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505 results for “Complete genomes”
FIGURE 3 in An additional record of Fejervarya manoharani Garg and Biju from the Western Ghats with a description of its complete mitochondrial genome
FIGURE 3. Phylogenetic tree (ML) constructed based on 839 bp mtDNA (16S and 12S) gene sequences.
Supplementary dataset for "Plasticity of repetitive sequences demonstrated by the complete mitochondrial genome of Eucalyptus camaldulensis"
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Supplementary material 1 from: Wang J, Tai J, Zhang W, He K, Lan H, Liu H (2023) Comparison of seven complete mitochondrial genomes from Lamprologus and Neolamprologus (Chordata, Teleostei, Perciformes) and the phylogenetic implications for Cichlidae. ZooKeys 1184: 115-132. https://doi.org/10.3897/zookeys.1184.107091
Summary of the mitochondrial genomes used for phylogenetic analysis
Figure 5 from: Zheng L-P, Geng Y-M (2024) Complete mitochondrial genome of Guigarra cailaoensis Wang, Chen & Zheng, 2022 (Cypriniformes, Cyprinidae) and its phylogenetic implications. ZooKeys 1190: 75-89. https://doi.org/10.3897/zookeys.1190.113808
Figure 5 Phylogenetic tree of Guigarra cailaoensis and 72 species downloaded from GenBank based on PCG sequences of complete mitogenome combined with ncDNA (Rag1) sequences (dataset 2). Nodal numbers are ML bootstrap values and BI posterior probability values, respectively. Only values above 50% are given.
Figure 4 from: Zheng L-P, Geng Y-M (2024) Complete mitochondrial genome of Guigarra cailaoensis Wang, Chen & Zheng, 2022 (Cypriniformes, Cyprinidae) and its phylogenetic implications. ZooKeys 1190: 75-89. https://doi.org/10.3897/zookeys.1190.113808
Figure 4 Phylogenetic tree of Guigarra cailaoensis and 98 species downloaded from GenBank based on PCG sequences of complete mitogenomes (dataset 1). Nodal numbers are ML bootstrap values and BI posterior probability values, respectively. Only values above 50% are given.
Figure 6 from: Zheng L-P, Geng Y-M (2024) Complete mitochondrial genome of Guigarra cailaoensis Wang, Chen & Zheng, 2022 (Cypriniformes, Cyprinidae) and its phylogenetic implications. ZooKeys 1190: 75-89. https://doi.org/10.3897/zookeys.1190.113808
Figure 6 Phylogenetic tree of Guigarra cailaoensis and 72 species downloaded from GenBank based on ncDNA (Rag1) sequences (dataset 3). Nodal numbers are ML bootstrap values and BI posterior probability values, respectively. Only values above 50% are given.
Genomic spectrograms of subsamplings from complete sequences of SARS-CoV-2
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Figure 1 from: Cruz BA, Cappelmann A, Chutjian H, Roman JC, Reid MA, Wright J, Gonzalez AD, Keyman T, Griffith KM, Appiah-Madson HJ, Distel DL, Hayes VE, Drewery J, Pettay DT, Staton JL, Brugler MR (2024) Complete mitochondrial genomes of the black corals Alternatipathes mirabilis Opresko & Molodtsova, 2021 and Parantipathes larix (Esper, 1788) (Cnidaria, Anthozoa, Hexacorallia, Antipatharia, Schizopathidae). ZooKeys 1196: 79-93. https://doi.org/10.3897/zookeys.1196.116837
Figure 1 Maximum Likelihood phylogenetic tree, based on 13 protein-coding genes and two ribosomal RNAs (42 taxa and 16,416 sites). The mitogenomes of Alternatipathes mirabilis (USNM1070972; OR398473) and Parantipathes larix (USNM1280881; OR398474) are indicated with three asterisks. The families Aphanipathidae and Cladopathidae are polyphyletic with representatives indicated with a horizontal dotted line. The tree is rooted internally to the Leiopathidae. Node support values are based on 1,000 ultrafast bootstrap replicates. Species IDs are followed by museum voucher codes (e.g. USNM) and/or GenBank accession numbers (e.g. MT, NC, ON or SRR).
