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FIG. 16. A left mandible fragment with m1-3 in New ctenodactyloid rodents from the Erlian Basin, Nei Mongol, China, and the phylogenetic relationships of Eocene Asian ctenodactyloids
FIG. 16. A left mandible fragment with m1-3 of Advenimus hupeiensis (V16507). A, occlusal view; B, labial view.
Figure 5 in A new species of Halisaurus from the Late Cretaceous phosphates of Morocco, and the phylogenetical relationships of the Halisaurinae (Squamata: Mosasauridae)
Figure 5. Halisaurus arambourgi sp. nov. A, MNHN PMC 15, referred specimen, disarticulated cranium, Late Cretaceous (Maastrichtian), Oulad Abdoun Basin, Morocco; B, OCP DEK/GE 100, referred specimen, incomplete disarticulated skeleton, Late Cretaceous (Maastrichtian), Oulad Abdoun Basin, Morocco, interpretative drawings. Abbreviations as in Fig. 3. Scale bars = 10 cm.
FIG. 10 in Karyotype comparison of five African Vespertilionini species with comments on phylogenetic relationships and proposal of a new subtribe
FIG. 10. Photographic images of the N. happoldorum baculum, (A) lateral and (B) dorsal view
Figure 3 from: Sánchez D, Vázquez-Benítez B, Vázquez-Sánchez M, Aquino D, Arias S (2022) Phylogenetic relationships in Coryphantha and implications on Pelecyphora and Escobaria (Cacteae, Cactoideae, Cactaceae). PhytoKeys 188: 115-165. https://doi.org/10.3897/phytokeys.188.75739
Figure 3 Representative species and morphology of Coryphantha and EscobariaAEscobaria dasyacantha bearing red fruits (S. Arias 2090, MEXU) B flower of Escobaria emskoetteriana (Quehl) Borg with fimbriate outer tepals (D. Aquino 322, MEXU) CCoryphantha macromeris bearing flowers with fimbriate outer tepals (S. Arias 1788, MEXU) D close-up of the furrow on the tubercles (arrow) in Pelecyphora aselliformis (H. Sánchez-Mejorada 3616, MEXU) E green fruits (top) and flat multicellular sculpture of the lateral side of the seed (bottom) in Coryphantha calipensis (B. Vázquez 2555, MEXU) FCoryphantha maiz-tablasensis (D. Aquino 400, MEXU) GCoryphantha cornifera (SA 2212, MEXU) HCoryphantha durangensis (B. Vázquez 2625, MEXU) ICoryphantha poselgeriana (S. Arias 2109, MEXU) JCoryphantha kracikii (B. Vázquez 2618, MEXU) K glands at the axil (arrow) in Coryphantha ottonis (D. Sánchez s.n., IBUG) LCoryphantha glanduligera (S. Arias 2129, MEXU).
Figure 2 from: Sánchez D, Vázquez-Benítez B, Vázquez-Sánchez M, Aquino D, Arias S (2022) Phylogenetic relationships in Coryphantha and implications on Pelecyphora and Escobaria (Cacteae, Cactoideae, Cactaceae). PhytoKeys 188: 115-165. https://doi.org/10.3897/phytokeys.188.75739
Figure 2 Phylogenetic relationships of Coryphantha and close related genera. Majority rule phylogram, from the BI analysis using cpDNA sequences, indels, and morphological partitions (combined analysis). Numbers in nodes indicate posterior probabilities. Labels indicate the main recovered clades and subclades.
Figure 1 in Another step towards understanding phylogenetic relationships in Asphondyliini: revisiting two hypotheses to Bruggmanniella s.l. (Diptera, Cecidomyiidae)
Figure 1 Most parsimonious tree under implied weight (k = 3) of the genus Bruggmanniella Tavares, 1909. Values in brackets show the relative Bremer support (in percentage). Purple clades symbolize the species distributed in Taiwan.Blue symbolizes the species distributed in Japan.Yellow clades represent the species with distribution in the Neotropics, mostly Brazil. Green clade represents the species with occurrence in the US.
