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Figure 9 from: He J, Li D-W, Cui W-L, Huang L (2024) Seven new species of Alternaria (Pleosporales, Pleosporaceae) associated with Chinese fir, based on morphological and molecular evidence. MycoKeys 101: 1-44. https://doi.org/10.3897/mycokeys.101.115370
Figure 9 Alternaria xinyangensis (ZLS1) A colony on PCA after 6 days at 25 °C in the dark B, C sporulation patterns D conidiophores and conidiogenouse cells E conidium. Scale bars: 50 μm (B, C);10 μm (D, E).
Figure 2 from: He J, Li D-W, Cui W-L, Huang L (2024) Seven new species of Alternaria (Pleosporales, Pleosporaceae) associated with Chinese fir, based on morphological and molecular evidence. MycoKeys 101: 1-44. https://doi.org/10.3897/mycokeys.101.115370
Figure 2 Splitgraphs showing the results of the pairwise homoplasy index (PHI) test of newly described taxa and closely-related species using both LogDet transformation and splits decomposition A the PHI of Alternaria xinyangensis sp. nov. and A. dongshanqiaoensis sp. nov. with their phylogenetically related isolates or species B the PHI of A. shandongensis sp. nov., A. kunyuensis sp. nov., A. hunanensis sp. nov. and A. longqiaoensis sp. nov. with their phylogenetically related isolates or species C the PHI of A. cunninghamiicola sp. nov. with their phylogenetically-related isolates or species. PHI test value (Φw) < 0.05 indicate significant recombination within a dataset. * indicates strains of this study. T indicates the ex-type strains, ET indicates the ex-epitype strains, HT indicates the ex-holotype strains.
Figure 1 from: He J, Li D-W, Cui W-L, Huang L (2024) Seven new species of Alternaria (Pleosporales, Pleosporaceae) associated with Chinese fir, based on morphological and molecular evidence. MycoKeys 101: 1-44. https://doi.org/10.3897/mycokeys.101.115370
Figure 1 Phylogenetic relationships of 116 isolates of the Alternaria species complex with related taxa with concatenated sequences of the SSU, LSU, ITS, GAPDH, RPB2, TEF1, Alt a1, endoPG and OPA10-2 loci using Bayesian inference (BI) and Maximum-likelihood (ML) methods. Bootstrap support values from ML ≥ 70% and BI posterior values ≥ 0.9 are shown at nodes (ML/BI). Alternaria alternantheraeCBS 124392 was the outgroup. * and red font indicates strains of this study. T indicates the ex-type strains, ET indicates the ex-epitype strains, HT indicates the ex-holotype strains.
Supplementary material 1 from: He J, Li D-W, Cui W-L, Huang L (2024) Seven new species of Alternaria (Pleosporales, Pleosporaceae) associated with Chinese fir, based on morphological and molecular evidence. MycoKeys 101: 1-44. https://doi.org/10.3897/mycokeys.101.115370
Supplementary information
Figure 4 from: He J, Li D-W, Cui W-L, Huang L (2024) Seven new species of Alternaria (Pleosporales, Pleosporaceae) associated with Chinese fir, based on morphological and molecular evidence. MycoKeys 101: 1-44. https://doi.org/10.3897/mycokeys.101.115370
Figure 4 Alternaria dongshanqiaoensis (DSQ2-2) A colony on PCA after 6 days at 25 °C in the dark B, C sporulation patterns D conidiophore and conidiogenous cell E conidia. Scale bars: 50 μm (B, C); 10 μm (D, E).
Figure 8 from: He J, Li D-W, Cui W-L, Huang L (2024) Seven new species of Alternaria (Pleosporales, Pleosporaceae) associated with Chinese fir, based on morphological and molecular evidence. MycoKeys 101: 1-44. https://doi.org/10.3897/mycokeys.101.115370
Figure 8 Alternaria shandongensis (SDHG12) A colony on PCA after 6 days at 25 °C in the dark B–D sporulation patterns E, F conidiophores and conidiogenous cells G conidia. Scale bars: 50 μm (B, C); 10 μm (D–G).