Figure 3 in Genomic survey sequencing and complete mitochondrial genome of the elkhorn coral crab Domecia acanthophora (Desbonne in Desbonne & Schramm, 1867) (Decapoda: Brachyura: Domeciidae)
Figure 3. Secondary structure of the 22 tRNA genes in Domecia acanthophora.
Figure 1 from: Yılmaz E, Mann DG, Gastineau R, Trobajo R, Solak CN, Górecka E, Turmel M, Lemieux C, Ertorun N, Witkowski A (2024) Description of Navicula vanseea sp. nov. (Naviculales, Naviculaceae), a new species of diatom from the highly alkaline Lake Van (Republic of Türkiye) with complete characterisation of its organellar genomes and multigene phylogeny. PhytoKeys 241: 27-48. https://doi.org/10.3897/phytokeys.241.118903
Figure 1 Map of the sampling location A location of Lake Van in Turkey. The red frame indicates the position of Lake Van B general view of the lake. The pin indicates the position of the sampling area C photo of the epilithic sampling area on the rock (Esri. (2023). ArcGIS Pro 3.1.0. Environmental Systems Research Institute).
Figure 2 from: Yılmaz E, Mann DG, Gastineau R, Trobajo R, Solak CN, Górecka E, Turmel M, Lemieux C, Ertorun N, Witkowski A (2024) Description of Navicula vanseea sp. nov. (Naviculales, Naviculaceae), a new species of diatom from the highly alkaline Lake Van (Republic of Türkiye) with complete characterisation of its organellar genomes and multigene phylogeny. PhytoKeys 241: 27-48. https://doi.org/10.3897/phytokeys.241.118903
Figure 2 Navicula vanseea sp. nov. LM micrographs A–Hin vivo pictures of Navicula vanseea sp. nov. SZCZEY2172 ILM image of a cleaned valve from wild material J–P cleaned valves of Navicula vanseea sp. nov. SZCZEY2172 Q–Y cleaned valves of Navicula vanseea sp. nov. SZCZEY2262 Scale bar: 10 μm.
Figure 9 from: Yılmaz E, Mann DG, Gastineau R, Trobajo R, Solak CN, Górecka E, Turmel M, Lemieux C, Ertorun N, Witkowski A (2024) Description of Navicula vanseea sp. nov. (Naviculales, Naviculaceae), a new species of diatom from the highly alkaline Lake Van (Republic of Türkiye) with complete characterisation of its organellar genomes and multigene phylogeny. PhytoKeys 241: 27-48. https://doi.org/10.3897/phytokeys.241.118903
Figure 9 Maximum Likelihood phylogenetic tree inferred from the alignment of the putative LAGLIDADG endonuclease proteins found in the group I introns of Navicula vanseea sp. nov. and other taxa. The type of genome is indicated between brackets: cp – plastome, mt – mitogenome, bact – bacteria, cyan – cyanobacteria.
Figure 8 from: Yılmaz E, Mann DG, Gastineau R, Trobajo R, Solak CN, Górecka E, Turmel M, Lemieux C, Ertorun N, Witkowski A (2024) Description of Navicula vanseea sp. nov. (Naviculales, Naviculaceae), a new species of diatom from the highly alkaline Lake Van (Republic of Türkiye) with complete characterisation of its organellar genomes and multigene phylogeny. PhytoKeys 241: 27-48. https://doi.org/10.3897/phytokeys.241.118903
Figure 8 Maximum Likelihood phylogenetic tree obtained from concatenated alignments of psbC, rbcL and 18S.
