and derivatives), Coriolis, coast_is_1.0, and the random noise grids. </p> <p>Units referenced are as follows:</p> <p>KGM3 - kilogram per cubic meter<br> MS - meters per second<br> KM - kilometer<br> M_ASL - meters above sea level (i.e. meters referenced to sea level)<br> MWM2 - milliwatt per square meter<br> TGCYR - terragram of carbon per year<br> TGYR - terragram per year<br> MA - megaannum<br> M - meters<br> MGCM2 - milligram of carbon per square meter<br> DEG - degree<br> S - seconds</p> <p>Statistics grids are calculated within a given radius (e.g. 10km, 50km, 125km, 250km, 500km, 1000km) of the respective cell-centered value. The statistics grids include mean (.men), average absolute deviation from the mean (.aad), and the common logarithm (.log) of the absolute value of the mean (.mlg). Additionally, some grids are a weighted count for given radii (e.g. seamounts) where weight is a cosine taper from the center of the grid cell. </p> <p>The grid pitch for this dataset is uniformly at 5-arc minute denoted by “.5m”. Additionally, the extension used (netCDF4) is denoted by “.nc”.</p>
Real-time optical and electronic sensing with a β-amino enone linked, triazine-containing 2D covalent organic framework
<p>[This repository contains the source data for the manuscript "<strong>Real-time optical and electronic sensing with a β-amino enone linked, triazine-containing 2D covalent organic framework</strong>" https://nature-research-under-consideration.nature.com/users/37265-nature-communications/posts/47951-a-real-time-optical-and-electronic-chemical-sensor-based-on-a-amino-enone-linked-triazine-containing-2d-covalent-organic-framework]</p> <p>Fully-aromatic, two-dimensional covalent organic frameworks (2D COFs) are hailed as candidates for electronic and optical devices, yet to-date few applications emerged that make genuine use of their rational, predictive design principles and permanent pore structure. Here, we present a 2D COF made up of chemoresistant β-amino enone bridges and Lewis-basic triazine moieties that exhibits a dramatic real-time response in the visible spectrum and an increase in bulk conductivity by two orders of magnitude to a chemical trigger - corrosive HCl vapours. The optical and electronic response is fully reversible using a chemical switch (NH<sub>3</sub> vapours) or physical triggers (temperature or vacuum). These findings demonstrate a useful application of fully-aromatic 2D COFs as real-time responsive chemosensors and switches.</p>
Supplementary files for "Pressure-enhanced ferroelectric polarisation in polar perovskite-like [C2H5NH3]Na0.5Cr0.5(HCOO)3 metal-organic framework"
<p>DFT optimised structures for the paper: Pressure-enhanced ferroelectric polarisation in polar perovskite-like [C2H5NH3]Na0.5Cr0.5(HCOO)3 metal-organic framework. See the paper for additional information on the computational setup.</p> <p>Files are named HP or LP for high-pressure and low-pressure phases, followed by the pressure as calculated by DFT. The HP structure was optimized in two different space groups and are labelled accordingly. The DFT optimized structure without volume restrictions is found in opt-vol.POSCAR</p> <p> </p>
Role of energy migration in the efficiency of upconversion-based resonance energy transfer to organic acceptors
<p>Graphs, data set and algorithms (in Matlab) for the article:</p> <div>Kotulska, A. M., Prorok, K., Bezkrovnyi, O., Pilch-Wrobel, A., & Bednarkiewicz, A. (2024). Role of energy migration in the efficiency of upconversion-based resonance energy transfer to organic acceptors. <em>Journal of Luminescence</em>, <em>275</em>, 120823. https://doi.org/10.1016/J.JLUMIN.2024.120823</div> <p>(https://www.sciencedirect.com/science/article/pii/S0022231324003879)<br>Abstract: Lanthanide (Ln)-doped upconverting nanocrystals (LnNPs) exhibit suitable features as energy donors for Förster resonance energy transfer (FRET). The sensitivity of biosensors can be improved by optically active materials with anti-Stokes emission, narrowband absorption and emission spectral lines, and long luminescence lifetimes. In contrast to energy reabsorption, energy transfer between the upconversion nanocrystals (UCNPs) and organic dyes attached to their surface can be observed through donor emission quenching and acceptor emission and decreases in the luminescence lifetimes of donors. Although the emission spectra confirmed that FRET occurred from the Er3+ ions to the Rose Bengal acceptor, the luminescence lifetimes were generally not affected by the presence of the acceptor. The Ln3+ dopant in LnNPs, which typically has 20–100 % Yb3+ sensitizer ions and 0.2–2% activator (Er3+/Tm3+/Ho3+) ions, results in hundreds to thousands of Ln3+ ions in a single UCNP. The interaction between multiple Ln3+ ions results in significant energy migration and storage in the Yb3+ sensitizer network, which is often recharged with the energy of the Er3+ ions when they emit and nonradiatively transfer their energy to acceptor species. However, the energy transfer mechanisms could not be unambiguously determined through spectroscopic data due to the nature the upconversion process. Studies confirmed that the energy migration distance was significantly shortened when the LnNP surface contained acceptors; this affected the energy storage and ‘recharging’ capability of the Yb3+ sensitizer network within the UCNPs. These results provide hints on the future use of LnNP as effective FRET probes, in which the highest possible absorption cross section and possibly lowest dopant concentration should be maintained.<br>Keywords: Nanocrystals; Resonance energy transfer; FRET; Monte Carlo; Lanthanide ions</p>
Gridded spatial information on soil organic carbon content, density and stock in Hungary for 1992 and 2000
<p>Predictive soil organic carbon (SOC) content, density, and stock maps, along with the associated prediction uncertainty, are provided for the years 1992 and 2000, for the entire territory of Hungary. The maps refer to the topsoils (0–30 cm) with a spatial resolution of 100⨯100 m. The uncertainty associated with the SOC property maps is expressed by the lower and upper limits of the 90% prediction interval (PI), the range of values within which the true value is expected to occur 9 times out of 10. This means that there are two maps to each SOC property map, quantifying its prediction uncertainty. It should be added that all maps have been masked with open water bodies, as these areas are not relevant for soils.</p> <p><strong>For more details / to cite this dataset please use:</strong></p> <p><a href="https://doi.org/10.1038/s41597-024-04158-3">Szatmári, G., Laborczi, A., Mészáros, J., Takács, K., Benő, A., Koós, S., Bakacsi, Z., & Pásztor, L. (2024). Gridded, temporally referenced spatial information on soil organic carbon for Hungary. Scientific Data 11, 1312.</a></p> <p><strong>Custom code used for digital soil mapping and validation is available on GitHub:</strong></p> <p><a href="https://github.com/GaborSzatmari/HU-SOC-mapping" target="_blank" rel="noopener">https://github.com/GaborSzatmari/HU-SOC-mapping</a></p> <p><strong>Description of the files:</strong></p> <p>The resulting maps are shared as GeoTIFF files. The coordinate reference system is the Hungarian Unified National Projection System (HD72/EOV; EPSG: 23700) (<a href="https://epsg.io/23700" target="_blank" rel="noopener">https://epsg.io/23700</a>). The table below provides further information on the published maps. Note that the first file (00_Overview.jpg) gives an overview of the SOC property maps.