Figure 6 from: He J, Li D-W, Cui W-L, Huang L (2024) Seven new species of Alternaria (Pleosporales, Pleosporaceae) associated with Chinese fir, based on morphological and molecular evidence. MycoKeys 101: 1-44. https://doi.org/10.3897/mycokeys.101.115370
Figure 6 Alternaria kunyuensis (XXG21) A colony on PCA after 6 days at 25 °C in the dark B, C sporulation patterns D conidiophores bear conidiogenous cells E secondary conidiophores, conidiogenous cells and conidia F conidium. Scale bars: 50 μm (B); 10 μm (C–F).
Figure 10 from: He J, Li D-W, Cui W-L, Huang L (2024) Seven new species of Alternaria (Pleosporales, Pleosporaceae) associated with Chinese fir, based on morphological and molecular evidence. MycoKeys 101: 1-44. https://doi.org/10.3897/mycokeys.101.115370
Figure 10 Symptoms on detached Chinese fir leaves A inoculated with isolates: A. xinyangensis (ZLS1), A. kunyuensis (XXG21), A. cunninghamiicola (DSQ3-2), A. dongshanqiaoensis (DSQ2-2), A. longqiaoensis (HN43-14), A. shandongensis (SDHG12) and A. hunanensis (HN43-10-2) B lesion length on detached Chinese fir leaves inoculated with A. xinyangensis (ZLS1), A. kunyuensis (XXG21), A. cunninghamiicola (DSQ3-2), A. dongshanqiaoensis (DSQ2-2), A. longqiaoensis (HN43-14), A. shandongensis (SDHG12) and A. hunanensis (HN43-10-2). Error bars represent standard error and different letters indicate significant difference, based on LSD's range test at P < 0.05 (n = 12). Scale bar: 10 mm (A).
Figure 8 from: He J, Li D-W, Cui W-L, Zhu L-H, Huang L (2024) Morphological and phylogenetic analyses reveal three new species of Fusarium (Hypocreales, Nectriaceae) associated with leaf blight on Cunninghamia lanceolata in China. MycoKeys 101: 45-80. https://doi.org/10.3897/mycokeys.101.113128
Figure 8 Fusarium hunanense (HN33-8-2) A–D colonies on PDA, SNA, OMA, and CMA, respectively, after 5 days at 24 °C in the dark E sporodochia formed on PDAF–K aerial conidiophores, phialides, and conidia L–N sporodochial conidiophores, phialides, and conidia O, P macroconidia (3–6-septate) Q chlamydospore. Scale bars: 1,000 μm (E); 50 μm (F–H); 10 μm (I–Q).
Figure 9 from: He J, Li D-W, Cui W-L, Zhu L-H, Huang L (2024) Morphological and phylogenetic analyses reveal three new species of Fusarium (Hypocreales, Nectriaceae) associated with leaf blight on Cunninghamia lanceolata in China. MycoKeys 101: 45-80. https://doi.org/10.3897/mycokeys.101.113128
Figure 9 Symptoms on detached Cunninghamia lanceolata leaves (A) and shoots of tissue-culture seedlings of C. lanceolata (B) inoculated with isolates: Fusarium fujianense (LC14), F. fujikuroi (HN43-17-1), F. guizhouense (GZ7-20-1), F. concentricum (SJ1-10), and F. hunanense (HN33-8-2). Scale bar: 10 mm. C, Lesion length on detached C. lanceolata leaves inoculated with F. fujianense (LC14), F. fujikuroi (HN43-17-1), F. guizhouense (GZ7-20-1), F. concentricum (SJ1-10), and F. hunanense (HN33-8-2). Error bars represent standard deviation, and different letters indicate significant difference based on LSD's range test at P < 0.05 (n = 8).