Figure 3 from: Yılmaz E, Mann DG, Gastineau R, Trobajo R, Solak CN, Górecka E, Turmel M, Lemieux C, Ertorun N, Witkowski A (2024) Description of Navicula vanseea sp. nov. (Naviculales, Naviculaceae), a new species of diatom from the highly alkaline Lake Van (Republic of Türkiye) with complete characterisation of its organellar genomes and multigene phylogeny. PhytoKeys 241: 27-48. https://doi.org/10.3897/phytokeys.241.118903
Figure 3 SEM micrographs of Navicula vanseea sp. nov. SZCZEY2172 A external view of the entire valve B details of central area showing simple, slightly drop-shaped proximal raphe endings and shortened striae C, D details of the two apices of a single valve showing the terminal fissures E internal view of the entire valve F details of central area showing filiform proximal raphe endings in a fusiform expansion of the raphe-sternum G, H details of apices showing well-developed helictoglossae showing two isolated lineolae (white arrows). Scale bars: 10 μm (A, E); 3 μm (B–D, F–H).
Figure 4 from: Yılmaz E, Mann DG, Gastineau R, Trobajo R, Solak CN, Górecka E, Turmel M, Lemieux C, Ertorun N, Witkowski A (2024) Description of Navicula vanseea sp. nov. (Naviculales, Naviculaceae), a new species of diatom from the highly alkaline Lake Van (Republic of Türkiye) with complete characterisation of its organellar genomes and multigene phylogeny. PhytoKeys 241: 27-48. https://doi.org/10.3897/phytokeys.241.118903
Figure 4 SEM micrographs of Navicula vanseea sp. nov. SZCZEY2262 A external view of the entire valve B details of central area showing simple proximal raphe endings and shortened striae C details of apex showing the terminal fissure D, E internal view of two entire valves, showing the central area and filiform proximal raphe endings F details of apex showing well-developed helictoglossae G, H girdle view of valves showing continuous areolation on mantle and two isolated lineolae (white arrows). Scale bars: 5 μm (A, D, E, G, H); 3 μm (B, C, F).
Figure 7 from: Zhao W, Liu D, Jia Q, Wu X, Zhang H (2021) Characterization of the complete mitochondrial genome of Myrmus lateralis (Heteroptera, Rhopalidae) and its implication for phylogenetic analyses. ZooKeys 1070: 13-30. https://doi.org/10.3897/zookeys.1070.72742
Figure 7 The phylogenetic relationships of PCG+rRNA using BI and ML methods. Numbers above each node indicate Bayesian posterior probabilities values and ML bootstrap values.
Figure 2 from: Zhao W, Liu D, Jia Q, Wu X, Zhang H (2021) Characterization of the complete mitochondrial genome of Myrmus lateralis (Heteroptera, Rhopalidae) and its implication for phylogenetic analyses. ZooKeys 1070: 13-30. https://doi.org/10.3897/zookeys.1070.72742
Figure 2 The rates of nonsynonymous substitution (Ka), the rates of synonymous substitution (Ks), and the ratio of Ka/Ks for each PCGs of Myrmus lateralis mitogenome
FIGURE 9 in New additions to the Chinese Agraeciini Redtenbacher, 1891 (Orthoptera, Tettigoniidae: Conocephalinae) with report the complete mitochondrial genome of Palaeoagraecia brunnea Ingrisch, 1998
FIGURE 9. Liara (Liara) shii Liu & Bian sp. nov.. A–B. male; C–D. female.
FIGURE 10 in New additions to the Chinese Agraeciini Redtenbacher, 1891 (Orthoptera, Tettigoniidae: Conocephalinae) with report the complete mitochondrial genome of Palaeoagraecia brunnea Ingrisch, 1998
FIGURE 10. Male nymph of Liara (Liara) shii Liu & Bian sp. nov..
FIGURE 12 in New additions to the Chinese Agraeciini Redtenbacher, 1891 (Orthoptera, Tettigoniidae: Conocephalinae) with report the complete mitochondrial genome of Palaeoagraecia brunnea Ingrisch, 1998
FIGURE 12. Habitus of Palaeoagraecia brunnea Ingrisch, 1998 in lateral view. A–B. female.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.