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FIGURE 39 in Contribution to the knowledge of Chinese Gryllacrididae (Orthoptera) V: Further study on the Chinese Capnogryllacris and comment on the phylogenetic relationships of the Gryllacrididae
FIGURE 39. Number of jMOTU defined with base differences.
FIGURE 38. The secondary structures for 22 in Contribution to the knowledge of Chinese Gryllacrididae (Orthoptera) V: Further study on the Chinese Capnogryllacris and comment on the phylogenetic relationships of the Gryllacrididae
FIGURE 38. The secondary structures for 22 tRNA genes of the Capnogryllacris spinosa.
FIGURE 37. The secondary structures for 22 in Contribution to the knowledge of Chinese Gryllacrididae (Orthoptera) V: Further study on the Chinese Capnogryllacris and comment on the phylogenetic relationships of the Gryllacrididae
FIGURE 37. The secondary structures for 22 tRNA genes of the Capnogryllacris rufonotata.
FIGURE 31 in Contribution to the knowledge of Chinese Gryllacrididae (Orthoptera) V: Further study on the Chinese Capnogryllacris and comment on the phylogenetic relationships of the Gryllacrididae
FIGURE 31. The amino acid usage of the PCGs of new obtained mitogenomes.
FIGURE 13 in The taxonomic identity of the monocle bream Scolopsis vosmeri species complex (Perciformes: Nemipteridae), with comments on molecular phylogenetic relationships within the genus Scolopsis
FIGURE 13. Distribution map. *Scolopsis vosmeri; Scolopsis curite; ̚Scolopsis japonica.
FIGURE 4 in The taxonomic identity of the monocle bream Scolopsis vosmeri species complex (Perciformes: Nemipteridae), with comments on molecular phylogenetic relationships within the genus Scolopsis
FIGURE 4. Scolopsis japonica, live individuals, Raja Ampat, Indonesia. Photos by G.R. Allen.
Supplementary material 1 from: Costa WJEM, Mattos JLO, Sampaio WMS, Giongo P, de Almeida FB, Katz AM (2022) Phylogenetic relationships of a new catfish of the genus Trichomycterus (Siluriformes, Trichomycteridae) from the Brazilian Cerrado, and the role of Cenozoic events in the diversification of mountain catfishes. Zoosystematics and Evolution 98(1): 151-164. https://doi.org/10.3897/zse.98.83109
Tables S1, S2
Data from: Next-generation museum genomics: phylogenetic relationships among palpimanoid spiders using sequence capture techniques (Araneae: Palpimanoidea)
Historical museum specimens are invaluable for morphological and taxonomic research, but typically the DNA is degraded making traditional sequencing techniques difficult to impossible for many specimens. Recent advances in Next-Generation Sequencing, specifically target capture, makes use of short fragment sizes typical of degraded DNA, opening up the possibilities for gathering genomic data from museum specimens. This study uses museum specimens and recent target capture sequencing techniques to sequence both Ultra-Conserved Elements (UCE) and exonic regions for lineages that span the modern spiders, Araneomorphae, with a focus on Palpimanoidea. While many previous studies have used target capture techniques on dried museum specimens (for example, skins, pinned insects), this study includes specimens that were collected over the last two decades and stored in 70% ethanol at room temperature. Our findings support the utility of target capture methods for examining deep relationships within Araneomorphae: sequences from both UCE and exonic loci were important for resolving relationships; a monophyletic Palpimanoidea was recovered in many analyses and there was strong support for family and generic-level palpimanoid relationships. Ancestral character state reconstructions reveal that the highly modified carapace observed in mecysmaucheniids and archaeids has evolved independently.
FIGURE 4 in Two new species of Demicryptochironomus Lenz, 1941 from India with tentative phylogenetic relationship and a revised world key to known males (Diptera: Chironomidae)
FIGURE 4. Distribution map of Demicryptochironomus (Irmakia) dividuus sp. n.
FIGURE 2 in Two new species of Demicryptochironomus Lenz, 1941 from India with tentative phylogenetic relationship and a revised world key to known males (Diptera: Chironomidae)
FIGURE 2. Distribution map of Demicryptochironomus (s. str.) praeacutus sp. n.