</p> <table> <tbody> <tr> <td> <p><strong>SOC property maps</strong></p> </td> <td> <p><strong>Unit</strong></p> </td> <td> <p><strong>Year</strong></p> </td> <td> <p><strong>Filename</strong></p> </td> </tr> <tr> <td> <p>SOC content map</p> </td> <td> <p>[g ∙ kg<sup>-1</sup>]</p> </td> <td> <p>1992</p> </td> <td> <p>SOCc_0_30cm_1992_pred.tif</p> </td> </tr> <tr> <td> <p>SOC content, lower limit of the 90% PI</p> </td> <td> <p>[g ∙ kg<sup>-1</sup>]</p> </td> <td> <p>1992</p> </td> <td> <p>SOCc_0_30cm_1992_q05.tif</p> </td> </tr> <tr> <td> <p>SOC content, upper limit of the 90% PI</p> </td> <td> <p>[g ∙ kg<sup>-1</sup>]</p> </td> <td> <p>1992</p> </td> <td> <p>SOCc_0_30cm_1992_q95.tif</p> </td> </tr> <tr> <td> <p>SOC density map</p> </td> <td> <p>[kg ∙ m<sup>-3</sup>]</p> </td> <td> <p>1992</p> </td> <td> <p>SOCd_0_30cm_1992_pred.tif</p> </td> </tr> <tr> <td> <p>SOC density, lower limit of the 90% PI</p> </td> <td> <p>[kg ∙ m<sup>-3</sup>]</p> </td> <td> <p>1992</p> </td> <td> <p>SOCd_0_30cm_1992_q05.tif</p> </td> </tr> <tr> <td> <p>SOC density, upper limit of the 90% PI</p> </td> <td> <p>[kg ∙ m<sup>-3</sup>]</p> </td> <td> <p>1992</p> </td> <td> <p>SOCd_0_30cm_1992_q95.tif</p> </td> </tr> <tr> <td> <p>SOC stock map</p> </td> <td> <p>[tons ∙ ha<sup>-1</sup>]</p> </td> <td> <p>1992</p> </td> <td> <p>SOCs_0_30cm_1992_pred.tif</p> </td> </tr> <tr> <td> <p>SOC stock, lower limit of the 90% PI</p> </td> <td> <p>[tons ∙ ha<sup>-1</sup>]</p> </td> <td> <p>1992</p> </td> <td> <p>SOCs_0_30cm_1992_q05.tif</p> </td> </tr> <tr> <td> <p>SOC stock, upper limit of the 90% PI</p> </td> <td> <p>[tons ∙ ha<sup>-1</sup>]</p> </td> <td> <p>1992</p> </td> <td> <p>SOCs_0_30cm_1992_q95.tif</p> </td> </tr> <tr> <td> <p>SOC content map</p> </td> <td> <p>[g ∙ kg<sup>-1</sup>]</p> </td> <td> <p>2000</p> </td> <td> <p>SOCc_0_30cm_2000_pred.tif</p> </td> </tr> <tr> <td> <p>SOC content, lower limit of the 90% PI</p> </td> <td> <p>[g ∙ kg<sup>-1</sup>]</p> </td> <td> <p>2000</p> </td> <td> <p>SOCc_0_30cm_2000_q05.tif</p> </td> </tr> <tr> <td> <p>SOC content, upper limit of the 90% PI</p> </td> <td> <p>[g ∙ kg<sup>-1</sup>]</p> </td> <td> <p>2000</p> </td> <td> <p>SOCc_0_30cm_2000_q95.tif</p> </td> </tr> <tr> <td> <p>SOC density map</p> </td> <td> <p>[kg ∙ m<sup>-3</sup>]</p> </td> <td> <p>2000</p> </td> <td> <p>SOCd_0_30cm_2000_pred.tif</p> </td> </tr> <tr> <td> <p>SOC density, lower limit of the 90% PI</p> </td> <td> <p>[kg ∙ m<sup>-3</sup>]</p> </td> <td> <p>2000</p> </td> <td> <p>SOCd_0_30cm_2000_q05.tif</p> </td> </tr> <tr> <td> <p>SOC density, upper limit of the 90% PI</p> </td> <td> <p>[kg ∙ m<sup>-3</sup>]</p> </td> <td> <p>2000</p> </td> <td> <p>SOCd_0_30cm_2000_q95.tif</p> </td> </tr> <tr> <td> <p>SOC stock map</p> </td> <td> <p>[tons ∙ ha<sup>-1</sup>]</p> </td> <td> <p>2000</p> </td> <td> <p>SOCs_0_30cm_2000_pred.tif</p> </td> </tr> <tr> <td> <p>SOC stock, lower limit of the 90% PI</p> </td> <td> <p>[tons ∙ ha<sup>-1</sup>]</p> </td> <td> <p>2000</p> </td> <td> <p>SOCs_0_30cm_2000_q05.tif</p> </td> </tr> <tr> <td> <p>SOC stock, upper limit of the 90% PI</p> </td> <td> <p>[tons ∙ ha<sup>-1</sup>]</p> </td> <td> <p>2000</p> </td> <td> <p>SOCs_0_30cm_2000_q95.tif</p> </td> </tr> </tbody> </table> <p> </p>
Habitat data for microbial organisms
<p>Data on habitats of microbial organisms derived from the following sources:</p> <p>Adam, R.D., 2017. Diplomonadida, in: Archibald, J.M., Simpson, A.G.B., Slamovits, C.H., Margulis, L., Melkonian, M., Chapman, D.J., Corliss, J.O. (Eds.), Handbook of the Protists. Springer International Publishing, Cham, pp. 1–28. <a href="https://doi.org/10.1007/978-3-319-32669-6_1-1" target="_blank" rel="nofollow noopener">https://doi.org/10.1007/978-3-319-32669-6_1-1</a></p> <p>Agatha S (2011) Global Diversity of Aloricate Oligotrichea (Protista, Ciliophora, Spirotricha) in Marine and Brackish Sea Water. PLoS ONE 6(8): e22466. <a href="https://doi.org/10.1371/journal.pone.0022466" target="_blank" rel="nofollow noopener">https://doi.org/10.1371/journal.pone.0022466</a></p> <p>Alker AP, Smith GW, Kim K. 2001. Characterization of Aspergillus sydowii (Thom et Church), a fungal pathogen of Caribbean sea fan corals. Hydrobiologia 460:105–11.</p> <p>Baldauf S.L., Strassmann J.E. (2017) Dictyostelia. In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham. <a href="https://doi.org/10.1007/978-3-319-32669-6_14-1" target="_blank" rel="nofollow noopener">https://doi.org/10.1007/978-3-319-32669-6_14-1</a></p> <p>Baumgartner, M., Eberhardt, S., De Jonckheere, J. F., & Stetter, K. O. (2009). Tetramitus thermacidophilus n. sp., an amoeboflagellate from acidic hot springs. Journal of Eukaryotic Microbiology 56:201–206. <a href="https://doi.org/10.1111/j.1550-7408.2009.00390.x" target="_blank" rel="nofollow noopener">https://doi.org/10.1111/j.1550-7408.2009.00390.x</a></p> <p>Beakes G.W., Thines M. (2016) Hyphochytriomycota and Oomycota. In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham. <a href="https://doi.org/10.1007/978-3-319-32669-6_26-1" target="_blank" rel="nofollow noopener">https://doi.org/10.1007/978-3-319-32669-6_26-1</a></p> <p>Bennett R.M., Honda D., Beakes G.W., Thines M. (2017) Labyrinthulomycota. In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham. <a href="https://doi.org/10.1007/978-3-319-32669-6_25-1" target="_blank" rel="nofollow noopener">https://doi.org/10.1007/978-3-319-32669-6_25-1</a></p> <p>Bernard, Catherine, Alastair G. B. Simpson & David J. Patterson (2000) Some free-living flagellates (protista) from anoxic habitats Ophelia 52(2):113-142. <a href="https://doi.org/10.1080/00785236.1999.10409422" target="_blank" rel="nofollow noopener">https://doi.org/10.1080/00785236.1999.10409422</a></p> <p>Bigelow, D. M., Olsen, M. W., & Gilbertson, R. L. (2005). Labyrinthula terrestris sp. nov., a new pathogen of turf grass. Mycologia 97:185–190. <a href="https://doi.org/10.1080/15572536.2006.11832852" target="_blank" rel="nofollow noopener">https://doi.org/10.1080/15572536.2006.11832852</a></p> <p>Bishop, A. (1935). Observations upon a “Trichomonas” from pond water. Parasitology 27:246–256. <a href="https://doi.org/10.1017/S0031182000015110" target="_blank" rel="nofollow noopener">https://doi.org/10.1017/S0031182000015110</a></p> <p>Boltovskoy D., Anderson O.R., Correa N.M. (2017) Radiolaria and Phaeodaria. In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham. <a href="https://doi.org/10.1007/978-3-319-32669-6_19-2" target="_blank" rel="nofollow noopener">https://doi.org/10.1007/978-3-319-32669-6_19-2</a></p> <p>Borodina, A.S., Mylnikov, A.P., Janouškovec, J., Keeling, P.J. and Tikhonenkov, D.V., 2021. The Morphology, Ultrastructure and Molecular Phylogeny of a New Freshwater Heterolobose Amoeba Parafumarolamoeba stagnalis n. sp.(Vahlkampfiidae; Heterolobosea). Diversity, 13(9), p.433. <a href="https://doi.org/10.3390/d13090433" target="_blank" rel="nofollow noopener">https://doi.org/10.3390/d13090433</a></p> <p>Bourland, W. A. & Struder-Kypke, M. C. 2010. Agolohymena aspidocauda nov. gen., nov. spec., a histophagous freshwater tetrahymenid ciliate in the family Deltopylidae (Ciliophora, Hymenostomatia), from Idaho (northwest USA): morphology, ontogenesis and molecular phylogeny. Eur. J. Protistol. 