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492
datasets available to search
ShareScore release 0.9.0
Dataset results
492 results for “sequence modeling”
Nanopore PCR-free direct cDNA sequencing on a murine model of endotoxin-indcued acute kidney injury
GEO Series GSE244942. Mus musculus. 17 samples. Type: Expression profiling by high throughput sequencing.
RNA sequencing of the lung pre-metastatic niche in a syngeneic mouse model of rhabdomyosarcoma
GEO Series GSE166763. Mus musculus. 17 samples. Type: Expression profiling by high throughput sequencing.
Single cell RNA sequencing of CD45+ immune cells from tumor and tumor-adjacent mammary adipose tissue in a postmenopausal breast cancer model of lean, obese, and weight loss Trem2+/+ and Trem2-/- mice
GEO Series GSE278003. Mus musculus. 92 samples. Type: Expression profiling by high throughput sequencing.
RNA-sequencing reveals novel molecular mechanisms of endometriosis lesion development in a mouse model
GEO Series GSE255418. Mus musculus. 36 samples. Type: Expression profiling by high throughput sequencing.
A model system for assessing the ability of tag sequencing to detect genes specific for malignant B-cells
GEO Series GSE40310. Homo sapiens. 8 samples. Type: Expression profiling by high throughput sequencing.
RNA sequencing of transgenic TNNT2 variant models
GEO Series GSE145042. Homo sapiens. 9 samples. Type: Expression profiling by high throughput sequencing.
Single-cell RNA sequencing reveals the link between axonal regeneration and neuropathic pain by modified analysis of a novel peripheral nerve injury rat model
GEO Series GSE198608. Rattus norvegicus. 24 samples. Type: Expression profiling by high throughput sequencing.
A high resolution sequencing and modeling identifies distinct dynamic RNA regulatory strategies
GEO Series GSE56977. Mus musculus; Danio rerio. 27 samples. Type: Expression profiling by high throughput sequencing.
Evaluation of TRAP-sequencing technology with a versatile conditional mouse model
GEO Series GSE51619. Mus musculus. 21 samples. Type: Expression profiling by high throughput sequencing.
Single-cell RNA-sequencing of control aortic isografts of mouse models
GEO Series GSE149452. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing.
Cortical single-cell RNA sequencing of the microglia specific TREM2 inducible mouse models in the early stage of amyloid deposition
GEO Series GSE161224. Mus musculus. 24 samples. Type: Expression profiling by high throughput sequencing.
Symbiotic Transcriptome profiling of candidate genes in model legume Arachis hypogaea using Next Generation Sequencing Technology (NGS)
GEO Series GSE98997. Arachis hypogaea. 18 samples. Type: Expression profiling by high throughput sequencing.
RNA-Sequencing from ventral mid brain and striatum of paraquat, pyridaben and paraquat+maneb mice models of Parkinson's disease.
GEO Series GSE36232. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing.
RNA and miRNA sequencing of an IGF1R transgenic mouse model of lung cancer
GEO Series GSE109629. Mus musculus. 16 samples. Type: Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing.
Deep learning sequence-based ab initio prediction of variant effects on expression and disease risk (sequence model release)
<p>(This is the updated version that has been converted a standard pytorch model format)</p> <p>This is the deep learning sequence model used in </p> <p>Jian Zhou, Chandra L. Theesfeld, Kevin Yao, Kathleen M. Chen, Aaron K. Wong, and Olga G. Troyanskaya, Deep learning sequence-based ab initio prediction of variant effects on expression and disease risk, Nature Genetics, 2018.</p> <p>Note the full software is available from https://github.com/FunctionLab/ExPecto and this release is created for the convenience of use and under the same non-commercial license. The model weights can be loaded with pytorch load_state_dict function (for an example please find <a href="https://github.com/FunctionLab/ExPecto/blob/master/chromatin.py">https://github.com/FunctionLab/ExPecto/blob/master/chromatin.py</a>). We also provide a web server for browsing mutations with strong predicted effects at https://hb.flatironinstitute.org/expecto/, which are currently limited to mutations within 1kb to TSS or are 1000 Genomes variants.</p> <p>Trivia: we code-named our models with whale names. This model has an unofficial codename DeepSEA "Beluga".</p>
Supplementary materials for the paper "Towards a self-consistent model of the convective core boundary in upper-main-sequence stars"
<p>Supplementary materials for the paper "Towards a self-consistent model of the convective core boundary in upper-main-sequence stars" (Andrassy et al. 2023). The zip files contain the two MESA models used in the paper (one without and one with convective penetration). Files needed to re-compute the models are also included. They work with MESA version 15140.</p>
PPIO-004 Clinical Application of Efficacy Prediction Model Based on Epigenomics Sequencing Technology in Neoadjuvant Immunotherapy for Esophageal Cancer
ClinicalTrials.gov study NCT05880082. IPD Sharing: NO. Countries: 1. Publications: 0.
Single-cell RNA sequencing of liver parenchymal cells from murine model of endotoxemia
GEO Series GSE186554. Mus musculus. 3 samples. Type: Expression profiling by high throughput sequencing.
Analysis of HIV-1 transcriptome in different cell models with nanopore sequencing [HIVTCD4_A2018]
GEO Series GSE138423. Homo sapiens. 3 samples. Type: Expression profiling by high throughput sequencing.
Single-cell sequencing reveals cancer cell heterogeneity in a murine breast cancer lymph node metastasis model
GEO Series GSE168181. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.