Figure 1 in The new phylogenetic relationships in Veneridae (Bivalvia: Venerida)
Figure 1. Map showing sampling locations in China of venerids sequenced in this study.
Figure 11 in The new phylogenetic relationships in Veneridae (Bivalvia: Venerida)
Figure 11. Shell of Gafrarium pectinatum (A) and Gafrarium tumidum (B).
Supplementary material 1 from: Fassou G, Korotkova N, Nersesyan A, Koch MA, Dimopoulos P, Borsch T (2022) Taxonomy of Dianthus (Caryophyllaceae) – overall phylogenetic relationships and assessment of species diversity based on a first comprehensive checklist of the genus. PhytoKeys 196: 91-214. https://doi.org/10.3897/phytokeys.196.77940
Appendix 1
FIG. 2 in A new species of Gehyra Gray, 1834 (Squamata, Gekkonidae) from the Loyalty Islands and Vanuatu, and phylogenetic relationships in the genus Gehyra in Melanesia
FIG. 2. — Maximum likelihood phylogram of Pacific Gehyra spp. based on sequences of the mitochondrial 16s rRNA gene. Likelihood bootstrap values are shown above branches, posterior probabilities below branches. Outgroup (Rhacodactylus auriculatus Bavay, 1869) not shown.
Supplementary material 3 from: Liebherr JK (2016) Cyphocoleus Chaudoir (Coleoptera, Carabidae, Odacanthini): descriptive taxonomy, phylogenetic relationships, and the Cenozoic history of New Caledonia. Deutsche Entomologische Zeitschrift 63(2): 211-270. https://doi.org/10.3897/dez.63.10241
Specimen records for previously described Cyphocoleus spp. :
Supplementary material 2 from: Liebherr JK (2016) Cyphocoleus Chaudoir (Coleoptera, Carabidae, Odacanthini): descriptive taxonomy, phylogenetic relationships, and the Cenozoic history of New Caledonia. Deutsche Entomologische Zeitschrift 63(2): 211-270. https://doi.org/10.3897/dez.63.10241
NONA format data file for cladistic analysis of Odacanthini :
Supplementary material 1 from: Liebherr JK (2016) Cyphocoleus Chaudoir (Coleoptera, Carabidae, Odacanthini): descriptive taxonomy, phylogenetic relationships, and the Cenozoic history of New Caledonia. Deutsche Entomologische Zeitschrift 63(2): 211-270. https://doi.org/10.3897/dez.63.10241
Checklist of taxa represented in cladistic analysis of Odacanthini :
Supplementary material 2 from: Balakirev A, Abramov A, Rozhnov V (2014) Phylogenetic relationships in the Niviventer-Chiromyscus complex (Rodentia, Muridae) inferred from molecular data, with description of a new species. ZooKeys 451: 109-136. https://doi.org/10.3897/zookeys.451.7210
The list of samples used for combined Cyt b+COI+IRBP+GHR analysis:
Supplementary material 1 from: Balakirev A, Abramov A, Rozhnov V (2014) Phylogenetic relationships in the Niviventer-Chiromyscus complex (Rodentia, Muridae) inferred from molecular data, with description of a new species. ZooKeys 451: 109-136. https://doi.org/10.3897/zookeys.451.7210
Complete list of samples used for phylogenetic reconstructions:
Figure 2 from: Grzywacz B, Tatsuta H (2017) Phylogenetic relationship of Japanese Podismini species (Orthoptera: Acrididae: Melanoplinae) inferred from a partial sequence of cytochrome c oxidase subunit I gene. Journal of Orthoptera Research 26: 11-19. https://doi.org/10.3897/jor.26.14547
Figure 2 - Phylogenetic tree of Podismini based on the Bayesian analysis (BI) of concatenated COI sequences. BI posterior probability (PP) and maximum likelihood bootstrap values (BV) are shown near resolved branches (only support values above 50% are shown) as PP/BV. The respective clades are marked with a square and Roman numeral. We examined Ognevia longipennis from China because of the availability and thus did not treat this specimen as Japanese Podismini (see also text). Light green frames denote the Japanese Podismini analyzed in the present study.
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