46:221–242. <a href="https://doi.org/10.1016/j.ejop.2010.04.003" target="_blank" rel="nofollow noopener">https://doi.org/10.1016/j.ejop.2010.04.003</a></p> <p>Bradley, S.G. and Marciano-Cabral, F., 1996. Diversity of free-living ‘naked’amoeboid organisms. Journal of industrial microbiology and biotechnology, 17(3-4):314-321. <a href="https://doi.org/10.1007/BF01574706" target="_blank" rel="nofollow noopener">https://doi.org/10.1007/BF01574706</a></p> <p>Buaya, A. T., Ploch, S., Inaba, S., & Thines, M. (2019). Holocarpic oomycete parasitoids of red algae are not Olpidiopsis. Fungal systematics and evolution 4:21–31. <a href="https://doi.org/10.3114/fuse.2019.04.03" target="_blank" rel="nofollow noopener">https://doi.org/10.3114/fuse.2019.04.03</a></p> <p>Bulman S., Neuhauser S. (2016) Phytomyxea. In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham. <a href="https://doi.org/10.1007/978-3-319-32669-6_24-1" target="_blank" rel="nofollow noopener">https://doi.org/10.1007/978-3-319-32669-6_24-1</a></p> <p>Cavalier-Smith, T., Chao, E.E.-Y., 2006. Phylogeny and megasystematics of phagotrophic heterokonts (kingdom Chromista). J. Mol. Evol. 62, 388–420. <a href="https://doi.org/10.1007/s00239-004-0353-8" target="_blank" rel="nofollow noopener">https://doi.org/10.1007/s00239-004-0353-8</a></p> <p>Cavalier-Smith, Thomas & Ema E. Chao. (2012) Oxnerella micra sp. n. (Oxnerellidae fam. n.), a Tiny Naked Centrohelid, and the Diversity and Evolution of Heliozoa. Protist 163(4):574-601. <a href="https://doi.org/10.1016/j.protis.2011.12.005" target="_blank" rel="nofollow noopener">https://doi.org/10.1016/j.protis.2011.12.005</a></p> <p>Cepicka, I., Hampl, V., Kulda, J., 2010. Critical Taxonomic Revision of Parabasalids with Description of one New Genus and three New Species. Protist 161:400–433. <a href="https://doi.org/10.1016/j.protis.2009.11.005" target="_blank" rel="nofollow noopener">https://doi.org/10.1016/j.protis.2009.11.005</a></p> <p>Cho, Anna, Denis V. Tikhonenkov, Elisabeth Hehenberger, Anna Karnkowska, Alexander P. Mylnikov, and Patrick J. Keeling. 2022. Monophyly of Diverse Bigyromonadea and their Impact on Phylogenomic Relationships Within Stramenopiles. Molecular Phylogenetics and Evolution 171: 107468. <a href="https://doi.org/10.1016/j.ympev.2022.107468" target="_blank" rel="nofollow noopener">https://doi.org/10.1016/j.ympev.2022.107468</a></p> <p>Clarke, A., 2014. The thermal limits to life on Earth. International Journal of Astrobiology 13, 141–154. <a href="https://doi.org/10.1017/S147355041300043" target="_blank" rel="nofollow noopener">https://doi.org/10.1017/S147355041300043</a></p> <p>Cook, M.E., Graham, L.E., 2016. Chlorokybophyceae, Klebsormidiophyceae, Coleochaetophyceae, in: Archibald, J.M., Simpson, A.G.B., Slamovits, C.H., Margulis, L., Melkonian, M., Chapman, D.J., Corliss, J.O. (Eds.), Handbook of the Protists. Springer International Publishing, Cham, pp. 1–20. <a href="https://doi.org/10.1007/978-3-319-32669-6_36-1" target="_blank" rel="nofollow noopener">https://doi.org/10.1007/978-3-319-32669-6_36-1</a></p> <p>D’Amico, S., Collins, T., Marx, J.-C., Feller, G., Gerday, C., 2006. Psychrophilic microorganisms: challenges for life. EMBO Rep 7, 385–389. <a href="https://doi.org/10.1038/sj.embor.7400662" target="_blank" rel="nofollow noopener">https://doi.org/10.1038/sj.embor.7400662</a></p> <p>Darienko T, Rad-Menéndez C, Campbell CN, Pröschold T. 2021. Molecular Phylogeny of Unicellular Marine Coccoid Green Algae Revealed New Insights into the Systematics of the Ulvophyceae (Chlorophyta). Microorganisms 9(8):1586. <a href="https://doi.org/10.3390/microorganisms9081586" target="_blank" rel="nofollow noopener">https://doi.org/10.3390/microorganisms9081586</a></p> <p>De Jonckheere, J.F., Baumgartner, M., Opperdoes, F.R. and Stetter, K.O., 2009. Marinamoeba thermophila, a new marine heterolobosean amoeba growing at 50° C. European journal of protistology, 45(3), pp.231-236. <a href="https://doi.org/10.1016/j.ejop.2009.01.001" target="_blank" rel="nofollow noopener">https://doi.org/10.1016/j.ejop.2009.01.001</a></p> <p>Dee, J.M., Mollicone, M., Longcore, J.E., Roberson, R.W., Berbee, M.L., 2015. Cytology and molecular phylogenetics of Monoblepharidomycetes provide evidence for multiple independent origins of the hyphal habit in the Fungi. Mycologia 107, 710–728. <a href="https://doi.org/10.3852/14-275" target="_blank" rel="nofollow noopener">https://doi.org/10.3852/14-275</a></p> <p>Dewel, R. A., J. D. Joines, and J. J. Bond. 1985. A new chytridiomycete parasitizing the tardigrade Milnesium tardigradum. Canad. J. Bot. 63:1525- 1534. <a href="https://doi.org/10.1139/b85-211" target="_blank" rel="nofollow noopener">https://doi.org/10.1139/b85-211</a></p> <p>Dykstra M, Olive L. 1975. An unusual sorocarp-producing Protist. Mycologia 67 (4):873–879. <a href="https://doi.org/10.1080/00275514.1975.12019815" target="_blank" rel="nofollow noopener">https://doi.org/10.1080/00275514.1975.12019815</a></p> <p>Dykstra, M. J. Porter, D. 1984. Diplophrys marina, a New Scale-Forming Marine Protist with Labyrinthulid Affinities. Mycologia 76(4):626. <a href="https://doi.org/10.2307/3793219" target="_blank" rel="nofollow noopener">https://doi.org/10.2307/3793219</a></p> <p>Eikrem W. et al. (2017) Haptophyta. In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham. <a href="https://doi.org/10.1007/978-3-319-32669-6_38-2" target="_blank" rel="nofollow noopener">https://doi.org/10.1007/978-3-319-32669-6_38-2</a></p> <p>Eliáš, M., Amaral, R., Fawley, K.P., Fawley, M.W., Němcová, Y., Neustupa, J., Přibyl, P., Santos, L.M.A., Ševčíková, T., 2017. Eustigmatophyceae, in: Archibald, J.M., Simpson, A.G.B., Slamovits, C.H., Margulis, L., Melkonian, M., Chapman, D.J., Corliss, J.O. (Eds.), Handbook of the Protists. Springer International Publishing, Cham, pp. 1–39. <a href="https://doi.org/10.1007/978-3-319-32669-6_39-1" target="_blank" rel="nofollow noopener">https://doi.org/10.1007/978-3-319-32669-6_39-1</a></p> <p>Embree, R.W. and Indoh, H., 1967. Aquamortierella, a new genus in the Mucorales. Bulletin of the Torrey Botanical Club, pp.464-467. <a href="https://doi.org/10.2307/2483563" target="_blank" rel="nofollow noopener">https://doi.org/10.2307/2483563</a></p> <p>Emerson, R., & Natvig, D. O. (1981). Adaptation of fungi to stagnant waters. In D. T. Wicklow & G. C. Carroll (Eds.), The fungal community, its organization and role in the ecosystem (pp. 109–128). New York: Marcel Dekker.</p> <p>Farmer, M. A. (1993). Ultrastructure of Ditrichomonas honigbergii n. g., n. sp. (Parabasalia) and its relationships to amitochondrial protists. The Journal of Eukaryotic Microbiology 40:619–626. <a href="https://doi.org/10.1111/j.1550-7408.1993.tb06119.x" target="_blank" rel="nofollow noopener">https://doi.org/10.1111/j.1550-7408.1993.tb06119.x</a></p> <p>Fawley, K.P., Fawley, M.W., 2007. Observations on the diversity and ecology of freshwater Nannochloropsis (Eustigmatophyceae), with descriptions of new taxa. Protist 158(3): 325-336. <a href="https://doi.org/10.1016/j.protis.2007.03.003" target="_blank" rel="nofollow noopener">https://doi.org/10.1016/j.protis.2007.03.003</a></p> <p>Fawley, M.W., Jameson, I., Fawley, K.P., 2015. The phylogeny of the genus Nannochloropsis (Monodopsidaceae, Eustigmatophyceae), with descriptions of N. australis sp. nov. and Microchloropsis gen. nov. Phycologia 54(5): 545-552. <a href="https://doi.org/10.2216/15-60.1" target="_blank" rel="nofollow noopener">https://doi.org/10.2216/15-60.1</a></p> <p>Fell, J.W., Statzell, A.C., Hunter, I.L. and Phaff, H.J., 1969. Leucosporidium gen. n., the heterobasidiomycetous stage of several yeasts of the genus Candida. Antonie van Leeuwenhoek, 35(1), pp.433-462.