Supplementary material 1 from: Meng H, Wang Y, Qiao G-X, Chen J (2024) Mitochondrial genome data provide insights into the phylogenetic relationships within Triplophysa dalaica (Kessler, 1876) (Cypriniformes, Nemacheilidae). ZooKeys 1197: 43-55. https://doi.org/10.3897/zookeys.1197.116342
Supplementary data
Figure 1 from: Meng H, Wang Y, Qiao G-X, Chen J (2024) Mitochondrial genome data provide insights into the phylogenetic relationships within Triplophysa dalaica (Kessler, 1876) (Cypriniformes, Nemacheilidae). ZooKeys 1197: 43-55. https://doi.org/10.3897/zookeys.1197.116342
Figure 1 Geographic distribution of the eight Triplophysa dalaica samples. Circles: samples sequenced in this research. Triangle: sample with mitochondrial genome available in NCBI. Squares: samples for which mitochondrial genome assembled using released HTS data from NCBI.
Figure 2 from: Meng H, Wang Y, Qiao G-X, Chen J (2024) Mitochondrial genome data provide insights into the phylogenetic relationships within Triplophysa dalaica (Kessler, 1876) (Cypriniformes, Nemacheilidae). ZooKeys 1197: 43-55. https://doi.org/10.3897/zookeys.1197.116342
Figure 2 A The majority rule consensus tree constructed using MrBayes based on the CDS of 13 mitochondrial PCGs (excluding stop codons) of eight Triplophysa dalaica individuals and outgroup species, totaling 11,427 bp. The topology of the tree closely resembles that constructed by RAxML. Posterior probabilities (from MrBayes) and bootstrap values (from RAxML) for branches are depicted as two different colored rectangles, one above the other B details of the clade containing the eight T. dalaica individuals in the phylogenetic tree. Numerical values on branches represent posterior probabilities and bootstrap values, respectively. The dashes represent values less than 50. The red dots indicate divergence time estimated by MCMC approach with 95% HPD.
Table 1 in Anatomy and phylogenetic relationships of Temnodontosaurus zetlandicus (Reptilia: Ichthyosauria)
<p><b>Table 1.</b> Measurements (anteroposterior length, diameter, dorsoventral height, mediolateral width) of <i>Temnodontosaurus zetlandicus</i> comb. nov. (holotype CAMSM J35176) and <i>Temnodontosaurus</i> cf. <i>zetlandicus</i> (MNHNL TU885)</p><table><tbody><tr><th>Measurements (in mm)</th><th>CAMSM J35176</th><th>MNHNL TU885</th></tr></tbody><tbody><tr><th>Length of the skull (estimation)</th><td>990</td><td>–</td></tr><tr><th>Length of the rostrum (estimation)</th><td>680</td><td>–</td></tr><tr><th>Length of the pre-naris rostrum (estimation)</th><td>544</td><td>–</td></tr><tr><th>Height of the left orbit</th><td>160</td><td>–</td></tr><tr><th>Length of the left orbit</th><td>195</td><td>–</td></tr><tr><th>Height of the right orbit</th><td>164</td><td>–</td></tr><tr><th>Length of the right orbit</th><td>201</td><td>–</td></tr><tr><th>Height of the left sclerotic ring</th><td>–</td><td>165</td></tr><tr><th>Length of the left sclerotic ring</th><td>–</td><td>159</td></tr><tr><th>Length of the left supratemporal fenestra</th><td>165</td><td>–</td></tr><tr><th>Length of the right supratemporal fenestra</th><td>~149</td><td>147</td></tr><tr><th>Length of the left naris</th><td>109</td><td>–</td></tr><tr><th>Length of the right naris</th><td>112</td><td>–</td></tr><tr><th>Length of the parietal foramen</th><td>30</td><td>28</td></tr><tr><th>Width of the parietal foramen</th><td>10</td><td>20</td></tr><tr><th>Length of the left postorbital region</th><td>106</td><td>89</td></tr><tr><th>Length of the right postorbital region</th><td>95</td><td>–</td></tr><tr><th>Length of the parietal</th><td>173</td><td>152</td></tr><tr><th>Length of the frontal</th><td>125</td><td>~120</td></tr><tr><th>Height of the basioccipital</th><td>–</td><td>102</td></tr><tr><th>Width of the basioccipital</th><td>90</td><td>103</td></tr><tr><th>Height of the basioccipital condyle</th><td>_</td><td>61</td></tr><tr><th>Width of the basioccipital condyle</th><td>66</td><td>78</td></tr></tbody></table>