Figure 6 from: He J, Li D-W, Cui W-L, Zhu L-H, Huang L (2024) Morphological and phylogenetic analyses reveal three new species of Fusarium (Hypocreales, Nectriaceae) associated with leaf blight on Cunninghamia lanceolata in China. MycoKeys 101: 45-80. https://doi.org/10.3897/mycokeys.101.113128
Figure 6 Fusarium fujianense (LC14) A–D colonies on PDA, SNA, OMA, and CMA, respectively, after 5 days at 24 °C in the dark E, F sporodochia formed on PDAG, H aerial conidiophores, phialides, and microconidia I–L sporodochial conidiophores, phialides, and macroconidia M mesoconidium (1-septate) and macroconidia (4–6-septate). Scale bars: 200 μm (E, F); 10 μm (G–M).
Figure 7 from: He J, Li D-W, Cui W-L, Zhu L-H, Huang L (2024) Morphological and phylogenetic analyses reveal three new species of Fusarium (Hypocreales, Nectriaceae) associated with leaf blight on Cunninghamia lanceolata in China. MycoKeys 101: 45-80. https://doi.org/10.3897/mycokeys.101.113128
Figure 7 Fusarium guizhouense (GZ7-20-1) A–D colonies on PDA, SNA, OMA, and CMA, respectively, after 5 days at 24 °C in the dark E sporodochia formed on the surface of carnation leaves F–J sporodochial conidiophores, phialides, and macroconidia K macroconidia (4–6-septate). Scale bars: 200 μm (E); 10 μm (F, G, K); 50 μm (H–J).
Figure 3 from: He J, Li D-W, Cui W-L, Zhu L-H, Huang L (2024) Morphological and phylogenetic analyses reveal three new species of Fusarium (Hypocreales, Nectriaceae) associated with leaf blight on Cunninghamia lanceolata in China. MycoKeys 101: 45-80. https://doi.org/10.3897/mycokeys.101.113128
Figure 3 Splitgraphs showing the results of the pairwise homoplasy index (PHI) test of three newly described taxa and closely related species using both LogDet transformation and splits decomposition A the PHI of Fusarium fujianense sp. nov. with their phylogenetically related isolates or species B the PHI of F. hunanense sp. nov. with their phylogenetically related isolates or species C the PHI of F. guizhouense sp. nov. with their phylogenetically related isolates or species. PHI test value (Φw) < 0.05 indicate significant recombination within a dataset. * indicates isolates of this study. T indicates ex-types. HT indicates ex-holotypes.
Figure 5 from: He J, Li D-W, Cui W-L, Zhu L-H, Huang L (2024) Morphological and phylogenetic analyses reveal three new species of Fusarium (Hypocreales, Nectriaceae) associated with leaf blight on Cunninghamia lanceolata in China. MycoKeys 101: 45-80. https://doi.org/10.3897/mycokeys.101.113128
Figure 5 Phylogenetic relationships of 30 isolates of the Fusarium sambucinum species complex with related taxa with concatenated sequences of the TEF-1α, RPB2, and RPB1 loci using Bayesian inference (BI) and maximum likelihood (ML) methods. Bootstrap support values from ML ≥ 70% and BI posterior values ≥ 0.9 are shown at nodes (ML/BI). F. concentricum CBS 450.97T was the outgroup. * indicates strains of this study. T indicates the ex-type strains. HT indicates ex-holotypes.
Figure 4 from: He J, Li D-W, Cui W-L, Zhu L-H, Huang L (2024) Morphological and phylogenetic analyses reveal three new species of Fusarium (Hypocreales, Nectriaceae) associated with leaf blight on Cunninghamia lanceolata in China. MycoKeys 101: 45-80. https://doi.org/10.3897/mycokeys.101.113128
Figure 4 Phylogenetic relationships of 41 isolates of the Fusarium solani species complex with related taxa with concatenated sequences of the TEF-1α, RPB2, and RPB1 loci using Bayesian inference (BI) and maximum likelihood (ML) methods. Bootstrap support values from ML ≥ 70% and BI posterior values ≥ 0.9 are shown at nodes (ML/BI). Fusarium staphyleae NRRL 22316 and F. cicatricum CBS 125552 were the outgroup. * indicates strains of this study. T indicates the ex-type strains. ET indicates ex-epitypes.