</p> <p>Figueroa‐Martinez, F., Nedelcu, A.M., Smith, D.R., Reyes‐Prieto, A., 2015. When the lights go out: the evolutionary fate of free‐living colorless green algae. New Phytol 206, 972–982. <a href="https://doi.org/10.1111/nph.13279" target="_blank" rel="nofollow noopener">https://doi.org/10.1111/nph.13279</a></p> <p>Foissner, W., 2000. A compilation of soil and moss ciliates (Protozoa, Ciliophora) from Germany, with new records and descriptions of new and insufficiently known species. European Journal of Protistology 36:253–283. <a href="https://doi.org/10.1016/S0932-4739" target="_blank" rel="nofollow noopener">https://doi.org/10.1016/S0932-4739</a>(00)80003-6</p> <p>Fritsch, F.E., 1944. Cladophorella calcicola nov. gen. et sp., a terrestrial member of the Cladophorales. Annals of Botany, 8(30/31), pp.157-171. <a href="https://www.jstor.org/stable/42908460" target="_blank" rel="nofollow noopener">https://www.jstor.org/stable/42908460</a></p> <p>Gao, F., Warren, A., Zhang, Q., Gong, J., Miao, M., Sun, P., Xu, D., Huang, J., Yi, Z., Song, W., 2016. The All-Data-Based Evolutionary Hypothesis of Ciliated Protists with a Revised Classification of the Phylum Ciliophora (Eukaryota, Alveolata). Scientific Reports 6:24874. <a href="https://doi.org/10.1038/srep24874" target="_blank" rel="nofollow noopener">https://doi.org/10.1038/srep24874</a></p> <p>Garstecki, T., Brown, S., & De Jonckheere, J. F. (2005). Description of Vahlkampfia signyensis n. sp. (Heterolobosea), based on morphological, ultrastructural and molecular characteristics. European Journal of Protistology 41:119–127. <a href="https://doi.org/10.1016/j.ejop.2005.01.003" target="_blank" rel="nofollow noopener">https://doi.org/10.1016/j.ejop.2005.01.003</a></p> <p>Gast, R.J., 2017. Centrohelida and Other Heliozoan-Like Protists, in: Archibald, J.M., Simpson, A.G.B., Slamovits, C.H., Margulis, L., Melkonian, M., Chapman, D.J., Corliss, J.O. (Eds.), Handbook of the Protists. Springer International Publishing, Cham, pp. 1–17. <a href="https://doi.org/10.1007/978-3-319-32669-6_28-1" target="_blank" rel="nofollow noopener">https://doi.org/10.1007/978-3-319-32669-6_28-1</a></p> <p>Geisen, S., Bonkowski, M., Zhang, J. and De Jonckheere, J.F., 2015. Heterogeneity in the genus Allovahlkampfia and the description of the new genus Parafumarolamoeba (Vahlkampfiidae; Heterolobosea). European Journal of Protistology, 51(4), pp.335-349. <a href="https://doi.org/10.1016/j.ejop.2015.05.003" target="_blank" rel="nofollow noopener">https://doi.org/10.1016/j.ejop.2015.05.003</a></p> <p>Glockling, S.L., Marshall, W.L., Gleason, F.H., 2013. Phylogenetic interpretations and ecological potentials of the Mesomycetozoea (Ichthyosporea). Fungal Ecology 6, 237–247. <a href="https://doi.org/10.1016/j.funeco.2013.03.005" target="_blank" rel="nofollow noopener">https://doi.org/10.1016/j.funeco.2013.03.005</a></p> <p>Glücksman, E., Snell, E.A., Berney, C., Chao, E.E., Bass, D. and Cavalier-Smith, T., 2011. The novel marine gliding zooflagellate genus Mantamonas (Mantamonadida ord. n.: Apusozoa). Protist, 162(2), pp.207-221. <a href="https://doi.org/10.1016/j.protis.2010.06.004" target="_blank" rel="nofollow noopener">https://doi.org/10.1016/j.protis.2010.06.004</a></p> <p>Gomaa F, Mitchell EAD, Lara E. 2013. Amphitremida (Poche, 1913) Is a New Major, Ubiquitous Labyrinthulomycete Clade. PLoS ONE 8(1): e53046. <a href="https://doi.org/10.1371/journal.pone.0053046" target="_blank" rel="nofollow noopener">https://doi.org/10.1371/journal.pone.0053046</a></p> <p>Gong, S., Li, Z., Zhang, F., Xiao, Y. and Cheng, H., 2018. Symbiochlorum hainanensis gen. et sp. nov.(Ulvophyceae, Chlorophyta) isolated from bleached corals living in the South China Sea. Journal of phycology, 54(6), pp.811-817. <a href="https://doi.org/10.1111/jpy.12779" target="_blank" rel="nofollow noopener">https://doi.org/10.1111/jpy.12779</a></p> <p>Graf, L., Yang, E.C., Boo, G.H., Andersen, R.A., Yoon, H.S., 2020. Further investigations on the PHAEOTHAMNIOPHYCEAE using a multigene phylogeny, with descriptions of five new species. Journal of Phycology 56, 358–379. <a href="https://doi.org/10.1111/jpy.12950" target="_blank" rel="nofollow noopener">https://doi.org/10.1111/jpy.12950</a></p> <p>Hall J.D., McCourt R. (2017) Zygnematophyta. In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham. <a href="https://doi.org/10.1007/978-3-319-32669-6_41-2" target="_blank" rel="nofollow noopener">https://doi.org/10.1007/978-3-319-32669-6_41-2</a></p> <p>Hampl V. (2016) Preaxostyla. In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham. <a href="https://doi.org/10.1007/978-3-319-32669-6_8-1" target="_blank" rel="nofollow noopener">https://doi.org/10.1007/978-3-319-32669-6_8-1</a></p> <p>Hehenberger, E., Tikhonenkov, D.V., Kolisko, M., Del Campo, J., Esaulov, A.S., Mylnikov, A.P. and Keeling, P.J., 2017. Novel predators reshape holozoan phylogeny and reveal the presence of a two-component signaling system in the ancestor of animals. Current Biology, 27(13), pp.2043-2050. <a href="https://doi.org/10.1016/j.cub.2017.06.006" target="_blank" rel="nofollow noopener">https://doi.org/10.1016/j.cub.2017.06.006</a></p> <p>Heiss, A.A., Brown, M.W., Simpson, A.G.B., 2016. Apusomonadida, in: Archibald, J.M., Simpson, A.G.B., Slamovits, C.H., Margulis, L., Melkonian, M., Chapman, D.J., Corliss, J.O. (Eds.), Handbook of the Protists. Springer International Publishing, Cham, pp. 1–27. <a href="https://doi.org/10.1007/978-3-319-32669-6_15-1" target="_blank" rel="nofollow noopener">https://doi.org/10.1007/978-3-319-32669-6_15-1</a></p> <p>Ho, H. H., & Jong, S. C. (1990). Halophytophthora gen. nov., a new member of the family Pythiaceae. Mycotaxon 19:377–382.</p> <p>Hoef-Emden, K., 2005. Multiple Independent Losses of Photosynthesis and Differing EvolutionaryRates in the Genus Cryptomonas (Cryptophyceae): Combined Phylogenetic Analyses of DNA Sequences of the Nuclear and the Nucleomorph Ribosomal Operons. J Mol Evol 60, 183–195. <a href="https://doi.org/10.1007/s00239-004-0089-5" target="_blank" rel="nofollow noopener">https://doi.org/10.1007/s00239-004-0089-5</a></p> <p>Hoef-Emden, K., Archibald, J.M., 2016. Cryptophyta (Cryptomonads), in: Archibald, J.M., Simpson, A.G.B., Slamovits, C.H., Margulis, L., Melkonian, M., Chapman, D.J., Corliss, J.O. (Eds.), Handbook of the Protists. Springer International Publishing, Cham, pp. 1–41. <a href="https://doi.org/10.1007/978-3-319-32669-6_35-1" target="_blank" rel="nofollow noopener">https://doi.org/10.1007/978-3-319-32669-6_35-1</a></p> <p>Holzinger, A., Lütz, C., & Karsten, U. (2011). Desiccation stress causes structural and ultrastructural alterations in the aeroterrestrial green alga Klebsormidium crenulatum (Klebsormidiophyceae, Streptophyta) isolated from an alpine soil crust. Journal of Phycology, 47, 591–602. <a href="https://doi.org/10.1111/j.1529-8817.2011.00980.x" target="_blank" rel="nofollow noopener">https://doi.org/10.1111/j.1529-8817.2011.00980.x</a></p> <p>Horiguchi T. (2016) Raphidophyceae (Raphidophyta). In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham. <a href="https://doi.org/10.1007/978-3-319-32669-6_37-1" target="_blank" rel="nofollow noopener">https://doi.org/10.1007/978-3-319-32669-6_37-1</a></p> <p>Howe, A.T., Bass, D., Scoble, J.M., Lewis, R., Vickerman, K., Arndt, H., Cavalier-Smith, T., 2011. Novel Cultured Protists Identify Deep-branching Environmental DNA Clades of Cercozoa: New Genera Tremula, Micrometopion, Minimassisteria, Nudifila, Peregrinia. Protist 162, 332–372. <a href="https://doi.org/10.1016/j.protis.2010.10.002" target="_blank" rel="nofollow noopener">https://doi.org/10.1016/j.protis.2010.10.002</a></p> <p>Huang, J.