Cohen and Schenk (2021) Data from: Investigating phylogenetic placement and species-level relationships in a recent radiation of Mentzelia section Bartonia (Loasaceae) from the Mojave Desert
<p>Understanding species level relationships is a central goal in systematic botany; however complexes of closely related and morphologically similar species often pose considerable challenges to that goal. The North American west is home to many notable genera that notoriously have difficult species complexes (e.g., <i>Astragalus</i>, <i>Eriogonum</i>, <i>Penstemon</i>). <i>Mentzelia </i>section <i>Bartonia </i>(Loasaceae)<i> </i>is a recently evolved and diverse clade that occurs across the North American west. Phylogenetic studies have resolved many relationships, but the relationships within a species complex of perennial, subshrub species that occurs in the Mojave Desert, Great Basin, and Colorado Plateau remains elusive. This arid-adapted clade, which is referred to as the Mojave clade, has significant conservation implications, due to three narrowly endemic species: <i>Mentzelia polita</i> and <i>Mentzelia tiehmii </i>are state listed, and <i>Mentzelia leucophylla</i> is federally listed. Species relationships within the Mojave clade are not fully understood. Populations of <i>Mentzelia oreophila </i>from California and Nevada, for example, are not monophyletic. We generated restriction site associated DNA sequence data (RADSeq) to address evolutionary relationships in the Mojave clade. Our results corroborated previous studies in continued recognition of <i>Mentzelia polita</i>, <i>Mentzelia leucophylla</i>, and<i> Mentzelia tiehmii</i>; however, <i>Mentzelia oreophila </i>was recovered in three clades that includes a California clade, a Nevada clade, and one with <i>Mentzelia puberula</i>. Incomplete lineage sorting and hybridization might have generated conflicting phylogenetic signal between <i>Mentzelia oreophila </i>and <i>Mentzelia puberula</i>. Increasing population level sampling will aid in species delimitation and further help to understand how gene flow and/or hybridization is influencing population level dynamics in the Mojave Desert.</p>
Figure 5 in Phylogenetic relationships among Acestrorhynchus species (Ostariophysi: Characiformes: Acestrorhynchidae)
Figure 5. Anterior region of neurocranium of Acestrorhynchus microlepis, MZUSP 34957, 123.1-mm standard length; left side, anterior to left. Arrow points to dorsolateral process of vomer.
Figure 1 in Phylogenetic relationships among Acestrorhynchus species (Ostariophysi: Characiformes: Acestrorhynchidae)
Figure 1. Anterior region of neurocranium of Acestrorhynchus pantaneiro, MZUSP 59893, 103.8-mm standard length; left side, anterior to left. Left arrow points to process of vomer that articulates with palatine. Right arrow points to dorsolateral process of vomer.
Figure 19 in Phylogenetic relationships among Acestrorhynchus species (Ostariophysi: Characiformes: Acestrorhynchidae)
Figure 19. Urohyal of Acestrorhynchus britskii, MZUSP 27892, 124.2-mm standard length; top, dorsal view; bottom, lateral view; anterior to left.
Figure 24 in Phylogenetic relationships among Acestrorhynchus species (Ostariophysi: Characiformes: Acestrorhynchidae)
Figure 24. Post-temporal of Acestrorhynchus pantaneiro, MZUSP 44368, 110.4-mm standard length, lateral view, anterior to left. Arrow points to branch of laterosensory canal segment of post-temporal.