Figure 1 from: He J, Li D-W, Cui W-L, Zhu L-H, Huang L (2024) Morphological and phylogenetic analyses reveal three new species of Fusarium (Hypocreales, Nectriaceae) associated with leaf blight on Cunninghamia lanceolata in China. MycoKeys 101: 45-80. https://doi.org/10.3897/mycokeys.101.113128
Figure 1 Phylogenetic relationships of 37 isolates of the Fusarium fujikuroi species complex with related taxa derived from concatenated sequences of the TEF-1α, RPB2, and RPB1 genes/region using Bayesian inference (BI) and maximum likelihood (ML) methods. Bootstrap support values from ML ≥ 70% and BI posterior values ≥ 0.9 are shown at nodes (ML/BI). Fusarium zealandicum CBS 111.93T was the outgroup. * indicates strains of this study. T indicates ex-types or ex-epitypes. LT: Ex-lectotype, NT: Ex-neotype, HT: Ex-holotype.
Figure 2 from: He J, Li D-W, Cui W-L, Zhu L-H, Huang L (2024) Morphological and phylogenetic analyses reveal three new species of Fusarium (Hypocreales, Nectriaceae) associated with leaf blight on Cunninghamia lanceolata in China. MycoKeys 101: 45-80. https://doi.org/10.3897/mycokeys.101.113128
Figure 2 Phylogenetic relationships of 16 isolates of the Fusarium lateritium species complex with related taxa with concatenated sequences of the TEF-1α, RPB2, and RPB1 loci using Bayesian inference (BI) and maximum likelihood (ML) methods. Bootstrap support values from ML ≥ 70% and BI posterior values ≥ 0.9 are shown at nodes (ML/BI). Fusarium sublunatum CBS 189.34T was the outgroup. * indicates strains of this study. T indicates the ex-type strains. LT: Ex-lectotype, NT: Ex-neotype, HT: Ex-holotype.
Supplementary material 1 from: He J, Li D-W, Cui W-L, Zhu L-H, Huang L (2024) Morphological and phylogenetic analyses reveal three new species of Fusarium (Hypocreales, Nectriaceae) associated with leaf blight on Cunninghamia lanceolata in China. MycoKeys 101: 45-80. https://doi.org/10.3897/mycokeys.101.113128
Supplementary data
Fig. 4 in Phyllocnistis hemera sp. nov. (Lepidoptera: Gracillariidae): a new species of leaf-miner associated with Daphnopsis fasciculata (Thymelaeaceae) in the Atlantic Forest
Fig. 4. Scanning electron micrographs of P. hemera sap-feeding larva: (A–D) head under dorsal, ventral, anterior and lateral views (arrow indicates stemma); (E) labrum, dorsal; (F) labium, ventral (arrow indicates spinneret aperture); (G) antenna, ventral; (H) stemma in detail (indicated by arrow in D), lateral; (I) prothoracic spiracle, dorsal; (J) segment A7, ventral; (K) segments A8-10, ventral; (L) detail of latero-ventral lobe indicated by arrow in K, ventral; (M, N) latero-dorsal lobe, highlighted by the red rectangle in K, lateral and dorsal; (O) last abdominal segment, ventral. Scale bars: 200 (A, B, D, K), 70 (C), 100 (E, F, O), 30 (G), 20 (H), 10 (I), 250 (J), 25 (L), 50 (M), 40 µm (N).
Fig. 7 in Phyllocnistis hemera sp. nov. (Lepidoptera: Gracillariidae): a new species of leaf-miner associated with Daphnopsis fasciculata (Thymelaeaceae) in the Atlantic Forest
Fig. 7. Natural history of P. hemera: (A) Host plant, Daphnopsis fasciculata at the type locality; (B) seedling of D. fasciculata with several mines; (C) leaf with a single P. hemera mine on adaxial surface (closed and open arrows indicate the beginning and final portions of the mine); (D) sap-feeding larva, latero-dorsal view; (E) spinning larva, latero-dorsal; (F) pupal cocoon, dorsal; (G) pupa, dorsal; (H) pupal exuvium protruded from cocoon after adult emergence. Scale bars: 40 (B), 3 (C), 1 (D, E, G, H), 0.3 mm (F).
ScienceDex guides
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.