-H., Chen, C.-Y., Lin, Y.-H., Ann, P.-J., Huang, H.-C., & Chung, W.-H. (2012). Six new species of Pythiogeton in Taiwan, with an account of the molecular phylogeny of this genus. Mycoscience, 54:130–147. <a href="https://doi.org/10.1016/j.myc.2012.09.007" target="_blank" rel="nofollow noopener">https://doi.org/10.1016/j.myc.2012.09.007</a></p> <p>Ichinomiya, M., dos Santos, A.L., Gourvil, P., Yoshikawa, S., Kamiya, M., Ohki, K., Audic, S., de Vargas, C., Noël, M.-H., Vaulot, D., Kuwata, A., 2016. Diversity and oceanic distribution of the Parmales (Bolidophyceae), a picoplanktonic group closely related to diatoms. ISME J 10, 2419–2434. <a href="https://doi.org/10.1038/ismej.2016.38" target="_blank" rel="nofollow noopener">https://doi.org/10.1038/ismej.2016.38</a></p> <p>Jaške, K., Barcytė, D., Pánek, T., Ševčíková, T., Eliášová, A., Eliáš, M., 2022. The net-like heterotrophic amoeba Leukarachnion salinum sp. nov. (Ochrophyta, Stramenopiles) has a cryptic plastid. bioRxiv.\ <a href="https://doi.org/10.1101/2022.04.05.487141" target="_blank" rel="nofollow noopener">https://doi.org/10.1101/2022.04.05.487141</a></p> <p>Jee HJ, Ho HH, Cho WD, 2000. Pythiogeton zeae sp. nov. causing root and basal stalk rot of corn in Korea. Mycologia 92: 522e527. <a href="https://doi.org/10.1080/00275514.2000.12061188" target="_blank" rel="nofollow noopener">https://doi.org/10.1080/00275514.2000.12061188</a></p> <p>Kachalkin, A.V., 2014. Yeasts of the White Sea intertidal zone and description of Glaciozyma litorale sp. nov. Antonie van Leeuwenhoek, 105(6), pp.1073-1083. <a href="https://doi.org/10.1007/s10482-014-0165-9" target="_blank" rel="nofollow noopener">https://doi.org/10.1007/s10482-014-0165-9</a></p> <p>Kai, A., Yoshii, Y., Nakayama, T. and Inouye, I., 2008. Aurearenophyceae classis nova, a new class of Heterokontophyta based on a new marine unicellular alga Aurearena cruciata gen. et sp. nov. inhabiting sandy beaches. Protist, 159(3), pp.435-457. <a href="https://doi.org/10.1016/j.protis.2007.12.003" target="_blank" rel="nofollow noopener">https://doi.org/10.1016/j.protis.2007.12.003</a></p> <p>Kawai H., Henry E.C. (2016) Phaeophyta. In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham. <a href="https://doi.org/10.1007/978-3-319-32669-6_31-1" target="_blank" rel="nofollow noopener">https://doi.org/10.1007/978-3-319-32669-6_31-1</a> <a href="https://doi.org/10.1007/978-3-319-32669-6_31-1" target="_blank" rel="nofollow noopener">https://doi.org/10.1007/978-3-319-32669-6_31-1</a></p> <p>Keeling, P.J., 2016. Chlorarachniophytes, in: Archibald, J.M., Simpson, A.G.B., Slamovits, C.H., Margulis, L., Melkonian, M., Chapman, D.J., Corliss, J.O. (Eds.), Handbook of the Protists. Springer International Publishing, Cham, pp. 1–17. <a href="https://doi.org/10.1007/978-3-319-32669-6_34-1" target="_blank" rel="nofollow noopener">https://doi.org/10.1007/978-3-319-32669-6_34-1</a></p> <p>Kirill A. Mikrjukov & Irina Milyutina (2001) Heliozoa as a component of marine Microbenthos: A study of heliozoa of the White Sea, Ophelia 54(1):51-73. <a href="https://doi.org/10.1080/00785326.2001.10409455" target="_blank" rel="nofollow noopener">https://doi.org/10.1080/00785326.2001.10409455</a></p> <p>Kostygov, A.Y., Karnkowska, A., Votýpka, J., Tashyreva, D., Maciszewski, K., Yurchenko, V., Luke, J., 2021. Euglenozoa: taxonomy, diversity and ecology, symbioses and viruses. Open Biology 11:200407. <a href="https://doi.org/10.1098/rsob.200407" target="_blank" rel="nofollow noopener">https://doi.org/10.1098/rsob.200407</a></p> <p>Kristiansen, J., Škaloud, P., 2016. Chrysophyta, in: Archibald, J.M., Simpson, A.G.B., Slamovits, C.H., Margulis, L., Melkonian, M., Chapman, D.J., Corliss, J.O. (Eds.), Handbook of the Protists. Springer International Publishing, Cham, pp. 1–38. <a href="https://doi.org/10.1007/978-3-319-32669-6_43-1" target="_blank" rel="nofollow noopener">https://doi.org/10.1007/978-3-319-32669-6_43-1</a></p> <p>Kubanek J, Jensen PR, Keifer PA, Sullards MC, Collins DO, Fenical W. 2003. Seaweed resistance to microbial attack: a targeted chemical defence against marine fungi. Proc. Natl. Acad. Sci. USA 100: 6916–21. <a href="https://doi.org/10.1073/pnas.1131855100" target="_blank" rel="nofollow noopener">https://doi.org/10.1073/pnas.1131855100</a></p> <p>Kulda J., Nohýnková E., Čepička I. (2016) Retortamonadida (with Notes on Carpediemonas-Like Organisms and Caviomonadidae). In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham. <a href="https://doi.org/10.1007/978-3-319-32669-6_3-1" target="_blank" rel="nofollow noopener">https://doi.org/10.1007/978-3-319-32669-6_3-1</a></p> <p>Küpper FC, Maier I, Müller DG, Loiseaux-de Goer S, Guillou L. 2006. Phylogenetic affinities of two eukaryotic pathogens of marine macroalgae, Eurychasma dicksonii (Wright) Magnus and Chytridium polysiphoniae Cohn. Cryptogam. Algol. 27:165–84</p> <p>Leliaert, F., Smith, D.R., Moreau, H., Herron, M.D., Verbruggen, H., Delwiche, C.F., De Clerck, O., 2012. Phylogeny and Molecular Evolution of the Green Algae. Critical Reviews in Plant Sciences 31:1–46. <a href="https://doi.org/10.1080/07352689.2011.615705" target="_blank" rel="nofollow noopener">https://doi.org/10.1080/07352689.2011.615705</a></p> <p>Lepelletier, F., Karpov, S. A., Alacid, E., LePanse, S., Bigeard, E., Garces, E., Jeanthon, C., & Guillou, L. 2014. Dinomyces arenysensis gen. et sp. nov. (Rhizophydiales, Dinomycetaceae fam. nov.), a chytrid infecting marine dinoflagellates. Protist 165:230–244. <a href="https://doi.org/10.1016/j.protis.2014.02.004" target="_blank" rel="nofollow noopener">https://doi.org/10.1016/j.protis.2014.02.004</a></p> <p>Lester R.J.G., Hine P.M. (2017) Paramyxida. In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham. <a href="https://doi.org/10.1007/978-3-319-32669-6_21-1" target="_blank" rel="nofollow noopener">https://doi.org/10.1007/978-3-319-32669-6_21-1</a></p> <p>Lhee, D., Ha, J. S., Kim, S., Park, M. G., Bhattacharya, D., & Yoon, H. S. (2019). Evolutionary dynamics of the chromatophore genome in three photosynthetic Paulinella species. Scientific reports, 9(1), 2560. <a href="https://doi.org/10.1038/s41598-019-38621-8" target="_blank" rel="nofollow noopener">https://doi.org/10.1038/s41598-019-38621-8</a></p> <p>Li, S., Tan, H., Liu, B., Zhu, H., Hu, Z., Liu, G., 2021. Watanabeales ord. nov. and twelve novel species of Trebouxiophyceae (Chlorophyta). Journal of Phycology 57, 1167–1186. <a href="https://doi.org/10.1111/jpy.13165" target="_blank" rel="nofollow noopener">https://doi.org/10.1111/jpy.13165</a></p> <p>Lobban, C.S., Honda, D., Chihara, M. and Schefter, M., 1995. Chrysocystis fragilis gen. nov., sp. nov.