Figure 4 from: Ivanova ES, Efeykin BD, Spiridonov SE (2021) The re-description of Synoecnema hirsutum Timm, 1959 (Synoecneminae, Ungellidae, Drilonematoidea) from a pheretimoid earthworm in Vietnam with the analysis of its phylogenetic relationships. ZooKeys 1076: 135-150. https://doi.org/10.3897/zookeys.1076.75932
Figure 4 Phylogenetic relationships of Synoecnema hirsutum inferred from Maximum Likelihood analysis of concatenated dataset of 12 mitochondrial protein-coding genes.
Figure 2 from: Ivanova ES, Efeykin BD, Spiridonov SE (2021) The re-description of Synoecnema hirsutum Timm, 1959 (Synoecneminae, Ungellidae, Drilonematoidea) from a pheretimoid earthworm in Vietnam with the analysis of its phylogenetic relationships. ZooKeys 1076: 135-150. https://doi.org/10.3897/zookeys.1076.75932
Figure 2 Synoecnema hirsutum Timm, 1959. SEM images. Male A entire worm B-C cephalic hooks D-F patches of cuticle covered with setae (D-E at mid-body F at anterior) G-H caudal organ at posterior I surface of caudal organ. Scales in µm.
Figure 1 from: Ivanova ES, Efeykin BD, Spiridonov SE (2021) The re-description of Synoecnema hirsutum Timm, 1959 (Synoecneminae, Ungellidae, Drilonematoidea) from a pheretimoid earthworm in Vietnam with the analysis of its phylogenetic relationships. ZooKeys 1076: 135-150. https://doi.org/10.3897/zookeys.1076.75932
Figure 1 Synoecnema hirsutum Timm, 1959 A entire male B entire female C pharynx region of female D-E head region of females F egg. All in lateral position. Scales in µm.
Data from: Taxonomy in the phylogenomic era: Species boundaries and phylogenetic relationships among North American ants of the Crematogaster scutellaris group
<p>We investigate the species-level taxonomy and evolutionary history of Nearctic ants in the <i>Crematogaster scutellaris</i> group (Hymenoptera: Formicidae), drawing on evidence from morphology and UCE (ultraconserved element) phylogenomics. The New World species in this group form a well supported clade that originated in the late Miocene (~7.3 Ma) and subsequently diverged into three major lineages: the <i>coarctata</i> clade (southwest Nearctic), the <i>opaca</i> clade (southwest Nearctic and northern Neotropics), and the <i>lineolata</i> clade (eastern Nearctic and Caribbean, with four isolated Southwest endemics). We hypothesize trans-Beringian dispersal into the New World, west-to-east movement within North America, and restriction of mesophilic species to the east with increasing aridification of the west. The ancestral nesting behavior of these ants is inferred to be ground-dwelling, and this is still the predominant condition in the arid west, whereas most species in eastern United States are arboreal. We resurrect from synonymy nine species, and describe three new species: <i>C. detecta</i> <b>sp. nov.</b> (from Nevada)<i>, C. parapilosa</i> <b>sp. nov.</b> (Florida), and <i>C. vetusta</i> <b>sp. nov.</b> (Arizona). We provide a worker-based key to the thirty-four species of <i>Crematogaster</i> occurring in America north of Mexico, but emphasize that there are still ongoing taxonomic issues that need to be resolved.</p>
Figure 1 from: Sánchez D, Vázquez-Benítez B, Vázquez-Sánchez M, Aquino D, Arias S (2022) Phylogenetic relationships in Coryphantha and implications on Pelecyphora and Escobaria (Cacteae, Cactoideae, Cactaceae). PhytoKeys 188: 115-165. https://doi.org/10.3897/phytokeys.188.75739
Figure 1 Phylogenetic relationships of Coryphantha and close related genera. Majority rule phylogram, from the BI analysis using cpDNA sequences and indels partitions (molecular analysis). Numbers in nodes indicate posterior probabilities. Labels indicate the main recovered clades and subclades.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
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The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
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OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.