(Chrysophyceae, Sarcinochrysidales), with Notes on Other Macroscopic. Micronesica, 28(1), pp.91-102.</p> <p>Lokhorst, G.M., Star, W. and Lukešová, A., 2000. The new species Hormidiella attenuata (Klebsormidiales), notes on morphology and reproduction. Algological Studies/Archiv für Hydrobiologie, Supplement Volumes, pp.11-27. <a href="https://doi.org/10.1127/algol_stud/100/2000/11" target="_blank" rel="nofollow noopener">https://doi.org/10.1127/algol_stud/100/2000/11</a></p> <p>Lukešová S, Karlicki M, Tomečková Hadariová L, Szabová J, Karnkowska A, Hampl V. 2020. Analyses of environmental sequences and two regions of chloroplast genomes revealed the presence of new clades of photosynthetic euglenids in marine environments. Environ. Microbiol. Rep. 12:78–91. <a href="https://doi.org/10.1111/17582229.12817" target="_blank" rel="nofollow noopener">https://doi.org/10.1111/17582229.12817</a></p> <p>Maistro S., Broady P., Andreoli C., Negrisolo E. (2016) Xanthophyceae. In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham. <a href="https://doi.org/10.1007/978-3-319-32669-6_30-1" target="_blank" rel="nofollow noopener">https://doi.org/10.1007/978-3-319-32669-6_30-1</a></p> <p>McCauley, L.A.R., Wehr, J.D., 2007. Taxonomic reappraisal of the freshwater brown algae Bodanella, Ectocarpus, Heribaudiella, and Pleurocladia (Phaeophyceae) on the basis of rbcL sequences and morphological characters. Phycologia 46, 429–439. <a href="https://doi.org/10.2216/05-08.1" target="_blank" rel="nofollow noopener">https://doi.org/10.2216/05-08.1</a></p> <p>McCauley, Linda Anne Roy. (2002) Phylogenetic Relationships of Freshwater Brown Algae (Phaeophycean) Based on Rubisco Large Subunit and Ribosomal DNA Sequences. ETD Collection for Fordham University. AAI13853687. <a href="https://research.library.fordham.edu/dissertations/AAI13853687" target="_blank" rel="nofollow noopener">https://research.library.fordham.edu/dissertations/AAI13853687</a></p> <p>McCourt, R.M., Karol, K.G., Hall, J.D., Casanova, M.T., Grant, M.C., 2017. Charophyceae (Charales), in: Archibald, J.M., Simpson, A.G.B., Slamovits, C.H., Margulis, L., Melkonian, M., Chapman, D.J., Corliss, J.O. (Eds.), Handbook of the Protists. Springer International Publishing, Cham, pp. 1–19. <a href="https://doi.org/10.1007/978-3-319-32669-6_40-2" target="_blank" rel="nofollow noopener">https://doi.org/10.1007/978-3-319-32669-6_40-2</a></p> <p>Mikhailyuk TI, Sluiman HJ, Massalski A, Mudimu O, Demchenko EM, Kondratyuk SY, Friedl T. 2008. New streptophyte green algae from terrestrial habitats and an assessment of the genus Interfilum (Klebsormidiophyceae, Streptophyta). J Phycol. 44(6):1586-603. <a href="https://doi.org/10.1111/j.1529-8817.2008.00606.x" target="_blank" rel="nofollow noopener">https://doi.org/10.1111/j.1529-8817.2008.00606.x</a></p> <p>Mikhailyuk, T., Lukešová, A., Glaser, K., Holzinger, A., Obwegeser, S., Nyporko, S., Friedl, T., & Karsten, U. (2018). New Taxa of Streptophyte Algae (Streptophyta) from Terrestrial Habitats Revealed Using an Integrative Approach. Protist, 169(3), 406–431. <a href="https://doi.org/10.1016/j.protis.2018.03.002" target="_blank" rel="nofollow noopener">https://doi.org/10.1016/j.protis.2018.03.002</a></p> <p>Mikrjukov, K. A. & Patterson, D. J. 2001. Taxonomy and phylogeny of Heliozoa. III. Actinophryids. Acta. Protozool. 40: 3–25.</p> <p>Mikrujkov, K. A. 1999. Taxonomic revision of scale-bearing heliozoon-like amoebae (Pompholyxophryidae, Rotosphaerida). Acta Protozoologica 38:119-131.</p> <p>Murtagh, G. J., Dyer, P. S., Rogerson, A., Nash, G. V. & Laybourn-Parry, J. 2002. A new species of Tetramitus in the benthos of a saline antarctic lake. Eur. J. Protistol. 37:437–443. <a href="https://doi.org/10.1078/0932-4739-00836" target="_blank" rel="nofollow noopener">https://doi.org/10.1078/0932-4739-00836</a></p> <p>Nagahama T, Hamamoto M, Nakase T, Takaki Y, Horikoshi K. 2003. Cryptococcus surugaensis sp. nov., a novel yeast species from sediment collected on the deep-sea floor of Suruga Bay. Int J Syst Evol Microbiol. 53 (Pt 6):2095-8. <a href="http://doi.org/10.1099/ijs.0.02712-0" target="_blank" rel="nofollow noopener">http://doi.org/10.1099/ijs.0.02712-0</a></p> <p>Nakayama, T., 2015. Biology, Diversity and Ecology of Free-Living Heterotrophic Flagellates, in: Ohtsuka, S., Suzaki, T., Horiguchi, T., Suzuki, N., Not, F. (Eds.), Marine Protists. Springer Japan, Tokyo, pp. 63–87. <a href="https://doi.org/10.1007/978-4-431-55130-0_4" target="_blank" rel="nofollow noopener">https://doi.org/10.1007/978-4-431-55130-0_4</a></p> <p>Nan, F., Feng, J., Lv, J. et al. Origin and evolutionary history of freshwater Rhodophyta: further insights based on phylogenomic evidence. Sci Rep 7, 2934 (2017). <a href="https://doi.org/10.1038/s41598-017-03235-5" target="_blank" rel="nofollow noopener">https://doi.org/10.1038/s41598-017-03235-5</a></p> <p>Newell, S. Y., Cefalu, R., & Fell, J. W. (1977). Myzocytium, Haptoglossa, and Gonimochaete (fungi) in littoral marine nematodes. Bulletin of Marine Science 27:177–207.</p> <p>Nitsche, F. (2014). Stephanoeca arndti spec. nov. - First cultivation success including molecular and autecological data from a freshwater acanthoecid choanoflagellate from Samoa. European Journal of Protistology, 50, 412–421. <a href="https://doi.org/10.1016/j.ejop.2014.03.004" target="_blank" rel="nofollow noopener">https://doi.org/10.1016/j.ejop.2014.03.004</a></p> <p>Nyvall, P., Pedersén, M., & Longcore, J. E. 1999. Thalassochytrium gracilariopsidis (Chytridiomycota), gen. et sp. nov., endosymbiotic in Gracilariopsis sp. (Rhodophyceae). Journal of Phycology 35:176–185. <a href="https://doi.org/10.1046/j.1529-8817.1999.3510176.x" target="_blank" rel="nofollow noopener">https://doi.org/10.1046/j.1529-8817.1999.3510176.x</a></p> <p>Oborník, M., Modrý, D., Lukeš, M., Černotíková-Stříbrná, E., Cihlář, J., Tesařová, M., ... & Lukeš, J. (2012). Morphology, ultrastructure and life cycle of Vitrella brassicaformis n. sp., n. gen., a novel chromerid from the Great Barrier Reef. Protist, 163(2), 306-323. <a href="http://doi.org/10.1016/j.protis.2011.09.001" target="_blank" rel="nofollow noopener">http://doi.org/10.1016/j.protis.2011.09.001</a></p> <p>Okamura, T. and Kondo, R., 2015. Suigetsumonas clinomigrationis gen. et sp. nov., a novel facultative anaerobic nanoflagellate isolated from the meromictic Lake Suigetsu, Japan. Protist, 166(4), pp.409-421. <a href="https://doi.org/0.1016/j.protis.2015.06.003" target="_blank" rel="nofollow noopener">https://doi.org/0.1016/j.protis.2015.06.003</a></p> <p>Olive, L. S. 1980. Caulochytrium protostelioides sp. nov., a New Chytrid with Aerial Sporangia. American Journal of Botany 67(4):568-574. <a href="https://doi.org/10.2307/2442298" target="_blank" rel="nofollow noopener">https://doi.org/10.2307/2442298</a></p> <p>Pánek T., Simpson A.G.B., Brown M.W., Dexter Dyer B. (2016) Heterolobosea. In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham. <a href="https://doi.org/10.1007/978-3-319-32669-6_10-1" target="_blank" rel="nofollow noopener">https://doi.org/10.1007/978-3-319-32669-6_10-1</a></p> <p>Pánek, T., Ptáčková, E., Čepička, I., 2014. Survey on diversity of marine/saline anaerobic Heterolobosea (Excavata: Discoba) with description of seven new species. International Journal of Systematic and Evolutionary Microbiology 64:2280–2304. <a href="https://doi.org/10.1099/ijs.0.063487-0" target="_blank" rel="nofollow noopener">https://doi.org/10.1099/ijs.0.063487-0</a></p> <p>Pánek, T., Simpson, A. G. B., Hampl, V., & Čepička, I. (2014). Creneis carolina gen. et sp. nov. (Heterolobosea), a novel marine anaerobic protist with strikingly derived morphology and life cycle. Protist 165:542–567. <a href="https://doi.org/10.1016/j.protis.2014.05.005" target="_blank" rel="nofollow noopener">https://doi.org/10.1016/j.protis.2014.05.005</a></p> <p>Parkinson, P., 2002. Ontogeny v. Phylogeny: the strange case of the silicoflagellates. Constancea, 83(18), pp.1-42.</p> <p>Paul, M. 2012. Acanthocorbis mongolica nov. spec.: Description of the first freshwater loricate choanoflagellate (Acanthoecida) from a Mongolian lake. European Journal of Protistology, 48, 1–8. <a href="https://doi.org/10.1016/j.ejop.2011.07.001" target="_blank" rel="nofollow noopener">https://doi.org/10.1016/j.ejop.2011.07.001</a></p> <p>Peters, M.C., Andersen, R.A., 1993. The fine structure and scale formation of Chrysolepidomonas dendrolepidota gen. et sp. nov. (Chrysolepidomonadaceae fam. nov., Chrysophyceae). J. Phycol. 29, 469–475. <a href="https://doi.org/10.1111/j.1529-8817.1993.tb00148.x" target="_blank" rel="nofollow noopener">https://doi.org/10.1111/j.1529-8817.1993.tb00148.x</a></p> <p>Powell M.J. (2016) Blastocladiomycota. In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham. <a href="https://doi.org/10.1007/978-3-319-32669-6_17-1" target="_blank" rel="nofollow noopener">https://doi.org/10.1007/978-3-319-32669-6_17-1</a></p> <p>Powell M.J. 1993. Looking at Mycology with a Janus Face: A Glimpse at Chytridiomycetes Active in the Environment. Mycologia 85:1-20. <a href="https://doi.org/10.1080/00275514.1993.12026239" target="_blank" rel="nofollow noopener">https://doi.org/10.1080/00275514.1993.12026239</a></p> <p>Price D.C., Steiner J.M., Yoon H.S., Bhattacharya D., Löffelhardt W. (2016) Glaucophyta. In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham. <a href="https://doi.org/10.1007/978-3-319-32669-6_42-1" target="_blank" rel="nofollow noopener">https://doi.org/10.1007/978-3-319-32669-6_42-1</a></p> <p>Raghukumar, S. (1987). Occurrence of the Thraustochytrid, Corallochytrium limacisporum gen. et sp. nov. in the coral reef lagoons of the Lakshadweep Islands in the Arabian Sea. Bot. Mar. 30, 83–89. <a href="https://doi.org/10.1515/botm.1987.30.1.83" target="_blank" rel="nofollow noopener">https://doi.org/10.1515/botm.1987.30.1.83</a></p> <p>Redhead, S.A., 1977. The genus Neolecta (Neolectaceae fam. nov., Lecanorales, Ascomycetes) in Canada. Canadian Journal of Botany, 55(3), pp.301-306. <a href="https://doi.org/10.1139/b77-041" target="_blank" rel="nofollow noopener">https://doi.org/10.1139/b77-041</a></p> <p>Richter, D.J., Nitsche, F., 2016. Choanoflagellatea, in: Archibald, J.M., Simpson, A.G.B., Slamovits, C.H., Margulis, L., Melkonian, M., Chapman, D.J., Corliss, J.O. (Eds.), Handbook of the Protists. Springer International Publishing, Cham, pp. 1–19. <a href="https://doi.org/10.1007/978-3-319-32669-6_5-1" target="_blank" rel="nofollow noopener">https://doi.org/10.1007/978-3-319-32669-6_5-1</a></p> <p>Rindi, F., Lopez-Bautista, J.M., Sherwood, A.R. and Guiry, M.D., 2006. Morphology and phylogenetic position of Spongiochrysis hawaiiensis gen. et sp. nov., the first known terrestrial member of the order Cladophorales (Ulvophyceae, Chlorophyta). International Journal of Systematic and Evolutionary Microbiology, 56(4), pp.913-922. <a href="https://doi.org/10.1099/ijs.0.63977-0" target="_blank" rel="nofollow noopener">https://doi.org/10.1099/ijs.0.63977-0</a></p> <p>Sawyer, T. K. 1980. Marine Amebae from Clean and Stressed Bottom Sediments of the Atlantic Ocean Gulf of Mexico. J.Protozool. 27(1):13-32.</p> <p>Schnepf E. 1994. Light and electron microscopical observations in Rhynchopus coscinodiscivorus spec. nov., a colorless, phagotrophic euglenozoon with concealed flagella. Arch. Protistenk. 144:63–74. <a href="https://doi.org/10.1016/S0003-9365(11)80225-3">https://doi.org/10.1016/S0003-9365(11)80225-3</a></p> <p>Sebastian Hess. 2017. Hunting for agile prey: trophic specialisation in leptophryid amoebae (Vampyrellida, Rhizaria) revealed by two novel predators of planktonic algae, FEMS Microbiology Ecology 93(9):fix104. <a href="https://doi.org/10.1093/femsec/fix104" target="_blank" rel="nofollow noopener">https://doi.org/10.1093/femsec/fix104</a></p> <p>Shiratori, T., & Ishida, K.-I. (2016). Entamoeba marina n. sp.; a new species of Entamoeba isolated from tidal flat sediment of Iriomote Island, Okinawa, Japan. Journal of Eukaryotic Microbiology 63:280–286. <a href="https://doi.org/10.1111/jeu.12276" target="_blank" rel="nofollow noopener">https://doi.org/10.1111/jeu.12276</a></p> <p>Shubert, E. and Gärtner, G., 2015. Nonmotile Coccoid and Colonial Green Algae. Freshwater Algae of North America, pp.315-373. <a href="https://doi.org/10.1016/B978-0-12-385876-4.00007-4" target="_blank" rel="nofollow noopener">https://doi.org/10.1016/B978-0-12-385876-4.00007-4</a></p> <p>Siemensma F. J. (1991). Klasse Heliozoa Haeckel, 1866. - In F.C. Page & FJ. Siemensma (eds.). Nackte Rhizopoda und Heliozoea. Protozoenfauna 2, pp. 171-297. Gustav Fischer Verlag, Stuttgart.</p> <p>Simpson A.G.B. (2016) Jakobida. In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham. <a href="https://doi.org/10.1007/978-3-319-32669-6_6-1" target="_blank" rel="nofollow noopener">https://doi.org/10.1007/978-3-319-32669-6_6-1</a></p> <p>Simpson, A. G., & Patterson, D. J. (1996). Ultrastructure and identification of the predatory flagellate Colpodella pugnax Cienkowski (Apicomplexa) with a description of Colpodella turpis n. sp. and a review of the genus. Systematic Parasitology 33(3):187-198.</p> <p>Škaloud, P., Kalina, T., Nemjová, K., De Clerck, O. and Leliaert, F., 2013. Morphology and phylogenetic position of the freshwater green microalgae Chlorochytrium (Chlorophyceae) and Scotinosphaera (Scotinosphaerales, ord. nov., Ulvophyceae). Journal of Phycology, 49(1), pp.115-129. <a href="https://doi.org/10.1111/jpy.12021" target="_blank" rel="nofollow noopener">https://doi.org/10.1111/jpy.12021</a></p> <p>Stephenson S.L., Schnittler M. (2016) Myxomycetes. In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham. <a href="https://doi.org/10.1007/978-3-319-32669-6_44-1" target="_blank" rel="nofollow noopener">https://doi.org/10.1007/978-3-319-32669-6_44-1</a></p> <p>Takahashi Y, Yoshida M, Inouye I, Watanabe MM. 2014. Diplophrys mutabilis sp. nov., a new member of Labyrinthulomycetes from freshwater habitats. Protist 165(1):50-65. <a href="http://doi.org/10.1016/j.protis.2013.10.001" target="_blank" rel="nofollow noopener">http://doi.org/10.1016/j.protis.2013.10.001</a></p> <p>Takishita, K., Kakizoe, N., Yoshida, T., & Maruyama, T. 2010. Molecular evidence that phylogenetically diverged ciliates are active in microbial mats of deep‐sea cold‐seep sediment. Journal of Eukaryotic Microbiology 57(1):76-86. <a href="http://doi.org/10.1111/j.1550-7408.2009.00457.x" target="_blank" rel="nofollow noopener">http://doi.org/10.1111/j.1550-7408.2009.00457.x</a></p> <p>Tashyreva, D., Simpson, A., Prokopchuk, G., Škodová-Sveráková, I., Butenko, A., Hammond, M., George, E.E., Flegontova, O., Záhonová, K., Faktorová, D. and Yabuki, A., 2022. Diplonemids–A Review on “New “Flagellates on the Oceanic Block. Protist 173:125868. <a href="https://doi.org/10.1016/j.protis.2022.125868" target="_blank" rel="nofollow noopener">https://doi.org/10.1016/j.protis.2022.125868</a></p> <p>Temraleeva, A., Moskalenko, S., Mincheva, E., Bukin, Y. and Sinetova, M., 2018. Spongiosarcinopsis terrestris gen. et sp. nov.(Chlorophyta, Chlorophyceae): a new genus of green algae from gray forest soil, Russia. Phytotaxa, 376(6), pp.291-300. <a href="http://dx.doi.org/10.11646/phytotaxa.376.6.4" target="_blank" rel="nofollow noopener">http://dx.doi.org/10.11646/phytotaxa.376.6.4</a></p> <p>Tragin, M., Vaulot, D. Novel diversity within marine Mamiellophyceae (Chlorophyta) unveiled by metabarcoding. Sci Rep 9, 5190 (2019). <a href="https://doi.org/10.1038/s41598-019-41680-6" target="_blank" rel="nofollow noopener">https://doi.org/10.1038/s41598-019-41680-6</a></p> <p>Turchetti, B., Thomas Hall, S.R., Connell, L.B., Branda, E., Buzzini, P., Theelen, B., Müller, W.H. and Boekhout, T., 2011. Psychrophilic yeasts from Antarctica and European glaciers: description of Glaciozyma gen. nov., Glaciozyma martinii sp. nov. and Glaciozyma watsonii sp. nov. Extremophiles, 15(5), pp.573-586. <a href="https://doi.org/10.1007/s00792-011-0388-x" target="_blank" rel="nofollow noopener">https://doi.org/10.1007/s00792-011-0388-x</a></p> <p>Van Oye, P., 1956. On the Thecamoeban fauna of New Zealand with description of four new species. Hydrobiologia 8:16–37.</p> <p>Visnovsky, G. & P. M. Novis, 2012. Novel alpine algae from New Zealand: Chlorophyta. Phytotaxa 39, 1-30. <a href="https://doi.org/10.11646/phytotaxa.39.1.1" target="_blank" rel="nofollow noopener">https://doi.org/10.11646/phytotaxa.39.1.1</a></p> <p>von der Heyden, Sophie, Ema Chao & Thomas Cavalier-Smith (2004) Genetic diversity of goniomonads: an ancient divergence between marine and freshwater species. European Journal of Phycology 39(4):343-350. <a href="https://doi.org/10.1080/09670260400005567" target="_blank" rel="nofollow noopener">https://doi.org/10.1080/09670260400005567</a></p> <p>Voos, J. R. & L. S. Olive. 1968. A new chytrid with aerial sporangia. Myco/ogia 60:730-733. <a href="https://doi.org/10.1080/00275514.1968.12018631" target="_blank" rel="nofollow noopener">https://doi.org/10.1080/00275514.1968.12018631</a></p> <p>Votýpka J., Modrý D., Oborník M., Šlapeta J., Lukeš J. (2016) Apicomplexa. In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham. <a href="https://doi.org/10.1007/978-3-319-32669-6_20-1" target="_blank" rel="nofollow noopener">https://doi.org/10.1007/978-3-319-32669-6_20-1</a></p> <p>Walker G., Zadrobílková E., Čepička I. (2017) Archamoebae. In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham. <a href="https://doi.org/10.1007/978-3-319-32669-6_11-1" target="_blank" rel="nofollow noopener">https://doi.org/10.1007/978-3-319-32669-6_11-1</a></p> <p>Watanabe, S., Fučíková, K., Lewis, L.A. and Lewis, P.O., 2016. Hiding in plain sight: Koshicola spirodelophila gen. et sp. nov.(Chaetopeltidales, Chlorophyceae), a novel green alga associated with the aquatic angiosperm Spirodela polyrhiza. American Journal of Botany, 103(5), pp.865-875. <a href="https://doi.org/10.3732/ajb.1500481" target="_blank" rel="nofollow noopener">https://doi.org/10.3732/ajb.1500481</a></p> <p>Wehr, J., 2015. Brown Algae, in: Freshwater Algae of North America: Ecology and Classification. pp. 851–871. <a href="https://doi.org/10.1016/B978-0-12-385876-4.00019-0" target="_blank" rel="nofollow noopener">https://doi.org/10.1016/B978-0-12-385876-4.00019-0</a></p> <p>Wehr, J., Sheath, R., Kociolek, J.P. (Eds.), 2015. Freshwater Algae of North America - 2nd Edition. Academic Press.</p> <p>Wetherbee, R., Bringloe, T.T., Costa, J.F., van de Meene, A., Andersen, R.A. and Verbruggen, H., 2021. New pelagophytes show a novel mode of algal colony development and reveal a perforated theca that may define the class. Journal of Phycology, 57(2), pp.396-411. <a href="https://doi.org/10.1111/jpy.13074-20-137" target="_blank" rel="nofollow noopener">https://doi.org/10.1111/jpy.13074-20-137</a></p> <p>Wetherbee, R., Jackson, C.J., Repetti, S.I., Clementson, L.A., Costa, J.F., van de Meene, A., Crawford, S. and Verbruggen, H., 2019. The golden paradox–a new heterokont lineage with chloroplasts surrounded by two membranes. Journal of phycology, 55(2), pp.257-278. <a href="https://doi.org/10.1111/jpy.12822" target="_blank" rel="nofollow noopener">https://doi.org/10.1111/jpy.12822</a></p> <p>Wolf, M., Buchheim, M., Hegewald, E., Krienitz, L. and Hepperle, D., 2002. Phylogenetic position of the Sphaeropleaceae (Chlorophyta). Plant Systematics and Evolution, 230(3), pp.161-171. <a href="https://doi.org/10.1007/s006060200002" target="_blank" rel="nofollow noopener">https://doi.org/10.1007/s006060200002</a></p> <p>Wujek DE, Pershon LE, Kadiri MO (2008) Description of new freshwater species of Thaumatomastix (Protista, Thaumatomonadida) from Nigeria, West Africa. Trop Freshwater Biol 17:13–20. <a href="https://doi.org/10.4314/tfb.v17i2.45810" target="_blank" rel="nofollow noopener">https://doi.org/10.4314/tfb.v17i2.45810</a></p> <p>Yoon H.S. et al. (2016) Rhodophyta. In: Archibald J. et al. (eds) Handbook of the Protists. Springer, Cham. <a href="https://doi.org/10.1007/978-3-319-32669-6_33-1" target="_blank" rel="nofollow noopener">https://doi.org/10.1007/978-3-319-32669-6_33-1</a></p> <p>Yubuki, N., Céza, V., Cepicka, I., Yabuki, A., Inagaki, Y., Nakayama, T., Inouye, I., & Leander, B. S. (2010). Cryptic diversity of free-living parabasalids, Pseudotrichomonas keilini and Lacusteria cypriaca n. g., n. sp., as inferred from small subunit rDNA sequences. Journal of Eukaryotic Microbiology 57:554–561. <a href="https://doi.org/10.1111/j.1550-7408.2010.00509.x" target="_blank" rel="nofollow noopener">https://doi.org/10.1111/j.1550-7408.2010.00509.x</a></p> <p>Yubuki, N., Zadrobílková, E., Čepička, I. (2016). Ultrastructure and molecular phylogeny of Iotanema spirale gen. nov. et sp. nov., a new lineage of endobiotic Fornicata with strikingly simplified ultrastructure. Journal of Eukaryotic Microbiology. <a href="https://doi.org/0.1111/jeu.12376" target="_blank" rel="nofollow noopener">https://doi.org/0.1111/jeu.12376</a>.</p>
Saproxylic Organisms
Trait data for saproxylic organisms textmined through Natural Language Processing of the Biodiversity Heritage Library corpus.
Supplementary data: Breeding wheat for organic farming: can the high grain protein gene Gpc-B1 help to tackle challenges in view of end-use quality?
<p>Agronomic and quality data of organic wheat (<em>Triticum aestivum</em>), mean comparisons and supplementary figures related to the publication "Breeding wheat for organic farming: can the high grain protein gene Gpc-B1 help to tackle challenges in view of end-use quality?" by Grausgruber et al. (2024) published in the Journal of Cereal Science.</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.